>FC-AP15 (FC-AP15Q) /CSM/FC/FC-AP/FC-AP15Q.Seq.d/
XXXXXXXXXXGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCA
AGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGTATTGACTCTGTCAC
CAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGACCCAGT
TGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCCCATACTGTATCGT
CAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGTTGCCCT
CACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAACA
AATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATCTGGTCC
AGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAATC
AAAGATCTAAGCTCTTTAATAGTTTAGCGAGACTCTCACTCTTTTTTTAAATAATCAAAT
AAAATAAAGGTTCTTTAAAAAAAAAAAATACTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

---RLLKIAEARAATPKGQAAPKAEKPVQHLRFGIDSVTKLIEKKKAKLVVIAHDVDPVE
LVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCVALTGVNSADSNELALLVESAKQM
FNNNSEHRKTWGGNTLSGPARAILAKRQKAEAKESLAKSKI*al**fsetltlflnnqik
*rffkkkky*kkkkkkkkkk

Frame A:
---ldy*kslkpvlplqkvkllqklknqsntyvsvltlspn*skrrkln*sslptmltql
nssytyqpsadvwmshtvssnlnpd*vn*ft*etlhvlpslvstlltqtnsly*lnppnk
cstitvnterpgvvtlylvqlvls*pnvkklkpkkv*pnqrsklfnslarlslff*iik*
nkgslkkkntkkkkkkkkkk


Frame B:
---*iienr*spcchskrsscsks*ktsptltfry*lchqinrkees*isrhcprc*ps*
trliltnplqtygcpilyrqi*iqir*isshekrfmccphwcqlc*lkrtrfis*irqtn
vqq*q*tqkdlgw*hfiwssscylsqtsks*sqrkfsqikdlssliv*rdshsffk*snk
ikvl*kkkilkkkkkkkkkk


Frame C:
---RLLKIAEARAATPKGQAAPKAEKPVQHLRFGIDSVTKLIEKKKAKLVVIAHDVDPVE
LVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCVALTGVNSADSNELALLVESAKQM
FNNNSEHRKTWGGNTLSGPARAILAKRQKAEAKESLAKSKI*al**fsetltlflnnqik
*rffkkkky*kkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB788 (SLB788Q) /CSM/SL/SLB7-D/SLB788Q.Seq.d/                       1041   0.0
FC-BF14 (FC-BF14Q) /CSM/FC/FC-BF/FC-BF14Q.Seq.d/                     1041   0.0
FC-BB05 (FC-BB05Q) /CSM/FC/FC-BB/FC-BB05Q.Seq.d/                     1041   0.0
FC-BB03 (FC-BB03Q) /CSM/FC/FC-BB/FC-BB03Q.Seq.d/                     1041   0.0
FC-AQ10 (FC-AQ10Q) /CSM/FC/FC-AQ/FC-AQ10Q.Seq.d/                     1041   0.0
FC-AP15 (FC-AP15Q) /CSM/FC/FC-AP/FC-AP15Q.Seq.d/                     1041   0.0
FC-AK02 (FC-AK02Q) /CSM/FC/FC-AK/FC-AK02Q.Seq.d/                     1041   0.0
FC-187 (FC-187Q) /CSM/CG/CG-FC/FC-187Q.Seq.d/                        1041   0.0
SSI357 (SSI357Q) /CSM/SS/SSI3-C/SSI357Q.Seq.d/                       1035   0.0
FC-BL19 (FC-BL19Q) /CSM/FC/FC-BL/FC-BL19Q.Seq.d/                     1033   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   668  0.0  3
CA755632| (Y15171) ribosomal protein L7a [Takifugu rubripes], mRNA sequence.    60  3e-05  1
BQ476680|BQ476680.1 curculio4h01.g Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 3', mRNA sequence.    54  4e-05  2
CA845440|CA845440.1 hab99h11.y1 Fugu hgmpD adult gut Takifugu rubripes cDNA clone IMAGE:6356972 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  3e-04  2
CA330639|CA330639.1 hab08d06.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362938 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  5e-04  2
BQ623728|BQ623728.1 USDA-FP_00819 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00819 5', mRNA sequence.    56  5e-04  1
CA846589|CA846589.1 hab83c10.y1 Fugu hgmpC adult gill Takifugu rubripes cDNA clone IMAGE:6355194 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  5e-04  2
CA330747|CA330747.1 haa65h09.y2 Fugu hgmpF adult brain Takifugu rubripes cDNA clone 6358888 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  5e-04  2
CA330317|CA330317.1 hab04g11.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362708 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  5e-04  2
CA845727|CA845727.1 hab73g06.y2 Fugu hgmpB adult spleen Takifugu rubripes cDNA clone IMAGE:6354250 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  6e-04  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a;                     288   1e-76
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ...   143   4e-33
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso...   142   9e-33
CR940348_866(CR940348|pid:none) Theileria annulata strain Ankara...   141   2e-32
BC122243_1(BC122243|pid:none) Danio rerio zgc:153325, mRNA (cDNA...   140   2e-32
EU934303_1(EU934303|pid:none) TSA: Anopheles darlingi AD-165 60S...   140   2e-32
(O76732) RecName: Full=60S ribosomal protein L7a;                     140   3e-32
AF079312_1(AF079312|pid:none) Anopheles gambiae 60S ribosomal pr...   138   1e-31
(Q2TBQ5) RecName: Full=60S ribosomal protein L7a;  &BC109810_1(B...   136   4e-31
EU259814_1(EU259814|pid:none) Spodoptera exigua ribosomal protei...   136   4e-31

 psg: 0.69  gvh: 0.43  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: cytoplasmic
	 28.0 %: mitochondrial

>> prediction for FC-AP15 is cyt

>FC-AP15Z.Seq
----------GCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCA
AGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGTATTGACTCTGTCAC
CAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGACCCAGT
TGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCCCATACTGTATCGT
CAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGTTGCCCT
CACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAACA
AATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATCTGGTCC
AGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAATC
AAAGATCTAAGCTCTTTAATAGTTTAGCGAGACTCTCACTCTTTTTTTAAATAATCAAAT
AAAATAAAGGTTCTTTAAAAAAAAAAAATACTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA