>FC-AM16 (FC-AM16Q) /CSM/FC/FC-AM/FC-AM16Q.Seq.d/
CAAAGAATTATTCAAAATGACCCAAAAGAGACGTAATCACGGTAGATCAAAACACGGTCG
TGGTAGTGTTCCATACATCAGATGCACCAACTGTGCTAGATGTGTCCCAAAAGACAAAGC
TGTCAAGAGATTCTACATTAGACCAATCGTCGAAAATGCTGCCGTTAAGGATATTTCAGA
TCAAGGTGTTTTCAACGTCAAAGGTTACAAATTCCCAAGAACCTACGTTAAATCCCAATA
CTGTATTTCATGTGCTATCCACAGTCACATCGTCCGTGTTCGTTCAGTTGCCGACAGAAA
AATCAGAACCAGACCATCCCGTCCAGGTGTCAAGAAACCAACTGCTGCCAAATAAAATGA
TTAACAATAAATTTCTTTTGTTATCTCTTTAAAAAAAATATAAAAAAAAGAAACATTTAT
TTAAAATCTTAAA

knysk*PKRDVITVDQNTVVVVFHTSDAPTVLDVSQKTKLSRDSTLDQSSKMLPLRIFQI
KVFSTSKVTNSQEPTLNPNTVFHVLSTVTSSVFVQLPTEKSEPDHPVQVSRNQLLPNKMI
NNKFLLLSL*kkykkkkhlfkil

Frame A:
qriiqndpket*sr*iktrsw*csihqmhqlc*mcpkrqscqeilh*tnrrkccr*gyfr
srcfqrqrlqipknlr*ipilyfmcypqshrpcsfscrqknqnqtipsrcqetnccqik*
ltinffcylfkknikkrniylks*


Frame B:
kelfkmtqkrrnhgrskhgrgsvpyirctncarcvpkdkavkrfyirpivenaavkdisd
qgvfnvkgykfprtyvksqyciscaihshivrvrsvadrkirtrpsrpgvkkptaak*nd
*q*isfvislkki*kketfi*nlk


Frame C:
knysk*PKRDVITVDQNTVVVVFHTSDAPTVLDVSQKTKLSRDSTLDQSSKMLPLRIFQI
KVFSTSKVTNSQEPTLNPNTVFHVLSTVTSSVFVQLPTEKSEPDHPVQVSRNQLLPNKMI
NNKFLLLSL*kkykkkkhlfkil

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB888 (VHB888Q) /CSM/VH/VHB8-D/VHB888Q.Seq.d/                        773   0.0
VFD371 (VFD371Q) /CSM/VF/VFD3-C/VFD371Q.Seq.d/                        773   0.0
FC-AM16 (FC-AM16Q) /CSM/FC/FC-AM/FC-AM16Q.Seq.d/                      773   0.0
VSJ770 (VSJ770Q) /CSM/VS/VSJ7-C/VSJ770Q.Seq.d/                        771   0.0
VSJ518 (VSJ518Q) /CSM/VS/VSJ5-A/VSJ518Q.Seq.d/                        765   0.0
VSE310 (VSE310Q) /CSM/VS/VSE3-A/VSE310Q.Seq.d/                        765   0.0
VHB673 (VHB673Q) /CSM/VH/VHB6-D/VHB673Q.Seq.d/                        735   0.0
VHH106 (VHH106Q) /CSM/VH/VHH1-A/VHH106Q.Seq.d/                        733   0.0
SSI121 (SSI121Q) /CSM/SS/SSI1-A/SSI121Q.Seq.d/                        731   0.0
VFA569 (VFA569Q) /CSM/VF/VFA5-C/VFA569Q.Seq.d/                        729   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BM394842|BM394842.1 50072-2-6-D01.f.2 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    36   0.001  3
BQ475194|BQ475194.1 cicindela3a07.b Cicindela campestris cDNA Cicindela campestris cDNA clone cicindela3a07 5', mRNA sequence.    54   0.002  1
BQ475449|BQ475449.1 cicindela3a07.g Cicindela campestris cDNA Cicindela campestris cDNA clone cicindela3a07 3', mRNA sequence.    54   0.002  1
AT006588|AT006588.1 Araneus ventricosus mRNA, clone:Av3161.        52   0.006  1
M84022|M84022.1 Chlamydomonas reinhardtii chloroplast Cp47 apoprotein of photosystem II reaction centers (pbsB) gene, complete cds.    34   0.26   2
X59731|X59731.1 C.reinhartii psbB 5' flanking region.              34   0.29   2
BF268648|BF268648.1 GA__Eb0002H01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0002H01f, mRNA sequence.    46   0.39   1
AJ513597|AJ513597.1 Gossypium hirsutum EST, clone suo25h09r3.      46   0.39   1
AJ513558|AJ513558.1 Gossypium hirsutum EST, clone suo25e05r3.      46   0.39   1
AJ513189|AJ513189.1 Gossypium hirsutum EST, clone su187d03r3.      46   0.39   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54TL8) RecName: Full=40S ribosomal protein S26;                     234   7e-61
AK339893_1(AK339893|pid:none) Acyrthosiphon pisum ACYPI000091 mR...   141   8e-33
AY857483_1(AY857483|pid:none) Suberites domuncula S26 mRNA, comp...   137   1e-31
AY099673_1(AY099673|pid:none) Arabidopsis thaliana 40S ribosomal...   137   2e-31
GM963134_1(GM963134|pid:none) Sequence 10088 from Patent WO20081...   135   3e-31
EU139193_1(EU139193|pid:none) Flustra foliacea putative 40S ribo...   135   3e-31
GM960533_1(GM960533|pid:none) Sequence 7487 from Patent WO200814...   135   4e-31
GM960535_1(GM960535|pid:none) Sequence 7489 from Patent WO200814...   135   4e-31
GM960537_1(GM960537|pid:none) Sequence 7491 from Patent WO200814...   135   4e-31
GM960545_1(GM960545|pid:none) Sequence 7499 from Patent WO200814...   134   1e-30

 psg: 0.89  gvh: 0.38  alm: 0.39  top: 0.30  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for FC-AM16 is cyt

>FC-AM16E.Seq
CAAAGAATTATTCAAAATGACCCAAAAGAGACGTAATCACGGTAGATCAAAACACGGTCG
TGGTAGTGTTCCATACATCAGATGCACCAACTGTGCTAGATGTGTCCCAAAAGACAAAGC
TGTCAAGAGATTCTACATTAGACCAATCGTCGAAAATGCTGCCGTTAAGGATATTTCAGA
TCAAGGTGTTTTCAACGTCAAAGGTTACAAATTCCCAAGAACCTACGTTAAATCCCAATA
CTGTATTTCATGTGCTATCCACAGTCACATCGTCCGTGTTCGTTCAGTTGCCGACAGAAA
AATCAGAACCAGACCATCCCGTCCAGGTGTCAAGAAACCAACTGCTGCCAAATAAAATGA
TTAACAATAAATTTCTTTTGTTATCTCTTTAAAAAAAATATAAAAAAAAGAAACATTTAT
TTAAAATCTTAAA