FC-AP12
Library FC
(Link to library)
Clone ID FC-AP12
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15924-1
Original site URL
Representative seq. ID FC-AP12P
(Link to Original site)
Representative DNA sequence
>FC-AP12 (FC-AP12Q) /CSM/FC/FC-AP/FC-AP12Q.Seq.d/
CATATTATTTTAAATTTCAGATGTTCCCAAAATAACACATTAATTTGCTTTTTTTGTTGT
GTTTTTATTATAATAATTTTTCTTTATTCTTTTAATTATTATTTTCAGACACATTAACAG
CTAGTAAAAAAATAAAATAAAAAAAAATTATAAAAAAAATTAAAATAAAATATATATTAT
TATTTTATTATCATTATTTTTTATTTTTTTTTTTCAAATAGTAACATATAAATAAAACTA
TAGAATACAATATATATATTTTAGGAATAAATCCTAAAAGTAATAAAAATAATATTAAAT
AATAATAAATGAAATGAATAGATXXXXXXXXXXTTATCAATCAGTTATTTTACCATTATT
ACCAAATTCAGTATCATCATTATCAATTGTTGATTTATTATCGGCACCAGTACCATATAT
AATTGGGTTAACAGATGTACCAAAGGATGTTGATTATAGTGATATAGTACAATATGATAT
TGATACTGGAAAACTACAACAAGGTAATCAAAAAATAATGTTATTCCCACATTGGCAAGA
TCTATTGAATGTATTGACCATCGCTCAAAAAGATATTAAAACATCATTAACTGTAAATAA
AAATAAGGGTTTCTCATCTCCAACAACTTCTTTCATACCAACTGAAGAACAAGAATTAAA
ACTTCAACCTTTTGTATCAGCAATCAATAATCATATCTCTGGTTTATTCGATAACTTTAA
AAGACATTGTGTTAGAAATGTCACTCATCAAAAAACAATCTCAGTTTTCGTTAAAGAATC
TTTCATGTTCACTGAATATCCTGAAGAGGAACATCATCAATGGATTGACGAATTCACTAA
AACTCTTATGTTTTCAATGTATTTAGATCAAAAATTACGAATTGAAGATAATGATCAATT
GGATGAATCAACTTAATTTATAAAGAAAAAAAAAAAAAAAAATTCA
sequence update 1997. 3.28
Translated Amino Acid sequence
ilf*isdvpkith*faffvvfll**fffilliiifrhins**knkikknykkn*nkiyii
illslffifffqivtyk*nyriqyiyfrnks*k**k*y*IIINEMNR---

---YQSVILPLLPNSVSSLSIVDLLSAPVPYIIGLTDVPKDVDYSDIVQYDIDTGKLQQG
NQKIMLFPHWQDLLNVLTIAQKDIKTSLTVNKNKGFSSPTTSFIPTEEQELKLQPFVSAI
NNHISGLFDNFKRHCVRNVTHQKTISVFVKESFMFTEYPEEEHHQWIDEFTKTLMFSMYL
DQKLRIEDNDQLDEST*fikkkkkkns


Translated Amino Acid sequence (All Frames)
Frame A:
hiilnfrcsqnntlicffccvfiiiiflysfnyyfqth*qlvkk*nkkkl*kklk*niyy
yfiiiifyfffsnsni*ikl*ntiyif*e*ilkvikiilnnnk*ne*---

---lsisyftiitkfsiiiinc*fiigtstiynwvnrctkgc*l**ysti*y*ywktttr
*sknnviptlarsiecidhrskry*niinck*k*gflisnnffhtn*rtriktstfcisn
q*sylwfir*l*ktlc*kchssknnlsfr*rifhvh*is*rgtssmd*rih*nsyvfnvf
rskitn*r**sig*inliykekkkkkf

Frame B:
ilf*isdvpkith*faffvvfll**fffilliiifrhins**knkikknykkn*nkiyii
illslffifffqivtyk*nyriqyiyfrnks*k**k*y*IIINEMNR---

---YQSVILPLLPNSVSSLSIVDLLSAPVPYIIGLTDVPKDVDYSDIVQYDIDTGKLQQG
NQKIMLFPHWQDLLNVLTIAQKDIKTSLTVNKNKGFSSPTTSFIPTEEQELKLQPFVSAI
NNHISGLFDNFKRHCVRNVTHQKTISVFVKESFMFTEYPEEEHHQWIDEFTKTLMFSMYL
DQKLRIEDNDQLDEST*fikkkkkkns

Frame C:
yyfkfqmfpk*hinllfllcfyynnfslff*llfsdtltaskkik*kkiikkikikyill
fyyhyflffffk**hinktieyniyilginpksnknnik***mk*id---

---inqlfyhyyqiqyhhyqlliyyrhqyhi*lg*qmyqrmliivi*ynmililenynkv
ikk*cyshigkiy*my*pslkkilkhh*l*ikirvshlqqllsyqlknkn*nfnllyqqs
iiislvysitlkdivlemslikkqsqfslknlscslnilkrniingltnslkllcfqci*
iknyelkiminwmnqlnl*rkkkkki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AP12 (FC-AP12Q) /CSM/FC/FC-AP/FC-AP12Q.Seq.d/ 1174 0.0
VHL403 (VHL403Q) /CSM/VH/VHL4-A/VHL403Q.Seq.d/ 1080 0.0
SSA632 (SSA632Q) /CSM/SS/SSA6-B/SSA632Q.Seq.d/ 688 0.0
SLD526 (SLD526Q) /CSM/SL/SLD5-B/SLD526Q.Seq.d/ 571 e-162
CHM168 (CHM168Q) /CSM/CH/CHM1-C/CHM168Q.Seq.d/ 559 e-158
SLD576 (SLD576Q) /CSM/SL/SLD5-D/SLD576Q.Seq.d/ 361 1e-98
SSI780 (SSI780Q) /CSM/SS/SSI7-D/SSI780Q.Seq.d/ 38 0.24
SLD725 (SLD725Q) /CSM/SL/SLD7-B/SLD725Q.Seq.d/ 38 0.24
SHE421 (SHE421Q) /CSM/SH/SHE4-A/SHE421Q.Seq.d/ 38 0.24
SHC552 (SHC552Q) /CSM/SH/SHC5-C/SHC552Q.Seq.d/ 38 0.24

own update 2004. 5.31
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BX005169|BX005169.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-81D10. 44 0.010 6
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2. 38 0.014 12
BX005207|BX005207.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 44 0.044 5
AC114261|AC114261.2 Dictyostelium discoideum chromosome 2 map 126059-159710 strain AX4, complete sequence. 36 0.074 5
AA257208|AA257208.1 SWMFCA1500SK Brugia malayi microfilaria cDNA (SAW94LS-BmMf) Brugia malayi cDNA clone SWMFCA1500 5', mRNA sequence. 40 0.18 2
AC109574|AC109574.5 Rattus norvegicus clone CH230-121A11, WORKING DRAFT SEQUENCE, 1 ordered piece. 48 0.19 1
AC135488|AC135488.2 Rattus norvegicus clone CH230-341B15, WORKING DRAFT SEQUENCE, 3 unordered pieces. 48 0.19 1
AC130999|AC130999.3 Rattus norvegicus clone CH230-54B8, WORKING DRAFT SEQUENCE, 9 unordered pieces. 48 0.19 1
AC097084|AC097084.8 Rattus norvegicus clone CH230-62E12, WORKING DRAFT SEQUENCE, 3 unordered pieces. 48 0.19 1
AZ579690|AZ579690.1 1M0367E14R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0367E14 R, DNA sequence. 44 0.22 2
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AK067308_1(AK067308|pid:none) Oryza sativa Japonica Group cDNA c... 49 2e-04
CR954217_258(CR954217|pid:none) Ostreococcus tauri strain OTTH05... 45 0.003
BT037091_1(BT037091|pid:none) Zea mays full-length cDNA clone ZM... 44 0.008
CP000596_251(CP000596|pid:none) Ostreococcus lucimarinus CCE9901... 39 0.24
CR628337_2395(CR628337|pid:none) Legionella pneumophila str. Len... 37 0.92
BC161427_1(BC161427|pid:none) Xenopus tropicalis hypothetical pr... 37 1.2
EU805803_7(EU805803|pid:none) Salmonella enterica subsp. enteric... 36 2.0
AY093021_1(AY093021|pid:none) Arabidopsis thaliana unknown prote... 36 2.1
(Q96N64) RecName: Full=PWWP domain-containing protein 2A; 35 3.5
AB015477_21(AB015477|pid:none) Arabidopsis thaliana genomic DNA,... 35 4.6
protein update 2009. 4.13
PSORT

psg: 0.90 gvh: 0.60 alm: 0.34 top: 0.60 tms: 0.00 mit: 0.35 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
24.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: vacuolar

>> prediction for FC-AP12 is nuc

5' end seq. ID FC-AP12F
5' end seq.
>FC-AP12F.Seq
CATATTATTTTAAATTTCAGATGTTCCCAAAATAACACATTAATTTGCTTTTTTTGTTGT
GTTTTTATTATAATAATTTTTCTTTATTCTTTTAATTATTATTTTCAGACACATTAACAG
CTAGTAAAAAAATAAAATAAAAAAAAATTATAAAAAAAATTAAAATAAAATATATATTAT
TATTTTATTATCATTATTTTTTATTTTTTTTTTTCAAATAGTAACATATAAATAAAACTA
TAGAATACAATATATATATTTTAGGAATAAATCCTAAAAGTAATAAAAATAATATTAAAT
AATAATAAATGAAATGAATAGAT----------
Length of 5' end seq. 323
3' end seq. ID FC-AP12Z
3' end seq.
>FC-AP12Z.Seq
----------TTATCAATCAGTTATTTTACCATTATTACCAAATTCAGTATCATCATTAT
CAATTGTTGATTTATTATCGGCACCAGTACCATATATAATTGGGTTAACAGATGTACCAA
AGGATGTTGATTATAGTGATATAGTACAATATGATATTGATACTGGAAAACTACAACAAG
GTAATCAAAAAATAATGTTATTCCCACATTGGCAAGATCTATTGAATGTATTGACCATCG
CTCAAAAAGATATTAAAACATCATTAACTGTAAATAAAAATAAGGGTTTCTCATCTCCAA
CAACTTCTTTCATACCAACTGAAGAACAAGAATTAAAACTTCAACCTTTTGTATCAGCAA
TCAATAATCATATCTCTGGTTTATTCGATAACTTTAAAAGACATTGTGTTAGAAATGTCA
CTCATCAAAAAACAATCTCAGTTTTCGTTAAAGAATCTTTCATGTTCACTGAATATCCTG
AAGAGGAACATCATCAATGGATTGACGAATTCACTAAAACTCTTATGTTTTCAATGTATT
TAGATCAAAAATTACGAATTGAAGATAATGATCAATTGGATGAATCAACTTAATTTATAA
AGAAAAAAAAAAAAAAAAATTCA
Length of 3' end seq. 613
Connected seq. ID FC-AP12P
Connected seq.
>FC-AP12P.Seq
CATATTATTTTAAATTTCAGATGTTCCCAAAATAACACATTAATTTGCTTTTTTTGTTGT
GTTTTTATTATAATAATTTTTCTTTATTCTTTTAATTATTATTTTCAGACACATTAACAG
CTAGTAAAAAAATAAAATAAAAAAAAATTATAAAAAAAATTAAAATAAAATATATATTAT
TATTTTATTATCATTATTTTTTATTTTTTTTTTTCAAATAGTAACATATAAATAAAACTA
TAGAATACAATATATATATTTTAGGAATAAATCCTAAAAGTAATAAAAATAATATTAAAT
AATAATAAATGAAATGAATAGAT----------TTATCAATCAGTTATTTTACCATTATT
ACCAAATTCAGTATCATCATTATCAATTGTTGATTTATTATCGGCACCAGTACCATATAT
AATTGGGTTAACAGATGTACCAAAGGATGTTGATTATAGTGATATAGTACAATATGATAT
TGATACTGGAAAACTACAACAAGGTAATCAAAAAATAATGTTATTCCCACATTGGCAAGA
TCTATTGAATGTATTGACCATCGCTCAAAAAGATATTAAAACATCATTAACTGTAAATAA
AAATAAGGGTTTCTCATCTCCAACAACTTCTTTCATACCAACTGAAGAACAAGAATTAAA
ACTTCAACCTTTTGTATCAGCAATCAATAATCATATCTCTGGTTTATTCGATAACTTTAA
AAGACATTGTGTTAGAAATGTCACTCATCAAAAAACAATCTCAGTTTTCGTTAAAGAATC
TTTCATGTTCACTGAATATCCTGAAGAGGAACATCATCAATGGATTGACGAATTCACTAA
AACTCTTATGTTTTCAATGTATTTAGATCAAAAATTACGAATTGAAGATAATGATCAATT
GGATGAATCAACTTAATTTATAAAGAAAAAAAAAAAAAAAAATTCA
Length of connected seq. 936
Full length Seq ID -
Full length Seq. -
Length of full length seq. -