>FC-AP11 (FC-AP11Q) /CSM/FC/FC-AP/FC-AP11Q.Seq.d/
ACTAGTTCTAGATCGCGAGCGGCCGCCCTTTTTTTTTATTTTATTTTTTTTTTTTTTTTA
AGAAATACAAATACTCTTAATTGTACATAAAGAAGAAGAAAAAAAAAAAAAGGGTTGTTG
TATAATAGTAGTAATAATAAATAAAATAAAATAAAACAAAATAAAACAAAATAAAATAAA
ATAAAATAAAATAAAATAAAATAAAATCAAATATATATATTAAAAAAAGAAAAAAAAAAA
AAAGAGGAAAAATGGAGAAATATTCAAAAATTGAAAAATTAGGAGAAGGTACATATGGTA
TTGTATATAAAGCACAAGAATCGTGAAACAGGTGAAATTGTAGCTTTAAAAAGATAAGGT
TAGACTCTGAAGATGAAGGTGTACCATGTACAGCXXXXXXXXXXAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

*f*iasgrpfflfyfffffkkykys*lyikkkkkkkrvvv******ik*nktk*nkik*n
kik*nkiksniyikkrkkkkrgkmekyskieklgegtygivykaqes*nr*NCSFKKIRL
DSEDEGVPCT---

---KKKKKKKKKKKKKKKKK

Frame A:
tssrsraaalffyfifffflrntntlnct*rrrkkkkgllynssnnk*nkikqnktk*nk
ik*nkik*nqiyilkkekkkkeekwrniqklkn*ekvhmvlyikhknretgeivalkr*g
*tlkmkvyhvq---

---KKKKKKKKKKKKKKKKK

Frame B:
lvldrerppfffilfffff*eiqillivhkeeekkkkgcciivviinkik*nkikqnkik
*nkik*nkikyiy*kkkkkkkrkngeifkn*kirrryiwyci*strivkqvkl*l*kdkv
rl*r*rctmys---

---kkkkkkkkkkkkkkkk

Frame C:
*f*iasgrpfflfyfffffkkykys*lyikkkkkkkrvvv******ik*nktk*nkik*n
kik*nkiksniyikkrkkkkrgkmekyskieklgegtygivykaqes*nr*NCSFKKIRL
DSEDEGVPCT---

---kkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AP11 (FC-AP11Q) /CSM/FC/FC-AP/FC-AP11Q.Seq.d/                      230   1e-59
SSJ587 (SSJ587Q) /CSM/SS/SSJ5-D/SSJ587Q.Seq.d/                        192   3e-48
SSF796 (SSF796Q) /CSM/SS/SSF7-D/SSF796Q.Seq.d/                        192   3e-48
SSC187 (SSC187Q) /CSM/SS/SSC1-D/SSC187Q.Seq.d/                        192   3e-48
SSC822 (SSC822Q) /CSM/SS/SSC8-A/SSC822Q.Seq.d/                         56   5e-07
SLI833 (SLI833Q) /CSM/SL/SLI8-B/SLI833Q.Seq.d/                         56   5e-07
FC-BF13 (FC-BF13Q) /CSM/FC/FC-BF/FC-BF13Q.Seq.d/                       56   5e-07
FC-044 (FC-044Q) /CSM/CG/CG-FC/FC-044Q.Seq.d/                          56   5e-07
VSJ833 (VSJ833Q) /CSM/VS/VSJ8-B/VSJ833Q.Seq.d/                         54   2e-06
SSM380 (SSM380Q) /CSM/SS/SSM3-D/SSM380Q.Seq.d/                         54   2e-06

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L00652|L00652.1 Dictyostelium discoideum (crp) gene, complete cds.    78  3e-38  3
BI739315|BI739315.1 603359619F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:5366765 5', mRNA sequence.    56  3e-05  2
BG109266|BG109266.1 602281101F1 NIH_MGC_86 Homo sapiens cDNA clone IMAGE:4368648 5', mRNA sequence.    56  3e-05  2
BF303369|BF303369.1 602030290F1 NCI_CGAP_SG2 Mus musculus cDNA clone IMAGE:4165223 5', mRNA sequence.    54  3e-05  2
CD722181|CD722181.1 oj06e07.y1 Human lacrimal gland, unamplified: oj Homo sapiens cDNA clone oj06e07 5', mRNA sequence.    48  1e-04  3
BG869729|BG869729.1 602789219F1 NCI_CGAP_SG2 Mus musculus cDNA clone IMAGE:4920557 5', mRNA sequence.    56  1e-04  2
BF345929|BF345929.1 602017931F1 NCI_CGAP_Brn67 Homo sapiens cDNA clone IMAGE:4153542 5', mRNA sequence.    56  2e-04  2
BQ221705|BQ221705.1 AGENCOURT_7553700 NIH_MGC_92 Homo sapiens cDNA clone IMAGE:6046233 5', mRNA sequence.    56  4e-04  1
BM016443|BM016443.1 603641249F1 NIH_MGC_87 Homo sapiens cDNA clone IMAGE:5417004 5', mRNA sequence.    56  4e-04  1
BM600791|BM600791.1 17000687066678 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449695507 5', mRNA sequence.    56  4e-04  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34117) RecName: Full=Cell division protein kinase 5 homolog;  ...    60   2e-08
CT005260_131(CT005260|pid:none) Leishmania major strain Friedlin...    59   4e-08
(Q06309) RecName: Full=Cell division protein kinase 2 homolog CR...    59   4e-08
AM494958_131(AM494958|pid:none) Leishmania braziliensis chromoso...    59   4e-08
L00652_1(L00652|pid:none) Dictyostelium discoideum (crp) gene, c...    57   2e-07
U18365_1(U18365|pid:none) Brassica napus cyclin dependent protei...    56   3e-07
AY090353_1(AY090353|pid:none) Arabidopsis thaliana AT3g48750/T21...    56   3e-07
AY063462_1(AY063462|pid:none) Helianthus tuberosus cyclin-depend...    56   3e-07
(P24100) RecName: Full=Cyclin-dependent kinase A-1;          Sho...    56   3e-07
AJ496622_1(AJ496622|pid:none) Coffea arabica mRNA for cyclin dep...    56   3e-07

 psg: 0.55  gvh: 0.09  alm: 0.69  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.03
 nuc: 1.21  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for FC-AP11 is nuc

>FC-AP11F.Seq
ACTAGTTCTAGATCGCGAGCGGCCGCCCTTTTTTTTTATTTTATTTTTTTTTTTTTTTTA
AGAAATACAAATACTCTTAATTGTACATAAAGAAGAAGAAAAAAAAAAAAAGGGTTGTTG
TATAATAGTAGTAATAATAAATAAAATAAAATAAAACAAAATAAAACAAAATAAAATAAA
ATAAAATAAAATAAAATAAAATAAAATCAAATATATATATTAAAAAAAGAAAAAAAAAAA
AAAGAGGAAAAATGGAGAAATATTCAAAAATTGAAAAATTAGGAGAAGGTACATATGGTA
TTGTATATAAAGCACAAGAATCGTGAAACAGGTGAAATTGTAGCTTTAAAAAGATAAGGT
TAGACTCTGAAGATGAAGGTGTACCATGTACAGC----------