>FC-AM19 (FC-AM19Q) /CSM/FC/FC-AM/FC-AM19Q.Seq.d/
ACATAATGTCTGAACAAATCAAAAAGCGTACTTTCAAAAAGTTCACATACTCTGGTGTTG
CCTTAGAGAGTCTCCTTGACTTAAAGGAAGAACAATTAATTTCATTATTGAGATGTCGTG
CTCGTAGAAAGTTAAGACGTGAAACCCCAATCAAACACGTCAACTTCTTAAAGAAATGCA
GAGCCTCAAAAGCCGCCGTTACCCAAGTCGGTGAAAAACCAGCCCTCGTCAAAACCCACG
CTCGTAACATTTTAATTGTTCCAGAAATGATCGGTTCTGTCATTGGTATCTACAACGGTA
AAGTTTTCAATCAAGTTGAAGTTAAACCAGAAATGATTGGTCACTACACTGGTGAATTCT
CACTCTCATACAAGAGTGTCAACCATGGTCGTCCAGGTATTGGTGCTACTCACTCTTCAA
GATTCATCCCATTGAAGTAGATTTTTTATATATCTCTTGTAGCTTTGTTTTAAAATAATA
AAGTGATAAAGTTATAAACAGTAGTAATAGTAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

IMSEQIKKRTFKKFTYSGVALESLLDLKEEQLISLLRCRARRKLRRETPIKHVNFLKKCR
ASKAAVTQVGEKPALVKTHARNILIVPEMIGSVIGIYNGKVFNQVEVKPEMIGHYTGEFS
LSYKSVNHGRPGIGATHSSRFIPLK*ifyislvalf*nnkvikl*tvvivekkkkkkkkk
k

Frame A:
t*clnksksvlsksshtlvlp*rvslt*rknn*fhy*dvvlves*dvkpqsntsts*rna
epqkpplpksvknqpsskptlvtf*lfqk*svlslvsttvkfsiklklnqk*lvttlvns
hshtrvstmvvqvlvlltlqdssh*srffiyll*lcfkiik**sykq****kkkkkkkkk
kk


Frame B:
hnv*tnqkayfqkvhilwcclresp*lkgrtinfiiemscs*kvkt*npnqtrqllkemq
slksrrypsr*ktsprqnprs*hfncsrndrfchwylqr*sfqss*s*trndwslhw*il
tliqecqpwssrywcyslfkihpievdflyiscsfvlk**sdkvinssnsrkkkkkkkkk
k


Frame C:
IMSEQIKKRTFKKFTYSGVALESLLDLKEEQLISLLRCRARRKLRRETPIKHVNFLKKCR
ASKAAVTQVGEKPALVKTHARNILIVPEMIGSVIGIYNGKVFNQVEVKPEMIGHYTGEFS
LSYKSVNHGRPGIGATHSSRFIPLK*ifyislvalf*nnkvikl*tvvivekkkkkkkkk
k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFM738 (VFM738Q) /CSM/VF/VFM7-B/VFM738Q.Seq.d/                       1017   0.0
FC-AM19 (FC-AM19Q) /CSM/FC/FC-AM/FC-AM19Q.Seq.d/                     1017   0.0
FC-230 (FC-230Q) /CSM/CG/CG-FC/FC-230Q.Seq.d/                        1017   0.0
VSF361 (VSF361Q) /CSM/VS/VSF3-C/VSF361Q.Seq.d/                       1003   0.0
VSA505 (VSA505Q) /CSM/VS/VSA5-A/VSA505Q.Seq.d/                       1001   0.0
VSB707 (VSB707Q) /CSM/VS/VSB7-A/VSB707Q.Seq.d/                        999   0.0
VSF290 (VSF290Q) /CSM/VS/VSF2-D/VSF290Q.Seq.d/                        995   0.0
VSE495 (VSE495Q) /CSM/VS/VSE4-D/VSE495Q.Seq.d/                        995   0.0
VSE589 (VSE589Q) /CSM/VS/VSE5-D/VSE589Q.Seq.d/                        993   0.0
VSE759 (VSE759Q) /CSM/VS/VSE7-C/VSE759Q.Seq.d/                        985   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL400252|AL400252.1 T3 end of clone AS0AA020E04 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.   101   1e-17  1
CK105186|CK105186.1 I076P40.5pR Populus senescing leaves cDNA library Populus tremula cDNA clone I076P40 5', mRNA sequence.    64   2e-17  2
T37532|T37532.1 EST102680 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    96   2e-17  2
T37414|T37414.1 EST102534 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    96   3e-17  2
D11386|D11386.1 Saccharomyces cerevisiae mRNA for ribosomal protein S21, complete cds.    96   3e-17  2
Z74782|Z74782.1 S.cerevisiae chromosome XV reading frame ORF YOL040c.    96   9e-17  2
D11387|D11387.1 Saccharomyces cerevisiae gene for ribosomal protein S21, complete cds.    96   1e-16  2
CB083063|CB083063.1 hn65h03.g1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hn65h03, mRNA sequence.    76   3e-16  2
T37264|T37264.1 EST102356 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    90   1e-15  2
BI126497|BI126497.1 I076P40P Populus leaf cDNA library Populus tremula x Populus tremuloides cDNA, mRNA sequence.    64   2e-15  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY741683_1(AY741683|pid:none) Aedes aegypti 40S ribosomal protei...   171   1e-41
EU195429_1(EU195429|pid:none) Mucor racemosus strain PTCC 5305 p...   170   3e-41
AM048956_1(AM048956|pid:none) Eucinetus sp. APV-2005 mRNA for ri...   168   7e-41
AY620991_1(AY620991|pid:none) Branchiostoma belcheri tsingtaunes...   167   1e-40
AM048967_1(AM048967|pid:none) Scarabaeus laticollis mRNA for rib...   167   2e-40
AF526224_1(AF526224|pid:none) Argopecten irradians isolate iolsa...   166   3e-40
AY561511_1(AY561511|pid:none) Danio rerio ribosomal protein S15 ...   166   4e-40
AY961526_1(AY961526|pid:none) Lysiphlebus testaceipes ribosomal ...   166   4e-40
AF400212_1(AF400212|pid:none) Spodoptera frugiperda ribosomal pr...   166   5e-40
EF207951_1(EF207951|pid:none) Heliconius melpomene ribosomal pro...   166   5e-40

 psg: 0.67  gvh: 0.37  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for FC-AM19 is nuc

>FC-AM19E.Seq
ACATAATGTCTGAACAAATCAAAAAGCGTACTTTCAAAAAGTTCACATACTCTGGTGTTG
CCTTAGAGAGTCTCCTTGACTTAAAGGAAGAACAATTAATTTCATTATTGAGATGTCGTG
CTCGTAGAAAGTTAAGACGTGAAACCCCAATCAAACACGTCAACTTCTTAAAGAAATGCA
GAGCCTCAAAAGCCGCCGTTACCCAAGTCGGTGAAAAACCAGCCCTCGTCAAAACCCACG
CTCGTAACATTTTAATTGTTCCAGAAATGATCGGTTCTGTCATTGGTATCTACAACGGTA
AAGTTTTCAATCAAGTTGAAGTTAAACCAGAAATGATTGGTCACTACACTGGTGAATTCT
CACTCTCATACAAGAGTGTCAACCATGGTCGTCCAGGTATTGGTGCTACTCACTCTTCAA
GATTCATCCCATTGAAGTAGATTTTTTATATATCTCTTGTAGCTTTGTTTTAAAATAATA
AAGTGATAAAGTTATAAACAGTAGTAATAGTAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA