>FC-AN19 (FC-AN19Q) /CSM/FC/FC-AN/FC-AN19Q.Seq.d/
ATGAGACTTCTTATTTCATGTATTTTAATACTTTCAATTTTGGTAAACTTTATCAGTGGT
CATGCTGTTTTAGTNNCACCAACCCCATTTTCTACCAACCCAAGTAAAACTAAACTATGT
GGTGGTGGTACAAAACAAACTGTTGCACAAATTACTTGGTGTCCAAACTCAAGCAAAACA
AACAGAGCCACATGGAAAATTGTTGTTGGTGATGGTGCAGGTGCAGTCACATTTAAATTA
GCAACTAATGGTGGAACAACAGAAGGTGATTTCACTACCACATTAACAAGTAAAGTTCTT
TCAGGTAGTGATCCAAAGGAAGTTGGAACTTATTATATGGATGTCACAGTTCCAACTGGT
ACCACATGCACAGGTACCAATGGTATTTGTACACTCCAAGCCTACACAGAAAGCAGTGGT
TGGTATTCATGCTCAGCTATTAAACTTGACTCAAGTGCTTGTGATAAAGCAGCAGAAGAA
ACCGCTTTGGTCGAATACAATGTCCAAGTTAAAGATAATGTCAAATTCTGTGATCAAGTT
GTCAACAAAGTTGTTTTACTCCCAGCCGGTACACAATTAGGTGAATACGATCAAAGAACT
CXXXXXXXXXXTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

MRLLISCILILSILVNFISGHAVLVXPTPFSTNPSKTKLCGGGTKQTVAQITWCPNSSKT
NRATWKIVVGDGAGAVTFKLATNGGTTEGDFTTTLTSKVLSGSDPKEVGTYYMDVTVPTG
TTCTGTNGICTLQAYTESSGWYSCSAIKLDSSACDKAAEETALVEYNVQVKDNVKFCDQV
VNKVVLLPAGTQLGEYDQRT---

---FFFFFFFLKKKKKKKKKKKKKKKKKKKKKKK

Frame A:
MRLLISCILILSILVNFISGHAVLVXPTPFSTNPSKTKLCGGGTKQTVAQITWCPNSSKT
NRATWKIVVGDGAGAVTFKLATNGGTTEGDFTTTLTSKVLSGSDPKEVGTYYMDVTVPTG
TTCTGTNGICTLQAYTESSGWYSCSAIKLDSSACDKAAEETALVEYNVQVKDNVKFCDQV
VNKVVLLPAGTQLGEYDQRT---

---FFFFFFFLKKKKKKKKKKKKKKKKKKKKKKK

Frame B:
*dflfhvf*yfqfw*tlsvvmlf*xhqphflptqvklnyvvvvqnkllhkllgvqtqakq
tephgklllvmvqvqshln*qlmveqqkvislph*qvkffqvviqrkleliiwmsqfqlv
phaqvpmvfvhskptqkavvgihaqllnltqvlvikqqkkplwsntmsklkimsnsvikl
stklfysqpvhn*vntikel---

---fffffff*kkkkkkkkkkkkkkkkkkkkkkk

Frame C:
etsyfmyfntfnfgklyqwsccfsxtnpifyqpk*n*tmwwwyktncctnylvsklkqnk
qshmenccw*wcrcshi*isn*wwnnrr*fhyhink*ssfr**skgswnllygchssnwy
hmhryqwylytpslhrkqwlvfmlsy*t*lkcl**ssrrnrfgriqcps*r*cqil*ssc
qqscftpsrytir*irskn---

---fffffffkkkkkkkkkkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK140 (VSK140Q) /CSM/VS/VSK1-B/VSK140Q.Seq.d/                       1179   0.0
VHJ339 (VHJ339Q) /CSM/VH/VHJ3-B/VHJ339Q.Seq.d/                       1179   0.0
FC-AN19 (FC-AN19Q) /CSM/FC/FC-AN/FC-AN19Q.Seq.d/                     1179   0.0
FC-245 (FC-245Q) /CSM/CG/CG-FC/FC-245Q.Seq.d/                        1179   0.0
VFH641 (VFH641Q) /CSM/VF/VFH6-B/VFH641Q.Seq.d/                       1166   0.0
FC-AW02 (FC-AW02Q) /CSM/FC/FC-AW/FC-AW02Q.Seq.d/                     1126   0.0
VHG376 (VHG376Q) /CSM/VH/VHG3-D/VHG376Q.Seq.d/                        995   0.0
VFD405 (VFD405Q) /CSM/VF/VFD4-A/VFD405Q.Seq.d/                        983   0.0
VFG184 (VFG184Q) /CSM/VF/VFG1-D/VFG184Q.Seq.d/                        904   0.0
VFC290 (VFC290Q) /CSM/VF/VFC2-D/VFC290Q.Seq.d/                        688   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC138392|AC138392.2 Homo sapiens chromosome 1 clone RP11-181C21, complete sequence.    46  0.57  1
AX747532|AX747532.1 Sequence 1057 from Patent EP1308459.          46  0.57  1
AK092412|AK092412.1 Homo sapiens cDNA FLJ35093 fis, clone PLACE6006137.    46  0.57  1
AC124955|AC124955.21 Medicago truncatula clone mth2-12l24, WORKING DRAFT SEQUENCE, 19 unordered pieces.    46  0.57  1
AC111634|AC111634.4 Rattus norvegicus clone CH230-97M21, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46  0.57  1
AC128230|AC128230.2 Rattus norvegicus clone CH230-57K8, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46  0.57  1
CD654932|CD654932.1 AGENCOURT_14540201 NIA Human H1 Embryonic Stem Cell cDNA Library (Long) Homo sapiens cDNA clone IMAGE:30421584 5', mRNA sequence.    46  0.57  1
BX537792|BX537792.1 Homo sapiens mRNA; cDNA DKFZp686M07166 (from clone DKFZp686M07166); complete cds.    46  0.57  1
BI548927|BI548927.1 603189070F1 NIH_MGC_95 Homo sapiens cDNA clone IMAGE:5260553 5', mRNA sequence.    46  0.57  1
AC103227|AC103227.5 Rattus norvegicus clone CH230-177H5, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46  0.57  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UI0) RecName: Full=Uncharacterized transmembrane protein DDB...   301   2e-80
AE007870_217(AE007870|pid:none) Agrobacterium tumefaciens str. C...    33   6.2

 psg: 0.97  gvh: 0.70  alm: 0.46  top: 0.43  tms: 0.00  mit: 0.47  mip: 0.11
 nuc: 1.54  erl: 0.00  erm: 1.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for FC-AN19 is nuc

>FC-AN19F.Seq
ATGAGACTTCTTATTTCATGTATTTTAATACTTTCAATTTTGGTAAACTTTATCAGTGGT
CATGCTGTTTTAGTNNCACCAACCCCATTTTCTACCAACCCAAGTAAAACTAAACTATGT
GGTGGTGGTACAAAACAAACTGTTGCACAAATTACTTGGTGTCCAAACTCAAGCAAAACA
AACAGAGCCACATGGAAAATTGTTGTTGGTGATGGTGCAGGTGCAGTCACATTTAAATTA
GCAACTAATGGTGGAACAACAGAAGGTGATTTCACTACCACATTAACAAGTAAAGTTCTT
TCAGGTAGTGATCCAAAGGAAGTTGGAACTTATTATATGGATGTCACAGTTCCAACTGGT
ACCACATGCACAGGTACCAATGGTATTTGTACACTCCAAGCCTACACAGAAAGCAGTGGT
TGGTATTCATGCTCAGCTATTAAACTTGACTCAAGTGCTTGTGATAAAGCAGCAGAAGAA
ACCGCTTTGGTCGAATACAATGTCCAAGTTAAAGATAATGTCAAATTCTGTGATCAAGTT
GTCAACAAAGTTGTTTTACTCCCAGCCGGTACACAATTAGGTGAATACGATCAAAGAACT
C----------