>AFA111 (AFA111Q) /CSM/AF/AFA1-A/AFA111Q.Seq.d/
XXXXXXXXXXAAATACACGAACATCCAGTCACAGGTGTTTACGTCGCCGGTTTAAAAGAA
GAGATCGTTTTATCGGTTGAACATGTACTCTCATTAATATCAGCAGGTGAAGCACATAGA
CATGTCGGTAGTACATCATACAATTTACAATCATCACGTAGTCATACCATTTTCAAAATG
ATCATTGAAAGTAAAGAGGTTTTACCAGAGGGGAGTGGTAGTGGTGGTCTAGAATCACCC
GTTAGATATAGTACATTGAATTTAATAGATTTAGCAGGTTCAGAGAAAGCATCAGAGTCA
ACAATTAGCGCAATTAGAAATAAAGAAGGTTCATATATTAATAAATCATTATTGACACTT
GGTACTGTGATTTCAAAGTTATCAGAGAAAGATACTGGTTATATACCGTATCGTGATTCT
AAATTAACTAGAGTCTTGCAAAATTCATTAAGTGGTAATTCTAGAGTTGCAATCATATGT
ACGATCACATTAGCATCAAACAATTTCGAAGAGTCTCACAATACATTAAAATTTGCAAGT
AGAGCTAAAAAGATATCAAACAATGCCAAGGTTAATGAAATTNCTTGATGATAAAGCATT
ATTAAAGACAATATAGAAATGAAATTGCTGAATTAAAACAANATTTACAGATGCA

---IHEHPVTGVYVAGLKEEIVLSVEHVLSLISAGEAHRHVGSTSYNLQSSRSHTIFKMI
IESKEVLPEGSGSGGLESPVRYSTLNLIDLAGSEKASESTISAIRNKEGSYINKSLLTLG
TVISKLSEKDTGYIPYRDSKLTRVLQNSLSGNSRVAIICTITLASNNFEESHNTLKFASR
AKKISNNAKVNEIX***siikdniemklln*nxiyrc

Frame A:
---ntrtsshrclrrrfkrrdrfig*tctlinisr*st*tcr*yiiqftiit*syhfqnd
h*k*rgftrgew*wwsritr*i*yiefnrfsrfresirvnn*rn*k*rrfiy**iiidtw
ycdfkvirerywlytvs*f*in*slakfikw*f*scnhmydhisikqfrrvsqyikick*
s*kdikqcqg**nxlmikhy*rqyrneiaelkqxlqm


Frame B:
---IHEHPVTGVYVAGLKEEIVLSVEHVLSLISAGEAHRHVGSTSYNLQSSRSHTIFKMI
IESKEVLPEGSGSGGLESPVRYSTLNLIDLAGSEKASESTISAIRNKEGSYINKSLLTLG
TVISKLSEKDTGYIPYRDSKLTRVLQNSLSGNSRVAIICTITLASNNFEESHNTLKFASR
AKKISNNAKVNEIX***siikdniemklln*nxiyrc


Frame C:
---ytniqsqvftspv*kkrsfyrlnmysh*yqqvkhidmsvvhhtiynhhvvipfsk*s
lkvkrfyqrgvvvvv*nhpldivh*i**i*qvqrkhqsqqlaqleikkvhilinhy*hlv
l*fqsyqrkilviyriviln*lesckih*vvilelqsyvrsh*hqtisksltih*nlqve
lkryqtmprlmkxlddkallkti*k*nc*iktxftda

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFA111 (AFA111Q) /CSM/AF/AFA1-A/AFA111Q.Seq.d/                       1267   0.0
AFK347 (AFK347Q) /CSM/AF/AFK3-B/AFK347Q.Seq.d/                         48   2e-04
VHO657 (VHO657Q) /CSM/VH/VHO6-C/VHO657Q.Seq.d/                         36   0.65
SSG324 (SSG324Q) /CSM/SS/SSG3-A/SSG324Q.Seq.d/                         36   0.65
SSE467 (SSE467Q) /CSM/SS/SSE4-C/SSE467Q.Seq.d/                         36   0.65
FC-AB24 (FC-AB24Q) /CSM/FC/FC-AB/FC-AB24Q.Seq.d/                       36   0.65
CHP827 (CHP827Q) /CSM/CH/CHP8-B/CHP827Q.Seq.d/                         36   0.65
VHO552 (VHO552Q) /CSM/VH/VHO5-C/VHO552Q.Seq.d/                         34   2.6
VHM109 (VHM109Q) /CSM/VH/VHM1-A/VHM109Q.Seq.d/                         34   2.6
VHK350 (VHK350Q) /CSM/VH/VHK3-C/VHK350Q.Seq.d/                         34   2.6

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BE040084|BE040084.1 OD104B08 OD Oryza sativa cDNA 5' similar to kinesin like protein, mRNA sequence.    40  3e-05  3
AL033502|AL033502.1 C.albicans cosmid Ca38F10.                    50  0.008  2
BF588042|BF588042.1 FM1_37_A06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum cDNA, mRNA sequence.    36  0.023  2
AC101851|AC101851.6 Mus musculus clone RP23-276E14, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42  0.030  2
BQ864090|BQ864090.1 QGC25L24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC25L24, mRNA sequence.    50  0.034  1
BQ999076|BQ999076.1 QGG21A17.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGG21A17, mRNA sequence.    50  0.034  1
AZ522361|AZ522361.1 205PbG11 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    50  0.034  1
AL831771|AL831771.4 Mouse DNA sequence from clone RP23-336F13 on chromosome X.    48  0.14  1
AC008209|AC008209.5 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone BACR06K17, complete sequence.    38  0.38  2
AC012323|AC012323.7 Homo sapiens chromosome 16 clone RP11-89O14, complete sequence.    36  0.41  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY484464_1(AY484464|pid:none) Dictyostelium discoideum kinesin f...   328   1e-89
AC174297_6(AC174297|pid:none) Medicago truncatula clone mth2-73p...   204   2e-51
AP004853_16(AP004853|pid:none) Oryza sativa Japonica Group genom...   204   2e-51
AC006841_13(AC006841|pid:none) Arabidopsis thaliana chromosome 2...   203   4e-51
AC068924_30(AC068924|pid:none) Oryza sativa chromosome 10 BAC OS...   202   9e-51
AB062739_1(AB062739|pid:none) Arabidopsis thaliana MKRP2 mRNA fo...   201   1e-50
AY091060_1(AY091060|pid:none) Arabidopsis thaliana putative kine...   201   1e-50
CR855188_3(CR855188|pid:none) Oryza sativa genomic DNA, chromoso...   199   4e-50
AL606626_16(AL606626|pid:none) Oryza sativa genomic DNA, chromos...   199   4e-50
AP002040_15(AP002040|pid:none) Arabidopsis thaliana genomic DNA,...   195   1e-48

 psg: 0.75  gvh: 0.60  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for AFA111 is cyt

>AFA111Z.Seq
----------AAATACACGAACATCCAGTCACAGGTGTTTACGTCGCCGGTTTAAAAGAA
GAGATCGTTTTATCGGTTGAACATGTACTCTCATTAATATCAGCAGGTGAAGCACATAGA
CATGTCGGTAGTACATCATACAATTTACAATCATCACGTAGTCATACCATTTTCAAAATG
ATCATTGAAAGTAAAGAGGTTTTACCAGAGGGGAGTGGTAGTGGTGGTCTAGAATCACCC
GTTAGATATAGTACATTGAATTTAATAGATTTAGCAGGTTCAGAGAAAGCATCAGAGTCA
ACAATTAGCGCAATTAGAAATAAAGAAGGTTCATATATTAATAAATCATTATTGACACTT
GGTACTGTGATTTCAAAGTTATCAGAGAAAGATACTGGTTATATACCGTATCGTGATTCT
AAATTAACTAGAGTCTTGCAAAATTCATTAAGTGGTAATTCTAGAGTTGCAATCATATGT
ACGATCACATTAGCATCAAACAATTTCGAAGAGTCTCACAATACATTAAAATTTGCAAGT
AGAGCTAAAAAGATATCAAACAATGCCAAGGTTAATGAAATTNCTTGATGATAAAGCATT
ATTAAAGACAATATAGAAATGAAATTGCTGAATTAAAACAANATTTACAGATGCA