>FC-AP08 (FC-AP08Q) /CSM/FC/FC-AP/FC-AP08Q.Seq.d/
AATAAAAAAAAAAAAAAAAAAAAAAACACTTGAAATTAATATTTTTTTTCATAAAAAGCT
GTACAGTTTATCATCTGAAAGAGTTAATCACATTATAATTATAAATAAAAAAAATATATA
TATATXXXXXXXXXXCAACTACAACATTCCCAGAATATAAAGAAAGAGAATTTAGTGTTA
GAAGAAGATATAAAGAATTTGTTAATTTAAGAGATCATTTAAAACAAAAATTATCAGAGA
AACCAAAAGCAATTAAATTTGGTGAATTATGTCCATTACCAGGTAATAATCTTTCATCAT
TATTTGGTCAAGGTCGTTTTGAACCTGAATTTATTGAAGAAAGAAGAAAAGGTTTAGAAC
AATTTTTAAACTCTGTTGCAAATCATAATTACTTTAGATTCATTCCACTTTTACATAAAT
TCCTCCAAGATCAATCTTTAACTTTATTGTAAAAAAAAAATAAAAAATAAAAAATAAAAT
AAAAAAT

IKKKKKKKTLEINIFFHKKLYSLSSERVNHIIIINKKNIYI---

---TTTFPEYKEREFSVRRRYKEFVNLRDHLKQKLSEKPKAIKFGELCPLPGNNLSSLFG
QGRFEPEFIEERRKGLEQFLNSVANHNYFRFIPLLHKFLQDQSLTLL*kknkk*kik*k

Frame A:
nkkkkkkknt*n*yffs*kavqfii*ks*shynyk*kkyiy---

---qlqhsqnikkenlvleediknlli*eii*nknyqrnqkqlnlvnyvhyqviifhhyl
vkvvlnlnllkkeekv*nnf*tllqiiitldsfhfyinsskinl*lyckkkiknkk*nkk

Frame B:
IKKKKKKKTLEINIFFHKKLYSLSSERVNHIIIINKKNIYI---

---nynipri*rkri*c*kki*ric*fkrsfktkiiretksn*iw*imsitr**sfiiiw
srsf*t*iy*rkkkrfrtifklccks*ll*ihstft*ipprsifnfivkkk*kiknkikn

Frame C:
*kkkkkkkhlklifffiksctvyhlkelitl*l*ikkiyiy---

---TTTFPEYKEREFSVRRRYKEFVNLRDHLKQKLSEKPKAIKFGELCPLPGNNLSSLFG
QGRFEPEFIEERRKGLEQFLNSVANHNYFRFIPLLHKFLQDQSLTLL*kknkk*kik*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA612 (VSA612Q) /CSM/VS/VSA6-A/VSA612Q.Seq.d/                        624   e-178
FC-AP08 (FC-AP08Q) /CSM/FC/FC-AP/FC-AP08Q.Seq.d/                      624   e-178
VSC261 (VSC261Q) /CSM/VS/VSC2-C/VSC261Q.Seq.d/                        618   e-176
SSD107 (SSD107Q) /CSM/SS/SSD1-A/SSD107Q.Seq.d/                        609   e-173
SSA742 (SSA742Q) /CSM/SS/SSA7-B/SSA742Q.Seq.d/                        100   4e-20
VSI401 (VSI401Q) /CSM/VS/VSI4-A/VSI401Q.Seq.d/                         38   0.12
VSH758 (VSH758Q) /CSM/VS/VSH7-C/VSH758Q.Seq.d/                         36   0.48
VSE192 (VSE192Q) /CSM/VS/VSE1-D/VSE192Q.Seq.d/                         36   0.48
VSC315 (VSC315Q) /CSM/VS/VSC3-A/VSC315Q.Seq.d/                         36   0.48
VFI273 (VFI273Q) /CSM/VF/VFI2-D/VFI273Q.Seq.d/                         36   0.48

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.   345  e-178  4
BI509126|BI509126.1 BB170012B10H04.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170012B10H04 5', mRNA sequence.    44  0.004  3
BI503654|BI503654.1 BB170019B20D10 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170019B20D10 5', mRNA sequence.    44  0.004  3
AW853876|AW853876.1 RC3-CT0254-120200-025-f08 CT0254 Homo sapiens cDNA, mRNA sequence.    36  0.008  2
AW853872|AW853872.1 RC3-CT0254-120200-025-d02 CT0254 Homo sapiens cDNA, mRNA sequence.    36  0.009  2
BQ508266|BQ508266.2 EST615681 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGV34 5' end, mRNA sequence.    48  0.097  1
BI176114|BI176114.1 EST517197 cSTS Solanum tuberosum cDNA clone cSTS24P22 5' sequence, mRNA sequence.    48  0.097  1
BX324184|BX324184.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-184N21.    36  0.25  7
AZ688221|AZ688221.1 ENTHJ92TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40  0.29  3
AZ679462|AZ679462.1 ENTLU07TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  0.35  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC044462_1(BC044462|pid:none) Danio rerio sorting nexin 12, mRNA...    69   7e-11
AF461063_3(AF461063|pid:none) Takifugu rubripes HSPC019 (HSPC019...    68   9e-11
(Q9UMY4) RecName: Full=Sorting nexin-12;  &AY888973_1(AY888973|p...    67   2e-10
AY891572_1(AY891572|pid:none) Synthetic construct Homo sapiens c...    67   2e-10
BC002009_1(BC002009|pid:none) Mus musculus sorting nexin 12, mRN...    67   2e-10
AJ721054_1(AJ721054|pid:none) Gallus gallus mRNA for hypothetica...    67   2e-10
AK011257_1(AK011257|pid:none) Mus musculus 10 days embryo whole ...    67   2e-10
AB170419_1(AB170419|pid:none) Macaca fascicularis brain cDNA clo...    67   2e-10
AF171229_1(AF171229|pid:none) Homo sapiens sorting nexin 12 (SNX...    67   2e-10
DQ066327_1(DQ066327|pid:none) Ixodes scapularis isolate IS-6-12L...    67   2e-10

 psg: 0.63  gvh: 0.25  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.09
 nuc: 0.28  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for FC-AP08 is nuc

>FC-AP08F.Seq
AATAAAAAAAAAAAAAAAAAAAAAAACACTTGAAATTAATATTTTTTTTCATAAAAAGCT
GTACAGTTTATCATCTGAAAGAGTTAATCACATTATAATTATAAATAAAAAAAATATATA
TATAT----------

>FC-AP08Z.Seq
----------CAACTACAACATTCCCAGAATATAAAGAAAGAGAATTTAGTGTTAGAAGA
AGATATAAAGAATTTGTTAATTTAAGAGATCATTTAAAACAAAAATTATCAGAGAAACCA
AAAGCAATTAAATTTGGTGAATTATGTCCATTACCAGGTAATAATCTTTCATCATTATTT
GGTCAAGGTCGTTTTGAACCTGAATTTATTGAAGAAAGAAGAAAAGGTTTAGAACAATTT
TTAAACTCTGTTGCAAATCATAATTACTTTAGATTCATTCCACTTTTACATAAATTCCTC
CAAGATCAATCTTTAACTTTATTGTAAAAAAAAAATAAAAAATAAAAAATAAAATAAAAA
AT

>FC-AP08P.Seq
AATAAAAAAAAAAAAAAAAAAAAAAACACTTGAAATTAATATTTTTTTTCATAAAAAGCT
GTACAGTTTATCATCTGAAAGAGTTAATCACATTATAATTATAAATAAAAAAAATATATA
TATAT----------CAACTACAACATTCCCAGAATATAAAGAAAGAGAATTTAGTGTTA
GAAGAAGATATAAAGAATTTGTTAATTTAAGAGATCATTTAAAACAAAAATTATCAGAGA
AACCAAAAGCAATTAAATTTGGTGAATTATGTCCATTACCAGGTAATAATCTTTCATCAT
TATTTGGTCAAGGTCGTTTTGAACCTGAATTTATTGAAGAAAGAAGAAAAGGTTTAGAAC
AATTTTTAAACTCTGTTGCAAATCATAATTACTTTAGATTCATTCCACTTTTACATAAAT
TCCTCCAAGATCAATCTTTAACTTTATTGTAAAAAAAAAATAAAAAATAAAAAATAAAAT
AAAAAAT