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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AP13
Library FC
(Link to library)
Clone ID FC-AP13
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15374-1
Original site URL
Representative seq. ID FC-AP13P
(Link to Original site)
Representative DNA sequence 
>FC-AP13 (FC-AP13Q) /CSM/FC/FC-AP/FC-AP13Q.Seq.d/
GTTGCTGCACGTGGTTCCATTCAATCCATCGGTGGCATCCCTGATGATTTGAAAGAACTC
TATAAAACAGTTTGGGAAATCCGTCAAAGAACTCTCATCGATATGGCTGCTGATCGTGGT
GCTTTCATCGATCAAAGTCAAAGTTTCAATGTTTTCATTGCTGAACCAACCTTTGCTAAA
CTCACCTCAATGCATTTCTACTCATGGAAGAAAGGTTTAAAGACTGGTATGTACTATCTT
CGTACTCGTCCTGCCGCTGATGCAATTCAATTCACTGTTGATCCAATCGTATCTCAAACT
CCAAAACCAGTTGAAAATAATATAAACTCAACTACACCACTTAAAACTCCAACTAGAACT
CCAAACTCTTCAAATCGTATCTCTACTAGTCCAACTAATAATTTAACAAGTCCAATTCGT
TTTAATATAACCCAACAACAACAACAACAACAACAACAACAACAACAACAAAATAATAAT
GAAGATGATTTGGCTAATTATGATGGTATGACTTGTCGTCGTGAAGAAGGTTGTTTAGTT
TGTGGTAGTTXXXXXXXXXXAGAAAAAAAAAAAAAAATGGAAAAAAAAAGCAATTTATGT
TAAAACAATTTTGTATAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATTAAATATTTTAAT
AATAATAATATAATTTAATAATCATCAAGTTATGGAAAAAAAAATAAAAAAAAAAATAAA
AAACAAAAAAAATTTTTAAAAAAA
sequence update 1997. 3.28
Translated Amino Acid sequence 
VAARGSIQSIGGIPDDLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAK
LTSMHFYSWKKGLKTGMYYLRTRPAADAIQFTVDPIVSQTPKPVENNINSTTPLKTPTRT
PNSSNRISTSPTNNLTSPIRFNITQQQQQQQQQQQQQNNNEDDLANYDGMTCRREEGCLV
CGS---

---KKKKKWKKKAIYVKTILYKKKKKKKKRKLNILIIII*fnnhqvmekkikkkiknkkn
f*k
Translated Amino Acid sequence (All Frames) 
Frame A:
VAARGSIQSIGGIPDDLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAK
LTSMHFYSWKKGLKTGMYYLRTRPAADAIQFTVDPIVSQTPKPVENNINSTTPLKTPTRT
PNSSNRISTSPTNNLTSPIRFNITQQQQQQQQQQQQQNNNEDDLANYDGMTCRREEGCLV
CGS---

---rkkkkngkkkqfmlkqfcikkkkkkkken*if****ynliiiklwkkk*kkk*ktkk
ifkk

Frame B:
llhvvpfnpsvaslmi*knsikqfgksvkelssiwllivvlssikvkvsmfsllnqplln
spqcisthgrkv*rlvctifvlvlplmqfnslliqsylklqnqlkii*tqlhhlklqlel
qtlqivsllvqlii*qvqfvli*pnnnnnnnnnnnnkiimkmiwlimmv*lvvvkkvv*f
vvv---

---ekkkkmekksnlc*nnfv*kkkkkkkkkikyfnnnnii**sssygkknkkknkkqkk
flkk

Frame C:
cctwfhsihrwhp**fertl*nslgnpsknshrygc*swcfhrskskfqcfhc*tnlc*t
hlnafllmeerfkdwyvlssysscr*cnsihc*snrisnskts*k*yklnytt*nsn*ns
klfksyly*sn**fnksnsf*ynpttttttttttttk***r*fg*l*wydlss*rrlfsl
w*---

---KKKKKWKKKAIYVKTILYKKKKKKKKRKLNILIIII*fnnhqvmekkikkkiknkkn
f*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AP13 (FC-AP13Q) /CSM/FC/FC-AP/FC-AP13Q.Seq.d/                      856   0.0
VHJ574 (VHJ574Q) /CSM/VH/VHJ5-D/VHJ574Q.Seq.d/                        848   0.0
VHJ361 (VHJ361Q) /CSM/VH/VHJ3-C/VHJ361Q.Seq.d/                        848   0.0
VHI178 (VHI178Q) /CSM/VH/VHI1-D/VHI178Q.Seq.d/                        848   0.0
VHG111 (VHG111Q) /CSM/VH/VHG1-A/VHG111Q.Seq.d/                        848   0.0
VHE423 (VHE423Q) /CSM/VH/VHE4-A/VHE423Q.Seq.d/                        848   0.0
VHD391 (VHD391Q) /CSM/VH/VHD3-D/VHD391Q.Seq.d/                        848   0.0
SHL165 (SHL165Q) /CSM/SH/SHL1-C/SHL165Q.Seq.d/                        848   0.0
SHL127 (SHL127Q) /CSM/SH/SHL1-B/SHL127Q.Seq.d/                        848   0.0
SHK789 (SHK789Q) /CSM/SH/SHK7-D/SHK789Q.Seq.d/                        848   0.0
own update 2002.10. 6
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AW332783|AW332783.1 S13A1 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52  6e-12  3
AW332364|AW332364.1 S7E4 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52  7e-12  3
AW335099|AW335099.1 S43B7 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52  9e-12  3
AW334328|AW334328.1 S33D5 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52  1e-11  3
AW333566|AW333566.1 S23D1 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    48  2e-09  3
AL403114|AL403114.1 T3 end of clone AT0AA006F08 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii.    54  2e-08  4
AU216303|AU216303.1 Caenorhabditis elegans cDNA clone:yk836b04 : 3' end, single read.    48  8e-08  3
AU214892|AU214892.1 Caenorhabditis elegans cDNA clone:yk818f05 : 3' end, single read.    48  9e-08  3
BJ140643|BJ140643.1 Caenorhabditis elegans cDNA clone:yk1160g04 : 3' end, single read.    48  1e-07  3
BJ139726|BJ139726.1 Caenorhabditis elegans cDNA clone:yk1150a08 : 3' end, single read.    48  1e-07  3
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Q71) RecName: Full=Ribonucleoside-diphosphate reductase larg...   342   7e-93
AE017345_335(AE017345|pid:none) Cryptococcus neoformans var. neo...   159   8e-38
AM910995_121(AM910995|pid:none) Plasmodium knowlesi strain H chr...   156   7e-37
CR940352_507(CR940352|pid:none) Theileria annulata strain Ankara...   152   8e-36
(P50648) RecName: Full=Ribonucleoside-diphosphate reductase larg...   152   1e-35
(P50647) RecName: Full=Ribonucleoside-diphosphate reductase larg...   152   1e-35
AF107045_1(AF107045|pid:none) Homo sapiens ribonucleotide reduct...   150   4e-35
(P07742) RecName: Full=Ribonucleoside-diphosphate reductase larg...   150   4e-35
AK303394_1(AK303394|pid:none) Homo sapiens cDNA FLJ52525 complet...   150   4e-35
BC109486_1(BC109486|pid:none) Bos taurus ribonucleotide reductas...   150   4e-35
protein update 2009. 4.13
PSORT 

 psg: 0.84  gvh: 0.37  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.02
 nuc: 0.66  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: cytoplasmic

>> prediction for FC-AP13 is nuc
5' end seq. ID FC-AP13F
5' end seq. 
>FC-AP13F.Seq
GTTGCTGCACGTGGTTCCATTCAATCCATCGGTGGCATCCCTGATGATTTGAAAGAACTC
TATAAAACAGTTTGGGAAATCCGTCAAAGAACTCTCATCGATATGGCTGCTGATCGTGGT
GCTTTCATCGATCAAAGTCAAAGTTTCAATGTTTTCATTGCTGAACCAACCTTTGCTAAA
CTCACCTCAATGCATTTCTACTCATGGAAGAAAGGTTTAAAGACTGGTATGTACTATCTT
CGTACTCGTCCTGCCGCTGATGCAATTCAATTCACTGTTGATCCAATCGTATCTCAAACT
CCAAAACCAGTTGAAAATAATATAAACTCAACTACACCACTTAAAACTCCAACTAGAACT
CCAAACTCTTCAAATCGTATCTCTACTAGTCCAACTAATAATTTAACAAGTCCAATTCGT
TTTAATATAACCCAACAACAACAACAACAACAACAACAACAACAACAACAAAATAATAAT
GAAGATGATTTGGCTAATTATGATGGTATGACTTGTCGTCGTGAAGAAGGTTGTTTAGTT
TGTGGTAGTT----------
Length of 5' end seq. 550
3' end seq. ID FC-AP13Z
3' end seq. 
>FC-AP13Z.Seq
----------AGAAAAAAAAAAAAAAATGGAAAAAAAAAGCAATTTATGTTAAAACAATT
TTGTATAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATTAAATATTTTAATAATAATAATA
TAATTTAATAATCATCAAGTTATGGAAAAAAAAATAAAAAAAAAAATAAAAAACAAAAAA
AATTTTTAAAAAAA
Length of 3' end seq. 184
Connected seq. ID FC-AP13P
Connected seq. 
>FC-AP13P.Seq
GTTGCTGCACGTGGTTCCATTCAATCCATCGGTGGCATCCCTGATGATTTGAAAGAACTC
TATAAAACAGTTTGGGAAATCCGTCAAAGAACTCTCATCGATATGGCTGCTGATCGTGGT
GCTTTCATCGATCAAAGTCAAAGTTTCAATGTTTTCATTGCTGAACCAACCTTTGCTAAA
CTCACCTCAATGCATTTCTACTCATGGAAGAAAGGTTTAAAGACTGGTATGTACTATCTT
CGTACTCGTCCTGCCGCTGATGCAATTCAATTCACTGTTGATCCAATCGTATCTCAAACT
CCAAAACCAGTTGAAAATAATATAAACTCAACTACACCACTTAAAACTCCAACTAGAACT
CCAAACTCTTCAAATCGTATCTCTACTAGTCCAACTAATAATTTAACAAGTCCAATTCGT
TTTAATATAACCCAACAACAACAACAACAACAACAACAACAACAACAACAAAATAATAAT
GAAGATGATTTGGCTAATTATGATGGTATGACTTGTCGTCGTGAAGAAGGTTGTTTAGTT
TGTGGTAGTT----------AGAAAAAAAAAAAAAAATGGAAAAAAAAAGCAATTTATGT
TAAAACAATTTTGTATAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATTAAATATTTTAAT
AATAATAATATAATTTAATAATCATCAAGTTATGGAAAAAAAAATAAAAAAAAAAATAAA
AAACAAAAAAAATTTTTAAAAAAA
Length of connected seq. 734
Full length Seq ID -
Full length Seq. -
Length of full length seq. -