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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AO01
Library FC
(Link to library)
Clone ID FC-AO01
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15674-1
Original site URL
Representative seq. ID FC-AO01Z
(Link to Original site)
Representative DNA sequence 
>FC-AO01 (FC-AO01Q) /CSM/FC/FC-AO/FC-AO01Q.Seq.d/
XXXXXXXXXXCGTCGTTGTTGGTGATCACAACGGTCATGTAGGTCTCGGTGTTAAATGCG
CTAAGGAAGTTGCCACCGCCATTTCTGGTGCTATCGTTGCTGCCAAATTATCAGTCATCC
CAGTTCGTCGTGGTTATTGGGGTAACAAACTCGGTGCTCCACACACTGTCCCAACCAAAG
TCACTGGTAAATGCGGTTCCGTCGCTGTACGTCTCGTTCCAGCCCCAAGAGGTACTGGTA
TCGTTGCTGCTCGTGTTCCAAAGAAATTACTCCAATATGCTGGTGTTGATGATGTTTACA
CATCTTCACGTGGTAAGACCAGAACCATGGGTAACTTTGTCATGGCCACTTTCTTCGCCA
TCACCAAGACCTTTGCTTACTTAACCCCAGATCTTTGGAGAGAAGTCAAATTAATCAAGA
CTCCATACCAAGAACACTCTGCCAAATTATCCGAAAAACAACAATAAATCAACTTTAATT
AATTTTTTACTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
sequence update 1997. 3.22
Translated Amino Acid sequence 
---VVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKV
TGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNFVMATFFAI
TKTFAYLTPDLWREVKLIKTPYQEHSAKLSEKQQ*infn*fftvlkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---VVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKV
TGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNFVMATFFAI
TKTFAYLTPDLWREVKLIKTPYQEHSAKLSEKQQ*infn*fftvlkkkkkkkkkkkkkkk


Frame B:
---sllvittvm*vsvlnalrklpppflvlsllpnyqssqfvvvigvtnsvlhtlsqpks
lvnavpslyvsfqpqevlvslllvfqrnysnmlvlmmfthlhvvrpepwvtlswplssps
prpllt*pqifgeksn*srlhtkntlpnypknnnkstlinfllf*kkkkkkkkkkkkkkk


Frame C:
---rcw*sqrscrsrc*mr*gschrhfwcyrccqiishpssswllg*qtrcsthcpnqsh
w*mrfrrctsrsspkrywyrccscskeitpicwc**clhiftw*dqnhg*lchghflrhh
qdlcllnprslersqinqdsiprtlcqiirkttinql*lifycfkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AO01 (FC-AO01Q) /CSM/FC/FC-AO/FC-AO01Q.Seq.d/                      963   0.0
SLK563 (SLK563Q) /CSM/SL/SLK5-C/SLK563Q.Seq.d/                        955   0.0
SLE490 (SLE490Q) /CSM/SL/SLE4-D/SLE490Q.Seq.d/                        955   0.0
SLC152 (SLC152Q) /CSM/SL/SLC1-C/SLC152Q.Seq.d/                        955   0.0
FC-BA12 (FC-BA12Q) /CSM/FC/FC-BA/FC-BA12Q.Seq.d/                      955   0.0
FC-AC19 (FC-AC19Q) /CSM/FC/FC-AC/FC-AC19Q.Seq.d/                      955   0.0
FC-AA13 (FC-AA13Q) /CSM/FC/FC-AA/FC-AA13Q.Seq.d/                      955   0.0
VHC440 (VHC440Q) /CSM/VH/VHC4-B/VHC440Q.Seq.d/                        944   0.0
VFE388 (VFE388Q) /CSM/VF/VFE3-D/VFE388Q.Seq.d/                        924   0.0
VHC570 (VHC570Q) /CSM/VH/VHC5-C/VHC570Q.Seq.d/                        922   0.0
own update 2002.10. 6
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X56297|X56297.1 D.discoideum LLRep3 mRNA.                        906  0.0  1
BG023147|BG023147.1 dab12b06.x1 NICHD XGC Sp1 Xenopus laevis cDNA clone IMAGE:4174042 3' similar to SW:RS2_HUMAN P15880 40S RIBOSOMAL PROTEIN S2 ;, mRNA sequence.    58  5e-12  3
BG160061|BG160061.1 df30e01.y1 Wellcome CRC pRN3 head Xenopus laevis cDNA clone IMAGE:3580104 5' similar to SW:RS2_MOUSE P25444 40S RIBOSOMAL PROTEIN S2 ;, mRNA sequence.    48  2e-11  3
CD327156|CD327156.1 AGENCOURT_14148083 NICHD_XGC_Eye1 Xenopus laevis cDNA clone IMAGE:6949661 5', mRNA sequence.    48  3e-11  3
BJ057044|BJ057044.1 Xenopus laevis cDNA clone:XL033n15, 3' end, single read.    48  4e-11  3
BG552641|BG552641.1 df45f06.x1 Wellcome CRC pRN3 head Xenopus laevis cDNA clone IMAGE:3581339 3' similar to SW:RS2_HUMAN P15880 40S RIBOSOMAL PROTEIN S2 ;, mRNA sequence.    48  5e-11  3
BJ069593|BJ069593.1 Xenopus laevis cDNA clone:XL053o07, 5' end, single read.    48  5e-11  3
BG578898|BG578898.1 de98f01.y1 Wellcome CRC pRN3 St19 26 Xenopus laevis cDNA clone IMAGE:3549817 5' similar to SW:RS2_MOUSE P25444 40S RIBOSOMAL PROTEIN S2 ;, mRNA sequence.    48  5e-11  3
BG162988|BG162988.1 df28d05.y1 Wellcome CRC pRN3 head Xenopus laevis cDNA clone IMAGE:3579704 5' similar to SW:RS2_HUMAN P15880 40S RIBOSOMAL PROTEIN S2 ;, mRNA sequence.    48  5e-11  3
BI446159|BI446159.1 dai36e08.y2 NICHD XGC Sp1 Xenopus laevis cDNA clone IMAGE:4963695 5' similar to SW:RS2_MOUSE P25444 40S RIBOSOMAL PROTEIN S2 ;, mRNA sequence.    48  5e-11  3
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P27685) RecName: Full=40S ribosomal protein S2; AltName: Full=R...   275   4e-73
AY088743_1(AY088743|pid:none) Arabidopsis thaliana clone 93867 m...   211   9e-54
AB008017_1(AB008017|pid:none) Arabidopsis thaliana RF12 mRNA, pa...   211   9e-54
(Q93VB8) RecName: Full=40S ribosomal protein S2-2;  &AB076984_1(...   211   9e-54
(Q8L8Y0) RecName: Full=40S ribosomal protein S2-1;  &AB008016_1(...   211   9e-54
AC135958_8(AC135958|pid:none) Oryza sativa chromosome 3 BAC OSJN...   211   1e-53
AY961548_1(AY961548|pid:none) Lysiphlebus testaceipes ribosomal ...   210   2e-53
AP003943_18(AP003943|pid:none) Oryza sativa Japonica Group genom...   210   2e-53
AY085726_1(AY085726|pid:none) Arabidopsis thaliana clone 17415 m...   210   2e-53
EF146355_1(EF146355|pid:none) Populus trichocarpa clone WS0117_H...   210   2e-53
protein update 2009. 4.13
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.31  top: 0.73  tms: 0.07  mit: 0.08  mip: 0.14
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for FC-AO01 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-AO01Z
3' end seq. 
>FC-AO01Z.Seq
----------CGTCGTTGTTGGTGATCACAACGGTCATGTAGGTCTCGGTGTTAAATGCG
CTAAGGAAGTTGCCACCGCCATTTCTGGTGCTATCGTTGCTGCCAAATTATCAGTCATCC
CAGTTCGTCGTGGTTATTGGGGTAACAAACTCGGTGCTCCACACACTGTCCCAACCAAAG
TCACTGGTAAATGCGGTTCCGTCGCTGTACGTCTCGTTCCAGCCCCAAGAGGTACTGGTA
TCGTTGCTGCTCGTGTTCCAAAGAAATTACTCCAATATGCTGGTGTTGATGATGTTTACA
CATCTTCACGTGGTAAGACCAGAACCATGGGTAACTTTGTCATGGCCACTTTCTTCGCCA
TCACCAAGACCTTTGCTTACTTAACCCCAGATCTTTGGAGAGAAGTCAAATTAATCAAGA
CTCCATACCAAGAACACTCTGCCAAATTATCCGAAAAACAACAATAAATCAACTTTAATT
AATTTTTTACTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
Length of 3' end seq. 533
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -