FC-AO17
Library FC
(Link to library)
Clone ID FC-AO17
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16254-1
Original site URL
Representative seq. ID FC-AO17Z
(Link to Original site)
Representative DNA sequence
>FC-AO17 (FC-AO17Q) /CSM/FC/FC-AO/FC-AO17Q.Seq.d/
XXXXXXXXXXTTCGAATCTAGCTTTGTCGGTCAAAACCATTATGAAAATCGTGATATCTT
TAATTCATTGGATCTTGGTTGGTCTTTATTAAGAACTTTCCCAAGCAATCTCCTCAAACG
TATCACTGAAAAAACTATTAAACAATACTATTCACGTTCATCAAAGGGTACTAGATTCAA
CTAACTAAATTTTAAAAAGAAAAAAATATAAATCAAAAAAAAAAAAATAAAATAAAATCT
AAAAATAAAATAAAATAAAAAAAAATTTTAAAAATAAAACTTTTAAAAAAAAAAAAAAAA
AAAAAA
sequence update 1997. 3.25
Translated Amino Acid sequence
---ESSFVGQNHYENRDIFNSLDLGWSLLRTFPSNLLKRITEKTIKQYYSRSSKGTRFN*
lnfkkkki*ikkkkik*nlkik*nkkkf*k*nf*kkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---snlalsvktimkivislihwilvgly*elsqaissnvslkkllnntihvhqrvldst
n*ilkrkkykskkkk*nki*k*nkikknfknktfkkkkkkk


Frame B:
---ri*lcrskpl*ks*yl*figswlvfiknfpkqspqtyh*kny*tilftfikgy*iql
tkf*kekninqkkknkiksknkik*kkilkikllkkkkkkk


Frame C:
---ESSFVGQNHYENRDIFNSLDLGWSLLRTFPSNLLKRITEKTIKQYYSRSSKGTRFN*
lnfkkkki*ikkkkik*nlkik*nkkkf*k*nf*kkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AO17 (FC-AO17Q) /CSM/FC/FC-AO/FC-AO17Q.Seq.d/ 361 4e-99
VFF339 (VFF339Q) /CSM/VF/VFF3-B/VFF339Q.Seq.d/ 343 9e-94
VFD313 (VFD313Q) /CSM/VF/VFD3-A/VFD313Q.Seq.d/ 343 9e-94
SLH888 (SLH888Q) /CSM/SL/SLH8-D/SLH888Q.Seq.d/ 343 9e-94
SLF335 (SLF335Q) /CSM/SL/SLF3-B/SLF335Q.Seq.d/ 343 9e-94
SLD112 (SLD112Q) /CSM/SL/SLD1-A/SLD112Q.Seq.d/ 343 9e-94
SLC323 (SLC323Q) /CSM/SL/SLC3-A/SLC323Q.Seq.d/ 343 9e-94
SLB692 (SLB692Q) /CSM/SL/SLB6-D/SLB692Q.Seq.d/ 343 9e-94
SLB190 (SLB190Q) /CSM/SL/SLB1-D/SLB190Q.Seq.d/ 343 9e-94
SFK761 (SFK761Q) /CSM/SF/SFK7-C/SFK761Q.Seq.d/ 343 9e-94

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***. 321 2e-88 2
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 321 8e-88 2
U63317|U63317.1 Dictyostelium discoideum vacuolar H+ ATPase B subunit (dvacB) mRNA, partial cds. 313 6e-82 1
AC068416|AC068416.14 Homo sapiens chromosome 8 clone RP11-266C9 map 8, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces. 42 3.6 1
BZ827790|BZ827790.1 PUFFA11TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa304B21, DNA sequence. 42 3.6 1
CB325093|CB325093.1 UI-R-DZ0-crm-f-02-0-UI.s1 UI-R-DZ0 Rattus norvegicus cDNA clone UI-R-DZ0-crm-f-02-0-UI 3', mRNA sequence. 42 3.6 1
BX470146|BX470146.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-126D11. 42 3.6 1
AZ540793|AZ540793.1 ENTFK06TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 42 3.6 1
AZ535060|AZ535060.1 ENTBW36TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 42 3.6 1
BZ335223|BZ335223.1 hx96c09.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone hx96c09 5', DNA sequence. 42 3.6 1
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q76NU1) RecName: Full=V-type proton ATPase subunit B; ... 113 2e-24
U63317_1(U63317|pid:none) Dictyostelium discoideum vacuolar H+ A... 112 5e-24
(Q19626) RecName: Full=Probable V-type proton ATPase subunit B; ... 71 1e-11
AY641405_1(AY641405|pid:none) Entamoeba histolytica vacuolar ATP... 70 3e-11
(Q38681) RecName: Full=V-type proton ATPase subunit B 1; ... 68 8e-11
(Q38680) RecName: Full=V-type proton ATPase subunit B 2; ... 68 8e-11
AF099743_1(AF099743|pid:none) Anguilla anguilla vacuolar-type H+... 67 2e-10
BC158440_1(BC158440|pid:none) Xenopus tropicalis ATPase, H+ tran... 67 2e-10
BC123236_1(BC123236|pid:none) Xenopus laevis hypothetical protei... 67 2e-10
AY197611_1(AY197611|pid:none) Artemia franciscana vacuolar proto... 67 2e-10
protein update 2009. 4.13
PSORT

psg: 0.75 gvh: 0.50 alm: 0.53 top: 0.53 tms: 0.00 mit: 0.13 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: cytoskeletal
12.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for FC-AO17 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-AO17Z
3' end seq.
>FC-AO17Z.Seq
----------TTCGAATCTAGCTTTGTCGGTCAAAACCATTATGAAAATCGTGATATCTT
TAATTCATTGGATCTTGGTTGGTCTTTATTAAGAACTTTCCCAAGCAATCTCCTCAAACG
TATCACTGAAAAAACTATTAAACAATACTATTCACGTTCATCAAAGGGTACTAGATTCAA
CTAACTAAATTTTAAAAAGAAAAAAATATAAATCAAAAAAAAAAAAATAAAATAAAATCT
AAAAATAAAATAAAATAAAAAAAAATTTTAAAAATAAAACTTTTAAAAAAAAAAAAAAAA
AAAAAA
Length of 3' end seq. 296
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -