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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AM17
Library FC
(Link to library)
Clone ID FC-AM17
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID FC-AM17Z
(Link to Original site)
Representative DNA sequence 
>FC-AM17 (FC-AM17Q) /CSM/FC/FC-AM/FC-AM17Q.Seq.d/
XXXXXXXXXXAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTTGCTGGTAAACA
ATTAGAAGATGGTCGTACTCTCTCTGATTACAATATTCAAAAGGAATCAACTCTTCACTT
AGTTTTAAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACTAT
CACTTTAGAAGTTGAAGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATTCAAGATAA
AGAAGGTATTCCACCAGATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGG
TCGTACTCTTTCTGATTATAACATTCAAAAGGAGTCCACTCTCCATTTAGTTCTTAGATT
AAGAGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACTATCACCTTGGAGGT
TGAAGGATCTGATAATATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCC
ACCAGATCAACAACGTCTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTC
TGATTACAATATTCAAAAAGAATCAACTCTCCACTTAGTTTTAAGATTAAGAGGTGGTCT
TTAAAAACTATAAATAAAACCACTTGTAAATATGTAAATCAAATTTCAATAAAAAAAAAA
AAAACAATTTTTGTTACTTTATTTTGAAAACCATTTAAAAAAAAAAAA
sequence update 1997. 2.11
Translated Amino Acid sequence 
---EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
LEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
GGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
YNIQKESTLHLVLRLRGGL*kl*ikplvnm*ikfq*kkkkqflllyfenhlkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---kkvfhqinnvsfllvnn*kmvvlslitifkrnqlft*f*d*evvcksllklslvkls
l*klkvliilkm*rlkfkikkvfhqinkd*slpvnn*kmvvlfliitfkrsplsi*fld*
evvcksllklslvklspwrlkdliilkmlkpkfkikkvfhqinnvsfllvnn*kmvvlsl
itifkknqlst*f*d*evvfknyk*nhl*icksnfnkkkknnfcyfilkti*kkk


Frame B:
---rrystrsttshfcw*tirrwsysl*lqyskginsslsfkikrwyanlc*nshw*nyh
frs*rf**y*kckg*nsr*rrystrstkinlcr*tirrwsysf*l*hskgvhspfss*ik
rwyanlc*nshw*nyhlgg*ri**y*kc*sqnsr*rrystrsttshfcw*tirrwsysl*
lqyskrinsplsfkikrwslktinkttckyvnqisikkkktifvtlf*kpfkkkk


Frame C:
---EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
LEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
GGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
YNIQKESTLHLVLRLRGGL*kl*ikplvnm*ikfq*kkkkqflllyfenhlkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK786 (SSK786Q) /CSM/SS/SSK7-D/SSK786Q.Seq.d/                       1269   0.0
SSK744 (SSK744Q) /CSM/SS/SSK7-B/SSK744Q.Seq.d/                       1269   0.0
SSG546 (SSG546Q) /CSM/SS/SSG5-B/SSG546Q.Seq.d/                       1269   0.0
SSF760 (SSF760Q) /CSM/SS/SSF7-C/SSF760Q.Seq.d/                       1269   0.0
SSC659 (SSC659Q) /CSM/SS/SSC6-C/SSC659Q.Seq.d/                       1269   0.0
FC-AM17 (FC-AM17Q) /CSM/FC/FC-AM/FC-AM17Q.Seq.d/                     1269   0.0
SSC328 (SSC328Q) /CSM/SS/SSC3-B/SSC328Q.Seq.d/                       1247   0.0
AHB847 (AHB847Q) /CSM/AH/AHB8-B/AHB847Q.Seq.d/                       1201   0.0
SSG538 (SSG538Q) /CSM/SS/SSG5-B/SSG538Q.Seq.d/                       1174   0.0
SSH628 (SSH628Q) /CSM/SS/SSH6-B/SSH628Q.Seq.d/                       1162   0.0
own update 2002.11.29
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.  1263  0.0  1
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.  1235  0.0  1
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   922  0.0  2
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   761  0.0  2
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   595  0.0  2
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   690  0.0  3
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   690  0.0  3
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   690  0.0  3
U23957|U23957.1 Dictyostelium discoideum P52D mRNA, complete cds.   276  e-134  5
CB305323|CB305323.1 102 Iso cDNA Isotricha sp. BBF-2003 cDNA clone I102 similar to ubiquitin, mRNA sequence.   289  e-110  2
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   365   e-100
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   365   e-100
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   363   2e-99
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   363   2e-99
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   363   2e-99
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   356   4e-97
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   356   4e-97
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   356   4e-97
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   356   4e-97
FJ438516_1(FJ438516|pid:none) Epinephelus coioides ubiquitin C v...   354   1e-96
protein update 2009. 4.13
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 1.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for FC-AM17 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-AM17Z
3' end seq. 
>FC-AM17Z.Seq
----------AAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTTGCTGGTAAACA
ATTAGAAGATGGTCGTACTCTCTCTGATTACAATATTCAAAAGGAATCAACTCTTCACTT
AGTTTTAAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACTAT
CACTTTAGAAGTTGAAGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATTCAAGATAA
AGAAGGTATTCCACCAGATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGG
TCGTACTCTTTCTGATTATAACATTCAAAAGGAGTCCACTCTCCATTTAGTTCTTAGATT
AAGAGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACTATCACCTTGGAGGT
TGAAGGATCTGATAATATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCC
ACCAGATCAACAACGTCTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTC
TGATTACAATATTCAAAAAGAATCAACTCTCCACTTAGTTTTAAGATTAAGAGGTGGTCT
TTAAAAACTATAAATAAAACCACTTGTAAATATGTAAATCAAATTTCAATAAAAAAAAAA
AAAACAATTTTTGTTACTTTATTTTGAAAACCATTTAAAAAAAAAAAA
Length of 3' end seq. 698
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -