>FC-AP07 (FC-AP07Q) /CSM/FC/FC-AP/FC-AP07Q.Seq.d/
CAATTAGCTTCTGCATCTGCTGTAAGTTGTTTAACACCAAAAGTTCATACAAGTGTTTAT
GGTATTCCAACAACTGGTACTGATCAAACTCAAATTGAAAATTTACTTTCAAATCTTGGT
TCACAAAATTGGATAAATGAAATTGTTCAAAATTCACTTTCAAATATTTTTAAACCAAAT
GTAAATAATAATAATCAAAATCAAAATCAATCAACAACAACAAATAATAATAATACTACA
ACAACAACAACTACATCAACAACAAAAAATGAAGAAAAACAAAAAACTGAAAAGAATGAA
AATATGGTTGAACATGTTGGNATTACATGTGATGGTTGTGATTCAAAAGTATTTGGTAAT
CGTTATAAATGTACAGTTTGTCATGATTATGATTTATGTTCAGAATGTGAATCACGTGGA
GACCAAGTTCATCCAACTTCTCATCCATTATTGAAAATCGCACAACCAACTCCAATTTCA
TGTTCATGGCAACATAGTAACGCTGGTCGTAGTGGTATTCCACATGGTTTTGGTGGTGGT
AGATGTXXXXXXXXXXAATTTCAAATTCATTCAATATTCCACCAGTTGCTGAACAACAAC
AACAAGAAAAAATAAATAACAACACAAGTAATAATTCAAATAATTATCAATTACCACCAT
TACCAGTAGTTGAACAAGAACAAATTATTGAAAATGTTCAACCACAAGTTGAAGAATTCC
CAAAACTTGAAGAATTATCAGTAAATGGTGAACAAGAAGATATTAGACGTAAATGTATTG
GTACATTGGTTTCAATGGGTTTCAGTAATACTCCAAATATTATTGAAATTATCAAAAGAT
ATAATTTCAATATCAATGAAATCATTGACCATTTATTAAGTAATCAAGAACAATAAAAAA
GATCTTAGAAAATCTTTTTCTTTTTTTTTTTTGTTTAGTTTCCTTTTTTTAAAAATTAAT
AAATAAAATTTTATATTATAAAATCAAAAAAAAAAAAAAAAA

QLASASAVSCLTPKVHTSVYGIPTTGTDQTQIENLLSNLGSQNWINEIVQNSLSNIFKPN
VNNNNQNQNQSTTTNNNNTTTTTTTSTTKNEEKQKTEKNENMVEHVGITCDGCDSKVFGN
RYKCTVCHDYDLCSECESRGDQVHPTSHPLLKIAQPTPISCSWQHSNAGRSGIPHGFGGG
RC---

---ISNSFNIPPVAEQQQQEKINNNTSNNSNNYQLPPLPVVEQEQIIENVQPQVEEFPKL
EELSVNGEQEDIRRKCIGTLVSMGFSNTPNIIEIIKRYNFNINEIIDHLLSNQEQ*krs*
kiffffffv*fpffkn**ikfyiikskkkkk

Frame A:
QLASASAVSCLTPKVHTSVYGIPTTGTDQTQIENLLSNLGSQNWINEIVQNSLSNIFKPN
VNNNNQNQNQSTTTNNNNTTTTTTTSTTKNEEKQKTEKNENMVEHVGITCDGCDSKVFGN
RYKCTVCHDYDLCSECESRGDQVHPTSHPLLKIAQPTPISCSWQHSNAGRSGIPHGFGGG
RC---

---nfkfiqystsc*ttttrknk*qhk**fk*lsittitss*trtny*kcstts*ripkt
*riiskw*trry*t*mywyigfngfq*yskyy*nyqki*fqyq*nh*pfik*srtikkil
enlflfffclvsff*klinkilyykikkkkk

Frame B:
n*llhll*vv*hqkfiqvfmvfqqlvliklklkiyfqilvhkig*mklfkihfqiflnqm
*iiiikikinqqqqiiiilqqqqlhqqqkmkknkklkrmkiwlnmlxlhvmvviqkylvi
vinvqfvmimiyvqnvnhvetkfiqllihy*kshnqlqfhvhgnivtlvvvvfhmvlvvv
d---

---ISNSFNIPPVAEQQQQEKINNNTSNNSNNYQLPPLPVVEQEQIIENVQPQVEEFPKL
EELSVNGEQEDIRRKCIGTLVSMGFSNTPNIIEIIKRYNFNINEIIDHLLSNQEQ*krs*
kiffffffv*fpffkn**ikfyiikskkkkk

Frame C:
isfciccklfntkssykclwysnnwy*snsn*kftfkswftkldk*ncskftfkyf*tkc
k***sksksinnnk***yynnnnyinnkk*rktkn*ke*kyg*tcwxym*wl*fksiw*s
l*mysls*l*fmfrm*itwrpsssnfssiienrttnsnfmfmat**rws*wystwfwww*
m---

---fqihsifhqllnnnnkkk*ittqviiqiiinyhhyq*lnknkllkmfnhklknsqnl
knyq*mvnkkildvnvlvhwfqwvsvilqillklskdiisismksltiy*viknnkkdlr
ksfsffflfsflflkink*nfil*nqkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AP07 (FC-AP07Q) /CSM/FC/FC-AP/FC-AP07Q.Seq.d/                     1148   0.0
SSM404 (SSM404Q) /CSM/SS/SSM4-A/SSM404Q.Seq.d/                        702   0.0
SSM351 (SSM351Q) /CSM/SS/SSM3-C/SSM351Q.Seq.d/                        702   0.0
SSM280 (SSM280Q) /CSM/SS/SSM2-D/SSM280Q.Seq.d/                        702   0.0
SSK110 (SSK110Q) /CSM/SS/SSK1-A/SSK110Q.Seq.d/                        702   0.0
SSI103 (SSI103Q) /CSM/SS/SSI1-A/SSI103Q.Seq.d/                        702   0.0
SSH104 (SSH104Q) /CSM/SS/SSH1-A/SSH104Q.Seq.d/                        702   0.0
SSE569 (SSE569Q) /CSM/SS/SSE5-C/SSE569Q.Seq.d/                        702   0.0
SSA184 (SSA184Q) /CSM/SS/SSA1-D/SSA184Q.Seq.d/                        702   0.0
SLA424 (SLA424Q) /CSM/SL/SLA4-A/SLA424Q.Seq.d/                        702   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36  8e-06  9
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    48  6e-05  7
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40  1e-04  6
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    46  6e-04  11
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    36  7e-04  10
AC113870|AC113870.5 Rattus norvegicus clone CH230-291M19, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    56  8e-04  1
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    38  0.004  8
AE016969|AE016969.1 Mycoplasma gallisepticum strain R section 3 of 4 of the complete genome.    36  0.005  9
AC013727|AC013727.7 Homo sapiens BAC clone RP11-451G1 from 2, complete sequence.    34  0.007  7
AC018391|AC018391.4 Homo sapiens clone RP11-11G6, WORKING DRAFT SEQUENCE, 23 unordered pieces.    40  0.011  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC056852_1(BC056852|pid:none) Xenopus laevis hypothetical protei...    65   5e-09
AK098077_1(AK098077|pid:none) Homo sapiens cDNA FLJ40758 fis, cl...    61   5e-08
BC000951_1(BC000951|pid:none) Homo sapiens, Similar to sequestos...    61   5e-08
(Q5RBA5) RecName: Full=Sequestosome-1; AltName: Full=Ubiquitin-b...    61   5e-08
AY890879_1(AY890879|pid:none) Synthetic construct Homo sapiens c...    61   5e-08
U46752_1(U46752|pid:none) Human phosphotyrosine independent liga...    61   5e-08
BT045678_1(BT045678|pid:none) Salmo salar clone ssal-rgf-528-266...    61   7e-08
AY836662_1(AY836662|pid:none) Aurelia aurita clone 135 oxidative...    60   9e-08
(Q64337) RecName: Full=Sequestosome-1; AltName: Full=Ubiquitin-b...    60   1e-07
AF439403_1(AF439403|pid:none) Rattus norvegicus protein kinase C...    60   1e-07

 psg: 0.89  gvh: 0.58  alm: 0.45  top: 0.50  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar

>> prediction for FC-AP07 is nuc

>FC-AP07F.Seq
CAATTAGCTTCTGCATCTGCTGTAAGTTGTTTAACACCAAAAGTTCATACAAGTGTTTAT
GGTATTCCAACAACTGGTACTGATCAAACTCAAATTGAAAATTTACTTTCAAATCTTGGT
TCACAAAATTGGATAAATGAAATTGTTCAAAATTCACTTTCAAATATTTTTAAACCAAAT
GTAAATAATAATAATCAAAATCAAAATCAATCAACAACAACAAATAATAATAATACTACA
ACAACAACAACTACATCAACAACAAAAAATGAAGAAAAACAAAAAACTGAAAAGAATGAA
AATATGGTTGAACATGTTGGNATTACATGTGATGGTTGTGATTCAAAAGTATTTGGTAAT
CGTTATAAATGTACAGTTTGTCATGATTATGATTTATGTTCAGAATGTGAATCACGTGGA
GACCAAGTTCATCCAACTTCTCATCCATTATTGAAAATCGCACAACCAACTCCAATTTCA
TGTTCATGGCAACATAGTAACGCTGGTCGTAGTGGTATTCCACATGGTTTTGGTGGTGGT
AGATGT----------

>FC-AP07Z.Seq
----------AATTTCAAATTCATTCAATATTCCACCAGTTGCTGAACAACAACAACAAG
AAAAAATAAATAACAACACAAGTAATAATTCAAATAATTATCAATTACCACCATTACCAG
TAGTTGAACAAGAACAAATTATTGAAAATGTTCAACCACAAGTTGAAGAATTCCCAAAAC
TTGAAGAATTATCAGTAAATGGTGAACAAGAAGATATTAGACGTAAATGTATTGGTACAT
TGGTTTCAATGGGTTTCAGTAATACTCCAAATATTATTGAAATTATCAAAAGATATAATT
TCAATATCAATGAAATCATTGACCATTTATTAAGTAATCAAGAACAATAAAAAAGATCTT
AGAAAATCTTTTTCTTTTTTTTTTTTGTTTAGTTTCCTTTTTTTAAAAATTAATAAATAA
AATTTTATATTATAAAATCAAAAAAAAAAAAAAAAA

>FC-AP07P.Seq
CAATTAGCTTCTGCATCTGCTGTAAGTTGTTTAACACCAAAAGTTCATACAAGTGTTTAT
GGTATTCCAACAACTGGTACTGATCAAACTCAAATTGAAAATTTACTTTCAAATCTTGGT
TCACAAAATTGGATAAATGAAATTGTTCAAAATTCACTTTCAAATATTTTTAAACCAAAT
GTAAATAATAATAATCAAAATCAAAATCAATCAACAACAACAAATAATAATAATACTACA
ACAACAACAACTACATCAACAACAAAAAATGAAGAAAAACAAAAAACTGAAAAGAATGAA
AATATGGTTGAACATGTTGGNATTACATGTGATGGTTGTGATTCAAAAGTATTTGGTAAT
CGTTATAAATGTACAGTTTGTCATGATTATGATTTATGTTCAGAATGTGAATCACGTGGA
GACCAAGTTCATCCAACTTCTCATCCATTATTGAAAATCGCACAACCAACTCCAATTTCA
TGTTCATGGCAACATAGTAACGCTGGTCGTAGTGGTATTCCACATGGTTTTGGTGGTGGT
AGATGT----------AATTTCAAATTCATTCAATATTCCACCAGTTGCTGAACAACAAC
AACAAGAAAAAATAAATAACAACACAAGTAATAATTCAAATAATTATCAATTACCACCAT
TACCAGTAGTTGAACAAGAACAAATTATTGAAAATGTTCAACCACAAGTTGAAGAATTCC
CAAAACTTGAAGAATTATCAGTAAATGGTGAACAAGAAGATATTAGACGTAAATGTATTG
GTACATTGGTTTCAATGGGTTTCAGTAATACTCCAAATATTATTGAAATTATCAAAAGAT
ATAATTTCAATATCAATGAAATCATTGACCATTTATTAAGTAATCAAGAACAATAAAAAA
GATCTTAGAAAATCTTTTTCTTTTTTTTTTTTGTTTAGTTTCCTTTTTTTAAAAATTAAT
AAATAAAATTTTATATTATAAAATCAAAAAAAAAAAAAAAAA