>FC-AP01 (FC-AP01Q) /CSM/FC/FC-AP/FC-AP01Q.Seq.d/
XXXXXXXXXXAAGGTCATTTGTTAGGTCGTTTAGCCTCCGTTGTTGCTAAATCCCTCCTC
TCTGGTCAAAAGATCGTTGTTGTCCGTTGTGAAGAGCTCAACATCTCAGGTCCATTATCA
CGTAACAAATTAAAATGGGCTGATTTCCTCAACTTAACCATGAACACCAATCACGCTCGT
GGTCACAGACACGGTAGATCACCATCAAAGATCTTCTGGAGAGCTGTCAGAGGTATGTTA
CCACACAAAACCCCACGTGGTCAAGCTGCCCTCGATAACATGAAAGTTTTCGAAGGTGTC
CCAGCCCCATACGATAAAGTCAAGAGAGTTGTTGTCCCATCTGCTCTCCGTGTTGTCAAA
TTAAACACCACCCGTAAATACACCGTCTTATCTCGTTTATCCCAAGAAGTCGGTTGGAAA
TACAGAGCTGTTGTTGCCAAATTAGAAGTCCAAAGAAAACAAAGATCTTCAACTTATTAC
CGTAAAGCTGCTTTAGTCAAAGCCTACAGAACTCAAGCCTTAAAGAAATTCTCTGCTTAA
ATTAAAAATCTTGAAACATAATAAATGATTTTTTGCTTTAAAAAAAATAAAAAAAAAAAA
A

---GHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARG
HRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKL
NTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYYRKAALVKAYRTQALKKFSA*i
knlet**mifcfkknkkkk

Frame A:
---rsfvrsfslrcc*ipplwskdrccpl*raqhlrsiit*qikmg*fpqlnhehqsrsw
sqtr*itikdllescqryvttqnptwsscpr*hesfrrcpspir*sqesccpicspccqi
khhp*ihrlisfiprsrleiqscccqirspkktkifnllp*scfsqslqnsslkeilcln
*ks*niindfll*kk*kkk


Frame B:
---GHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARG
HRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKL
NTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYYRKAALVKAYRTQALKKFSA*i
knlet**mifcfkknkkkk


Frame C:
---vic*vv*pplllnpsslvkrsllsvvksstsqvhyhvtn*nglisst*p*tpitlvv
tdtvdhhqrssgelsevcyhtkphvvklpsit*kfskvsqphtiksrellshllsvlsn*
tppvntpsylvypkksvgntelllpn*kskenkdlqlitvkll*skptelkp*rnsllkl
kilkhnk*ffalkkikkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ620 (VSJ620Q) /CSM/VS/VSJ6-A/VSJ620Q.Seq.d/                       1128   0.0
SLH873 (SLH873Q) /CSM/SL/SLH8-D/SLH873Q.Seq.d/                       1128   0.0
SLE766 (SLE766Q) /CSM/SL/SLE7-C/SLE766Q.Seq.d/                       1128   0.0
FCL-AA03 (FCL-AA03Q) /CSM/FCL/FCL-AA/FCL-AA03Q.Seq.d/                1128   0.0
FC-BQ12 (FC-BQ12Q) /CSM/FC/FC-BQ/FC-BQ12Q.Seq.d/                     1128   0.0
FC-BF03 (FC-BF03Q) /CSM/FC/FC-BF/FC-BF03Q.Seq.d/                     1128   0.0
FC-AP01 (FC-AP01Q) /CSM/FC/FC-AP/FC-AP01Q.Seq.d/                     1128   0.0
FC-028 (FC-028Q) /CSM/CG/CG-FC/FC-028Q.Seq.d/                        1128   0.0
FC-AU09 (FC-AU09Q) /CSM/FC/FC-AU/FC-AU09Q.Seq.d/                     1120   0.0
FC-AB34 (FC-AB34Q) /CSM/FC/FC-AB/FC-AB34Q.Seq.d/                     1120   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.  1128  0.0  1
AZ930376|AZ930376.1 474.dhz53e07.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz53e07.s1, DNA sequence.    64  4e-18  4
AL400702|AL400702.1 T7 end of clone AS0AA023C05 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    54  4e-12  4
Z38059|Z38059.1 S.cerevisiae chromosome IX lambda clones 4357-3717.    52  1e-11  5
T37589|T37589.1 EST102765 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    52  2e-08  3
T37872|T37872.1 EST103157 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    42  8e-08  3
T37941|T37941.1 EST103256 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    52  5e-06  2
BZ305072|BZ305072.1 KD3311.q1 Kluyveromyces delphensis Random Genomic Library Kluyveromyces delphensis genomic clone KD3311, DNA sequence.    42  1e-05  3
BM317372|BM317372.1 fw85f03.x1 Gong zebrafish testis Danio rerio cDNA clone 5617277 3' similar to SW:R13A_HUMAN P40429 60S RIBOSOMAL PROTEIN L13A ;, mRNA sequence.    44  1e-04  2
T37913|T37913.1 EST103209 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 5' end, mRNA sequence.    46  3e-04  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q553M7) RecName: Full=60S ribosomal protein L13a;                    347   1e-94
AY815942_1(AY815942|pid:none) Schistosoma japonicum SJCHGC04249 ...   218   7e-56
AK222747_1(AK222747|pid:none) Homo sapiens mRNA for ribosomal pr...   217   2e-55
AB170257_1(AB170257|pid:none) Macaca fascicularis brain cDNA clo...   217   2e-55
BC004900_1(BC004900|pid:none) Homo sapiens ribosomal protein L13...   217   2e-55
(Q3SZ90) RecName: Full=60S ribosomal protein L13a;  &BC103039_1(...   215   6e-55
AF109186_1(AF109186|pid:none) Homo sapiens FWP004 mRNA, complete...   215   8e-55
BC043976_1(BC043976|pid:none) Xenopus laevis ribosomal protein L...   214   1e-54
(Q5RA38) RecName: Full=60S ribosomal protein L13a;  &CR859183_1(...   214   1e-54
(P19253) RecName: Full=60S ribosomal protein L13a; AltName: Full...   213   2e-54

 psg: 0.79  gvh: 0.51  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.05
 nuc: 0.16  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: cytoplasmic
	 24.0 %: mitochondrial

>> prediction for FC-AP01 is cyt

>FC-AP01Z.Seq
----------AAGGTCATTTGTTAGGTCGTTTAGCCTCCGTTGTTGCTAAATCCCTCCTC
TCTGGTCAAAAGATCGTTGTTGTCCGTTGTGAAGAGCTCAACATCTCAGGTCCATTATCA
CGTAACAAATTAAAATGGGCTGATTTCCTCAACTTAACCATGAACACCAATCACGCTCGT
GGTCACAGACACGGTAGATCACCATCAAAGATCTTCTGGAGAGCTGTCAGAGGTATGTTA
CCACACAAAACCCCACGTGGTCAAGCTGCCCTCGATAACATGAAAGTTTTCGAAGGTGTC
CCAGCCCCATACGATAAAGTCAAGAGAGTTGTTGTCCCATCTGCTCTCCGTGTTGTCAAA
TTAAACACCACCCGTAAATACACCGTCTTATCTCGTTTATCCCAAGAAGTCGGTTGGAAA
TACAGAGCTGTTGTTGCCAAATTAGAAGTCCAAAGAAAACAAAGATCTTCAACTTATTAC
CGTAAAGCTGCTTTAGTCAAAGCCTACAGAACTCAAGCCTTAAAGAAATTCTCTGCTTAA
ATTAAAAATCTTGAAACATAATAAATGATTTTTTGCTTTAAAAAAAATAAAAAAAAAAAA
A