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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AO06
Library FC
(Link to library)
Clone ID FC-AO06
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15138-1
Original site URL
Representative seq. ID FC-AO06P
(Link to Original site)
Representative DNA sequence 
>FC-AO06 (FC-AO06Q) /CSM/FC/FC-AO/FC-AO06Q.Seq.d/
ATTGAAGGTGATGCATTATCAGCATTAATTTTCAATAAGATGAGAGGTTTACAAGTTTGT
GCAGTTAAAGCACCAGGTTTTGGTGATCTCAAGAGAGTAAACTTACAAGATATTGCAGTT
ATTAGTGGTGCTCAAGTTATTAGTGAAGAATTAGGTGTTAGACTTGAGGATGTTGATATC
ACAATGTTGGGTAGTGCAAAGAAGATCACCATCGATAGTGATAGTACCATCATTTTAGAT
GGTGCCGGTGACAAAGCAGCAATTCAAGAACGTGTCGAATTAATTCGTGAATCACTCACT
CGTACAACCTCTGATTATGACAAGACTCAACTCGAAACTCGTTTGGGCAAAGATGGTGGT
GGTGTTGCTGTTATTCGTGTCGGTGGAGCTTCAGAGGTTGAAGTTGGCGAAAAGAAGGAT
CGTATCACCGATGCCCTCAACGCCACAAAGGCTGCCGTCGAAGAAGGTATTGTTCCAGGT
GGTGGCACAGCACTCCTCTACTCTACTTTAGCACTCAAGAAAATTAAAATGGATAACTTT
GATCAAACCATTGGTGTAAAGATCGTTAGAGATGCCCTTTTAATCCCATGTAAAACAATC
GCAAAXXXXXXXXXXCCACTGAAGCTATGGTAGTTGAAATTAAAAAAGATACTCCAATGC
CACAAATGCCACCACAAATGGATTATTAAAAAATATAAATAAAGATTTTTAAAAAAAAAA
AAAAAAAAAAAAAAAAATTAAAATTAAAATAATTAAGATTTTAAAAAGTTATTTTTATTT
TTGTTTTTATTTTTAAATTATTATAAAA
sequence update 1997. 3.28
Translated Amino Acid sequence 
IEGDALSALIFNKMRGLQVCAVKAPGFGDLKRVNLQDIAVISGAQVISEELGVRLEDVDI
TMLGSAKKITIDSDSTIILDGAGDKAAIQERVELIRESLTRTTSDYDKTQLETRLGKDGG
GVAVIRVGGASEVEVGEKKDRITDALNATKAAVEEGIVPGGGTALLYSTLALKKIKMDNF
DQTIGVKIVRDALLIPCKTIA---

---TEAMVVEIKKDTPMPQMPPQMDY*ki*ikifkkkkkkkkklklk*lrf*kvififvf
ifkll*
Translated Amino Acid sequence (All Frames) 
Frame A:
IEGDALSALIFNKMRGLQVCAVKAPGFGDLKRVNLQDIAVISGAQVISEELGVRLEDVDI
TMLGSAKKITIDSDSTIILDGAGDKAAIQERVELIRESLTRTTSDYDKTQLETRLGKDGG
GVAVIRVGGASEVEVGEKKDRITDALNATKAAVEEGIVPGGGTALLYSTLALKKIKMDNF
DQTIGVKIVRDALLIPCKTIA---

---plklw*lklkkilqchkchhkwiikkyk*rflkkkkkkkkn*n*nn*dfkklflflf
lflnyyk

Frame B:
lkvmhyqh*fsir*evykfvqlkhqvlvisre*tykilqllvvlkllvkn*vldlrmlis
qcwvvqrrspsivivpsf*mvpvtkqqfknvsn*fvnhslvqplimtrlnsklvwakmvv
vlllfvsvelqrlklakrrivspmpstpqrlpskkvlfqvvaqhsstll*hsrklkwitl
ikplv*rslempf*shvkqsq---

---h*sygs*n*krysnatnattngllkninkdf*kkkkkkkkikikiikilksyfyfcf
yf*iiik

Frame C:
*r*ciisinfq*derftslcs*strfw*sqeskltrycsy*wcssy**rirc*t*gc*yh
nvg*ckedhhr***yhhfrwcr*qssnsrtcrins*ithsynl*l*qdstrnsfgqrwww
cccyscrwsfrg*swrkegsyhrcpqrhkgcrrrrycsrwwhstpllyfstqen*ng*l*
snhwckdr*rcpfnpm*nnrk---

---TEAMVVEIKKDTPMPQMPPQMDY*ki*ikifkkkkkkkkklklk*lrf*kvififvf
ifkll*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AO06 (FC-AO06Q) /CSM/FC/FC-AO/FC-AO06Q.Seq.d/                     1348   0.0
SLB321 (SLB321Q) /CSM/SL/SLB3-A/SLB321Q.Seq.d/                        747   0.0
SFH320 (SFH320Q) /CSM/SF/SFH3-A/SFH320Q.Seq.d/                        611   e-174
VSE435 (VSE435Q) /CSM/VS/VSE4-B/VSE435Q.Seq.d/                        577   e-163
VFB833 (VFB833Q) /CSM/VF/VFB8-B/VFB833Q.Seq.d/                        321   9e-87
VSE277 (VSE277Q) /CSM/VS/VSE2-D/VSE277Q.Seq.d/                        145   1e-33
VSA431 (VSA431Q) /CSM/VS/VSA4-B/VSA431Q.Seq.d/                         38   0.20
SSG587 (SSG587Q) /CSM/SS/SSG5-D/SSG587Q.Seq.d/                         38   0.20
VSJ732 (VSJ732Q) /CSM/VS/VSJ7-B/VSJ732Q.Seq.d/                         36   0.80
VHK704 (VHK704Q) /CSM/VH/VHK7-A/VHK704Q.Seq.d/                         36   0.80
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U72247|U72247.1 Dictyostelium discoideum chaperonin 60 (hspA) mRNA, complete cds.   678  0.0  3
AF359268|AF359268.1 Dictyostelium discoideum chaperonin 60 gene, complete cds; nuclear gene for mitochondrial product.   678  0.0  3
AF085694|AF085694.1 Candida albicans heat shock protein 60 (HSP60) gene, complete cds.    54  1e-19  4
AX489110|AX489110.1 Sequence 6410 from Patent WO02053728.         54  9e-18  4
AF355773|AF355773.1 Bartonella birtlesii 60 KDa heat shock protein (groEl) gene, partial cds.    48  3e-16  4
AF071194|AF071194.1 Bartonella sp. FC7049UT 60 kDa heat shock protein (groEL) gene, partial cds.    56  1e-15  3
AY033884|AY033884.1 Neocallimastix patriciarum heat shock protein 60 precursor (Hsp60) mRNA, complete cds.    56  1e-11  3
U52924|U52924.1 Naegleria fowleri cpn-60 gene, partial cds.       80  5e-11  1
AL430802|AL430802.1 clone XBA0AB001B01 of library XBA0AB from strain CLIB 210 of  Kluyveromyces lactis.    48  1e-10  3
AY078242|AY078242.1 Piromyces sp. E2 heat shock protein 60 (HSP60.2) mRNA, partial cds.    56  2e-10  2
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF359268_1(AF359268|pid:none) Dictyostelium discoideum chaperoni...   321   1e-86
(Q05045) RecName: Full=Chaperonin CPN60-1, mitochondrial; AltNam...   213   7e-54
(Q05046) RecName: Full=Chaperonin CPN60-2, mitochondrial; AltNam...   211   2e-53
(P29197) RecName: Full=Chaperonin CPN60, mitochondrial; AltName:...   211   3e-53
S20876(S20876;S19837) chaperonin hsp60 precursor - Arabidopsis t...   211   3e-53
(Q43298) RecName: Full=Chaperonin CPN60-2, mitochondrial; AltNam...   211   3e-53
S26583(S26583) chaperonin hsp60 - maize  &Z12115_1(Z12115|pid:no...   211   3e-53
(P29185) RecName: Full=Chaperonin CPN60-1, mitochondrial; AltNam...   209   8e-53
S26582(S26582) chaperonin hsp60 - maize  &Z12114_1(Z12114|pid:no...   209   8e-53
AC161864_25(AC161864|pid:none) Medicago truncatula clone mth2-69...   209   8e-53
protein update 2009. 4.13
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for FC-AO06 is cyt
5' end seq. ID FC-AO06F
5' end seq. 
>FC-AO06F.Seq
ATTGAAGGTGATGCATTATCAGCATTAATTTTCAATAAGATGAGAGGTTTACAAGTTTGT
GCAGTTAAAGCACCAGGTTTTGGTGATCTCAAGAGAGTAAACTTACAAGATATTGCAGTT
ATTAGTGGTGCTCAAGTTATTAGTGAAGAATTAGGTGTTAGACTTGAGGATGTTGATATC
ACAATGTTGGGTAGTGCAAAGAAGATCACCATCGATAGTGATAGTACCATCATTTTAGAT
GGTGCCGGTGACAAAGCAGCAATTCAAGAACGTGTCGAATTAATTCGTGAATCACTCACT
CGTACAACCTCTGATTATGACAAGACTCAACTCGAAACTCGTTTGGGCAAAGATGGTGGT
GGTGTTGCTGTTATTCGTGTCGGTGGAGCTTCAGAGGTTGAAGTTGGCGAAAAGAAGGAT
CGTATCACCGATGCCCTCAACGCCACAAAGGCTGCCGTCGAAGAAGGTATTGTTCCAGGT
GGTGGCACAGCACTCCTCTACTCTACTTTAGCACTCAAGAAAATTAAAATGGATAACTTT
GATCAAACCATTGGTGTAAAGATCGTTAGAGATGCCCTTTTAATCCCATGTAAAACAATC
GCAAA----------
Length of 5' end seq. 605
3' end seq. ID FC-AO06Z
3' end seq. 
>FC-AO06Z.Seq
----------CCACTGAAGCTATGGTAGTTGAAATTAAAAAAGATACTCCAATGCCACAA
ATGCCACCACAAATGGATTATTAAAAAATATAAATAAAGATTTTTAAAAAAAAAAAAAAA
AAAAAAAAAAAATTAAAATTAAAATAATTAAGATTTTAAAAAGTTATTTTTATTTTTGTT
TTTATTTTTAAATTATTATAAAA
Length of 3' end seq. 193
Connected seq. ID FC-AO06P
Connected seq. 
>FC-AO06P.Seq
ATTGAAGGTGATGCATTATCAGCATTAATTTTCAATAAGATGAGAGGTTTACAAGTTTGT
GCAGTTAAAGCACCAGGTTTTGGTGATCTCAAGAGAGTAAACTTACAAGATATTGCAGTT
ATTAGTGGTGCTCAAGTTATTAGTGAAGAATTAGGTGTTAGACTTGAGGATGTTGATATC
ACAATGTTGGGTAGTGCAAAGAAGATCACCATCGATAGTGATAGTACCATCATTTTAGAT
GGTGCCGGTGACAAAGCAGCAATTCAAGAACGTGTCGAATTAATTCGTGAATCACTCACT
CGTACAACCTCTGATTATGACAAGACTCAACTCGAAACTCGTTTGGGCAAAGATGGTGGT
GGTGTTGCTGTTATTCGTGTCGGTGGAGCTTCAGAGGTTGAAGTTGGCGAAAAGAAGGAT
CGTATCACCGATGCCCTCAACGCCACAAAGGCTGCCGTCGAAGAAGGTATTGTTCCAGGT
GGTGGCACAGCACTCCTCTACTCTACTTTAGCACTCAAGAAAATTAAAATGGATAACTTT
GATCAAACCATTGGTGTAAAGATCGTTAGAGATGCCCTTTTAATCCCATGTAAAACAATC
GCAAA----------CCACTGAAGCTATGGTAGTTGAAATTAAAAAAGATACTCCAATGC
CACAAATGCCACCACAAATGGATTATTAAAAAATATAAATAAAGATTTTTAAAAAAAAAA
AAAAAAAAAAAAAAAAATTAAAATTAAAATAATTAAGATTTTAAAAAGTTATTTTTATTT
TTGTTTTTATTTTTAAATTATTATAAAA
Length of connected seq. 798
Full length Seq ID -
Full length Seq. -
Length of full length seq. -