FC-AN03
Library FC
(Link to library)
Clone ID FC-AN03
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15136-1
Original site URL
Representative seq. ID FC-AN03F
(Link to Original site)
Representative DNA sequence
>FC-AN03 (FC-AN03Q) /CSM/FC/FC-AN/FC-AN03Q.Seq.d/
AACAGACACATTTTTTAAAATAATTAATTAAATAAATAATTAAATAAATAAATAATAAAT
AATTTTAAATTTTAAATAAAAAAGTAATAATAATTATAATAATAATTATAATNNNNNNNN
NNATNATANTNNTNNTNNNNNNNNNNNNNNNNNNNNGCNTAATTTANNNNNNNNNAAATA
AAATAAAAAAAAAACAATATAAAAATAATTTAAATAATGAATAAAGATGAAGAATTTTTA
GAAGAACATCATTATAAAGATGATGATGCAATTGAAGGAGAAGAGGAACAAGGAGAAGAA
GAAGAGTCTGATTXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAT
ATTCAAATAAAATAATTGTATAATATTATAAAAAA
sequence update 1997. 3. 7
Translated Amino Acid sequence
nrhif*nn*lnk*lnk*iinnfkf*ikk***l***l*xxxxxxxxxxxxxxxa*fxxxxi
k*kknnikii*IMNKDEEFLEEHHYKDDDAIEGEEEQGEEEESD---

---KKKKKKKKKKKTYSNKIIV*yykk


Translated Amino Acid sequence (All Frames)
Frame A:
nrhif*nn*lnk*lnk*iinnfkf*ikk***l***l*xxxxxxxxxxxxxxxa*fxxxxi
k*kknnikii*IMNKDEEFLEEHHYKDDDAIEGEEEQGEEEESD---

---KKKKKKKKKKKTYSNKIIV*yykk

Frame B:
tdtffkiin*inn*ink**iilnfk*ksnnnynnnynxxxxxxxxxxxxxxxxnlxxxk*
nkkkti*k*fk**ikmknf*kniiikmmmqlkekrnkekkksli---

---kkkkkkkkkkkhiqik*lyniik

Frame C:
qthflk*lik*iik*innk*f*ilnkkviiiiiiiixxxxxixxxxxxxxxxxixxxxnk
ikkkqyknnlnne*r*rifrrtsl*r**cn*rrrgtrrrrrv*---

---kkkkkkkkkknifk*nnciil*k

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AN03 (FC-AN03Q) /CSM/FC/FC-AN/FC-AN03Q.Seq.d/ 236 2e-61
CHN766 (CHN766Q) /CSM/CH/CHN7-C/CHN766Q.Seq.d/ 46 4e-04
SLE486 (SLE486Q) /CSM/SL/SLE4-D/SLE486Q.Seq.d/ 42 0.006
VHM246 (VHM246Q) /CSM/VH/VHM2-B/VHM246Q.Seq.d/ 40 0.024
VHG476 (VHG476Q) /CSM/VH/VHG4-D/VHG476Q.Seq.d/ 40 0.024
VHF309 (VHF309Q) /CSM/VH/VHF3-A/VHF309Q.Seq.d/ 40 0.024
VHE406 (VHE406Q) /CSM/VH/VHE4-A/VHE406Q.Seq.d/ 40 0.024
VHE306 (VHE306Q) /CSM/VH/VHE3-A/VHE306Q.Seq.d/ 40 0.024
VHB710 (VHB710Q) /CSM/VH/VHB7-A/VHB710Q.Seq.d/ 40 0.024
VFO535 (VFO535Q) /CSM/VF/VFO5-B/VFO535Q.Seq.d/ 40 0.024

own update 2004. 5.31
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 228 1e-68 3
AL353752|AL353752.6 Human DNA sequence from clone RP11-497K15 on chromosome 9. 52 0.005 1
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 48 0.009 4
AP003416|AP003416.4 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456E05. 48 0.009 5
AC091071|AC091071.1 Oryza sativa chromosome 1 clone P0456E05, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces. 48 0.009 5
AC110426|AC110426.5 Rattus norvegicus clone CH230-228M16, WORKING DRAFT SEQUENCE, 2 unordered pieces. 48 0.013 2
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 34 0.018 7
AC022976|AC022976.3 Homo sapiens chromosome 7 clone RP11-516F3 map 7, WORKING DRAFT SEQUENCE, 16 unordered pieces. 50 0.020 1
AC124884|AC124884.4 Rattus norvegicus clone CH230-357C21, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 50 0.020 1
AQ235739|AQ235739.1 HS_2015_B2_F03_T7 CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=2015 Col=6 Row=L, genomic survey sequence. 50 0.020 1
dna update 2003. 7.11
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 112,920,242
protein update 2009. 4.13
PSORT

psg: 0.75 gvh: -0.07 alm: 0.85 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.44 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for FC-AN03 is nuc

5' end seq. ID FC-AN03F
5' end seq.
>FC-AN03F.Seq
AACAGACACATTTTTTAAAATAATTAATTAAATAAATAATTAAATAAATAAATAATAAAT
AATTTTAAATTTTAAATAAAAAAGTAATAATAATTATAATAATAATTATAATNNNNNNNN
NNATNATANTNNTNNTNNNNNNNNNNNNNNNNNNNNGCNTAATTTANNNNNNNNNAAATA
AAATAAAAAAAAAACAATATAAAAATAATTTAAATAATGAATAAAGATGAAGAATTTTTA
GAAGAACATCATTATAAAGATGATGATGCAATTGAAGGAGAAGAGGAACAAGGAGAAGAA
GAAGAGTCTGATT----------
Length of 5' end seq. 313
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -