FC-AM18
Library FC
(Link to library)
Clone ID FC-AM18
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15973-1
Original site URL
Representative seq. ID FC-AM18P
(Link to Original site)
Representative DNA sequence
>FC-AM18 (FC-AM18Q) /CSM/FC/FC-AM/FC-AM18Q.Seq.d/
GACGGCAACAGCATCATCAACATCATCACCAACATCACCACCACCATCATCACCACCAAA
TTTATCAGTTCAACAACAACAGCAGCAACAGCAACAACAACAATTAAGACAACAACAACA
ACAACTTCAACAACAAATTGAACAAATGCAACAGTTAATGAATGAAGAGGAAGCTCAACA
AAAGGATGATAGTTTAGGAGAGAAAGGATCAGTATCTATGGAGAATTTAGCATATTTAGA
TCAACCGATTTATATTAGTAATGATGCACCAACTGAACCATTTATAGTTTGTCAAATTTG
GGGTTGTGGTCAATTATTCACAGCTAGGGAATACAGAAATCATTTGGAGAATGAACATGA
TTCTTTGAATTGTAATGCAAATGGTAATCAAAATTACTTTAGTGGATATAACCATAATAA
CAATGGAGTCGATGTAATTAGCTATTCACAATTAACCGATAGAAATTCAATGGATAGATA
TTCAAAGGGTAGTTTACCTGTGTTAATCAATGGTTTACCAAAGAATTGGAATATTTCAAA
CTATXXXXXXXXXXTTTTAAACAATCAAATGATATAATTTTAGCAGATTTATTTAAAGCT
ATTTTATTGGATTATTTTAGTCGTTGTAATTATTGGATTAATAATCAAAATCAATATATT
TTAAAAGAGAATCAATCAATATTATTCGTTGCAGATAAGGAACAAAAGTATTGGAATAGT
TATGGTGTTGAATTAAAGAATCAATCAGTTTATCAACAAATTCTAATGGCATTACAAGAG
GGTTTCATTCTATCCTCTTCAACATTATTGGTTAATAATTCAATCATTAGTAAAAGACAA
TTCCAAGAACAATTAAAACAACAACAAAGAAATTCAAAACCAATCATTACAATTAATCAT
CCTCATCAAAATTTTTATCATCCTTATTTATCTCAAAGATTTTTATTATCTTCTTCAACT
CCAAATACTACCACTACTTCCGCTACTACTTCAACATCATCATTATTATCTTCTTCCTCT
AAAAATCTATTAAATATAATCGATCAAATTAATGTAATAGATAGTAATTTTTGTGATAAT
TTAAAGAAAATCACTCATGATTTAAATTTTATTTTGATTTCAATTGCAACAAGATAAAAA
TAAAAAAAAAAAATAAAAAAATAAACAAAAATAAAATATTTTAATGAAAATTAAAAAA
sequence update 1997. 2.27
Translated Amino Acid sequence
TATASSTSSPTSPPPSSPPNLSVQQQQQQQQQQQLRQQQQQLQQQIEQMQQLMNEEEAQQ
KDDSLGEKGSVSMENLAYLDQPIYISNDAPTEPFIVCQIWGCGQLFTAREYRNHLENEHD
SLNCNANGNQNYFSGYNHNNNGVDVISYSQLTDRNSMDRYSKGSLPVLINGLPKNWNISN
Y---

---FKQSNDIILADLFKAILLDYFSRCNYWINNQNQYILKENQSILFVADKEQKYWNSYG
VELKNQSVYQQILMALQEGFILSSSTLLVNNSIISKRQFQEQLKQQQRNSKPIITINHPH
QNFYHPYLSQRFLLSSSTPNTTTTSATTSTSSLLSSSSKNLLNIIDQINVIDSNFCDNLK
KITHDLNFILISIATR*k*kkkikk*tkikyfnen*k


Translated Amino Acid sequence (All Frames)
Frame A:
dgnsiiniitnitttiittkfisstttaatatttikttttttsttn*tnatvne*rgsst
kg**frrerisiygefsifrstdly***ctn*tiyslsnlglwsiihs*giqksfge*t*
ffel*ckw*skll*wi*p**qwsrcn*lftinr*kfng*ifkg*ftcvnqwftkeleyfk
l---

---f*tik*ynfsrfi*syfiglf*sl*lld**sksiyfkresiniircr*gtkvle*lw
c*ikesislstnsngitrgfhsilfniig**fnh**ktiprtiktttkkfktnhyn*sss
skflsslfiskifiiffnskyyhyfryyfniiiiiffl*ksikynrsn*cnr**fl**fk
enhs*fkfyfdfncnkikikkknkkinknkif**klk

Frame B:
TATASSTSSPTSPPPSSPPNLSVQQQQQQQQQQQLRQQQQQLQQQIEQMQQLMNEEEAQQ
KDDSLGEKGSVSMENLAYLDQPIYISNDAPTEPFIVCQIWGCGQLFTAREYRNHLENEHD
SLNCNANGNQNYFSGYNHNNNGVDVISYSQLTDRNSMDRYSKGSLPVLINGLPKNWNISN
Y---

---FKQSNDIILADLFKAILLDYFSRCNYWINNQNQYILKENQSILFVADKEQKYWNSYG
VELKNQSVYQQILMALQEGFILSSSTLLVNNSIISKRQFQEQLKQQQRNSKPIITINHPH
QNFYHPYLSQRFLLSSSTPNTTTTSATTSTSSLLSSSSKNLLNIIDQINVIDSNFCDNLK
KITHDLNFILISIATR*k*kkkikk*tkikyfnen*k

Frame C:
rqqhhqhhhqhhhhhhhhqiyqfnnnssnsnnnn*dnnnnnfnnklnkcns**mkrklnk
rmiv*erkdqylwri*hi*inrfilvmmhqlnhl*fvkfgvvvnysqlgnteiiwrmnmi
l*ivmqmvikitlvditiitmesm*laihn*pieiqwidiqrvvylc*smvyqrigifqt
---

---lnnqmi*f*qiylklfywiilvvviigliikinif*krinqyyslqirnksigivmv
ln*rinqfinkf*whykrvsfyplqhywliiqslvkdnsknn*nnnkeiqnqslqliili
kifiiliylkdfyyllqlqilpllplllqhhhyyllplkiy*i*siklm**ivifvii*r
kslmi*ilf*fqlqqdknkkkk*knkqk*nilmkikk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AM18 (FC-AM18Q) /CSM/FC/FC-AM/FC-AM18Q.Seq.d/ 1887 0.0
AFB539 (AFB539Q) /CSM/AF/AFB5-B/AFB539Q.Seq.d/ 42 0.019
VSI108 (VSI108Q) /CSM/VS/VSI1-A/VSI108Q.Seq.d/ 40 0.077
VFG316 (VFG316Q) /CSM/VF/VFG3-A/VFG316Q.Seq.d/ 40 0.077
VFD639 (VFD639Q) /CSM/VF/VFD6-B/VFD639Q.Seq.d/ 40 0.077
SSJ803 (SSJ803Q) /CSM/SS/SSJ8-A/SSJ803Q.Seq.d/ 40 0.077
SSE725 (SSE725Q) /CSM/SS/SSE7-B/SSE725Q.Seq.d/ 40 0.077
SSC878 (SSC878Q) /CSM/SS/SSC8-D/SSC878Q.Seq.d/ 40 0.077
SLE108 (SLE108Q) /CSM/SL/SLE1-A/SLE108Q.Seq.d/ 40 0.077
SLB792 (SLB792Q) /CSM/SL/SLB7-D/SLB792Q.Seq.d/ 40 0.077

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 40 8e-05 11
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 42 0.002 11
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence. 34 0.008 13
AC004710|AC004710.3 Plasmodium falciparum chromosome 12, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 36 0.012 8
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 48 0.013 15
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 42 0.024 10
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 46 0.032 7
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 34 0.058 9
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 42 0.061 9
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 32 0.064 15
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FM992693_133(FM992693|pid:none) Candida dubliniensis CD36 chromo... 41 0.070
AL034559_46(AL034559|pid:none) Plasmodium falciparum MAL3P7, com... 40 0.20
(Q6BNU7) RecName: Full=5'-3' exoribonuclease 2; EC=3.1.... 39 0.35
AL844507_76(AL844507|pid:none) Plasmodium falciparum 3D7 chromos... 39 0.35
AL031745_47(AL031745|pid:none) Plasmodium falciparum DNA from MA... 39 0.45
(Q54UA9) RecName: Full=Probable serine/threonine-protein kinase ... 38 0.59
AM910987_272(AM910987|pid:none) Plasmodium knowlesi strain H chr... 38 0.59
AL844509_294(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 37 1.0
AE014188_55(AE014188|pid:none) Plasmodium falciparum 3D7 chromos... 37 1.0
AE014187_291(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 37 1.0
protein update 2009. 4.13
PSORT

psg: 0.84 gvh: 0.39 alm: 0.38 top: 0.47 tms: 0.00 mit: 0.41 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: mitochondrial
32.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for FC-AM18 is mit

5' end seq. ID FC-AM18F
5' end seq.
>FC-AM18F.Seq
GACGGCAACAGCATCATCAACATCATCACCAACATCACCACCACCATCATCACCACCAAA
TTTATCAGTTCAACAACAACAGCAGCAACAGCAACAACAACAATTAAGACAACAACAACA
ACAACTTCAACAACAAATTGAACAAATGCAACAGTTAATGAATGAAGAGGAAGCTCAACA
AAAGGATGATAGTTTAGGAGAGAAAGGATCAGTATCTATGGAGAATTTAGCATATTTAGA
TCAACCGATTTATATTAGTAATGATGCACCAACTGAACCATTTATAGTTTGTCAAATTTG
GGGTTGTGGTCAATTATTCACAGCTAGGGAATACAGAAATCATTTGGAGAATGAACATGA
TTCTTTGAATTGTAATGCAAATGGTAATCAAAATTACTTTAGTGGATATAACCATAATAA
CAATGGAGTCGATGTAATTAGCTATTCACAATTAACCGATAGAAATTCAATGGATAGATA
TTCAAAGGGTAGTTTACCTGTGTTAATCAATGGTTTACCAAAGAATTGGAATATTTCAAA
CTAT----------
Length of 5' end seq. 544
3' end seq. ID FC-AM18Z
3' end seq.
>FC-AM18Z.Seq
----------TTTTAAACAATCAAATGATATAATTTTAGCAGATTTATTTAAAGCTATTT
TATTGGATTATTTTAGTCGTTGTAATTATTGGATTAATAATCAAAATCAATATATTTTAA
AAGAGAATCAATCAATATTATTCGTTGCAGATAAGGAACAAAAGTATTGGAATAGTTATG
GTGTTGAATTAAAGAATCAATCAGTTTATCAACAAATTCTAATGGCATTACAAGAGGGTT
TCATTCTATCCTCTTCAACATTATTGGTTAATAATTCAATCATTAGTAAAAGACAATTCC
AAGAACAATTAAAACAACAACAAAGAAATTCAAAACCAATCATTACAATTAATCATCCTC
ATCAAAATTTTTATCATCCTTATTTATCTCAAAGATTTTTATTATCTTCTTCAACTCCAA
ATACTACCACTACTTCCGCTACTACTTCAACATCATCATTATTATCTTCTTCCTCTAAAA
ATCTATTAAATATAATCGATCAAATTAATGTAATAGATAGTAATTTTTGTGATAATTTAA
AGAAAATCACTCATGATTTAAATTTTATTTTGATTTCAATTGCAACAAGATAAAAATAAA
AAAAAAAAATAAAAAAATAAACAAAAATAAAATATTTTAATGAAAATTAAAAAA
Length of 3' end seq. 644
Connected seq. ID FC-AM18P
Connected seq.
>FC-AM18P.Seq
GACGGCAACAGCATCATCAACATCATCACCAACATCACCACCACCATCATCACCACCAAA
TTTATCAGTTCAACAACAACAGCAGCAACAGCAACAACAACAATTAAGACAACAACAACA
ACAACTTCAACAACAAATTGAACAAATGCAACAGTTAATGAATGAAGAGGAAGCTCAACA
AAAGGATGATAGTTTAGGAGAGAAAGGATCAGTATCTATGGAGAATTTAGCATATTTAGA
TCAACCGATTTATATTAGTAATGATGCACCAACTGAACCATTTATAGTTTGTCAAATTTG
GGGTTGTGGTCAATTATTCACAGCTAGGGAATACAGAAATCATTTGGAGAATGAACATGA
TTCTTTGAATTGTAATGCAAATGGTAATCAAAATTACTTTAGTGGATATAACCATAATAA
CAATGGAGTCGATGTAATTAGCTATTCACAATTAACCGATAGAAATTCAATGGATAGATA
TTCAAAGGGTAGTTTACCTGTGTTAATCAATGGTTTACCAAAGAATTGGAATATTTCAAA
CTAT----------TTTTAAACAATCAAATGATATAATTTTAGCAGATTTATTTAAAGCT
ATTTTATTGGATTATTTTAGTCGTTGTAATTATTGGATTAATAATCAAAATCAATATATT
TTAAAAGAGAATCAATCAATATTATTCGTTGCAGATAAGGAACAAAAGTATTGGAATAGT
TATGGTGTTGAATTAAAGAATCAATCAGTTTATCAACAAATTCTAATGGCATTACAAGAG
GGTTTCATTCTATCCTCTTCAACATTATTGGTTAATAATTCAATCATTAGTAAAAGACAA
TTCCAAGAACAATTAAAACAACAACAAAGAAATTCAAAACCAATCATTACAATTAATCAT
CCTCATCAAAATTTTTATCATCCTTATTTATCTCAAAGATTTTTATTATCTTCTTCAACT
CCAAATACTACCACTACTTCCGCTACTACTTCAACATCATCATTATTATCTTCTTCCTCT
AAAAATCTATTAAATATAATCGATCAAATTAATGTAATAGATAGTAATTTTTGTGATAAT
TTAAAGAAAATCACTCATGATTTAAATTTTATTTTGATTTCAATTGCAACAAGATAAAAA
TAAAAAAAAAAAATAAAAAAATAAACAAAAATAAAATATTTTAATGAAAATTAAAAAA
Length of connected seq. 1188
Full length Seq ID -
Full length Seq. -
Length of full length seq. -