>FC-AM15 (FC-AM15Q) /CSM/FC/FC-AM/FC-AM15Q.Seq.d/
XXXXXXXXXXATAAATGGTCTTTCAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCA
GTTGATGTTAAAATTGTCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATT
ACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCA
ATTCCAAAACTTACTCCACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACA
CATACACCATATGACTATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACT
GGCCAAGTTACAGTTATTAAAAAAGATGAGACATTCCCAAAGAATATGACTGTTACACAA
GATGATAATACATCTTTCATCTTTAACTTAAACTCTGAAAAATAAAACAATATGTTTTTT
TTTCTCTTTAAGAAAACTTTAAATAATAAAATTATGAATTTCAGAAATTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---KWSFKFQVLPGAFQWAVDVKIVNKVNSTAGSYEMTITPYQVDKVACKDGDDFVQLPI
PKLTPPDSEIVSHLTVRQTHTPYDYVVNGSVYFKYSPTTGQVTVIKKDETFPKNMTVTQD
DNTSFIFNLNSEK*nnmffflfkktlnnkimnfrn*kkkkkkkkkkkkkk

Frame A:
---*mvfqvpsltrsfsmgs*c*ncqqs*fncwfi*ndhysips**gclqrw**lcsian
sktystrf*nc*pfnsssntyti*lcckwkcll*ilpnnwpsysy*kr*dipkeydcytr
**yifhl*lkl*kikqyvffsl*enfk**nyefqklkkkkkkkkkkkkkk


Frame B:
---KWSFKFQVLPGAFQWAVDVKIVNKVNSTAGSYEMTITPYQVDKVACKDGDDFVQLPI
PKLTPPDSEIVSHLTVRQTHTPYDYVVNGSVYFKYSPTTGQVTVIKKDETFPKNMTVTQD
DNTSFIFNLNSEK*nnmffflfkktlnnkimnfrn*kkkkkkkkkkkkkk


Frame C:
---nglsssksyqelfngqlmlklstkliqllvhmk*pllhtklirllakmvmtlfncqf
qnllhqilkllai*qfvkhihhmtml*mevftlntpqqlaklqllkkmrhsqri*llhkm
iihlsslt*tlknkticfffslrkl*iikl*iseikkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AM15 (FC-AM15Q) /CSM/FC/FC-AM/FC-AM15Q.Seq.d/                      856   0.0
VSC180 (VSC180Q) /CSM/VS/VSC1-D/VSC180Q.Seq.d/                        842   0.0
VSB653 (VSB653Q) /CSM/VS/VSB6-C/VSB653Q.Seq.d/                        842   0.0
SSM611 (SSM611Q) /CSM/SS/SSM6-A/SSM611Q.Seq.d/                        842   0.0
SSK866 (SSK866Q) /CSM/SS/SSK8-C/SSK866Q.Seq.d/                        842   0.0
SSK494 (SSK494Q) /CSM/SS/SSK4-D/SSK494Q.Seq.d/                        842   0.0
SSJ220 (SSJ220Q) /CSM/SS/SSJ2-A/SSJ220Q.Seq.d/                        842   0.0
SSI642 (SSI642Q) /CSM/SS/SSI6-B/SSI642Q.Seq.d/                        842   0.0
SSI186 (SSI186Q) /CSM/SS/SSI1-D/SSI186Q.Seq.d/                        842   0.0
SSH868 (SSH868Q) /CSM/SS/SSH8-C/SSH868Q.Seq.d/                        842   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U20997|U20997.1 Dictyostelium discoideum putative 25 kDa protein mRNA, partial cds.   632  0.0  4
AF340153|AF340153.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 (cadA) gene, complete cds.   468  0.0  4
U49650|U49650.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 DdCAD-1 (cadA) mRNA, complete cds.   755  0.0  2
AC115089|AC115089.1 Homo sapiens chromosome 18 clone RP11-429L9 map 18, LOW-PASS SEQUENCE SAMPLING.    36  0.34  7
AC022913|AC022913.3 Homo sapiens chromosome 11 clone RP11-746C14 map 11, WORKING DRAFT SEQUENCE, 14 unordered pieces.    40  0.39  5
BZ357365|BZ357365.1 SALK_130634.51.25.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_130634.51.25.x, DNA sequence.    46  0.41  1
AX356393|AX356393.1 Sequence 27 from Patent WO0181622.            36  0.98  2
AX345570|AX345570.1 Sequence 641 from Patent WO0200928.           36  0.98  2
AX281156|AX281156.1 Sequence 21 from Patent WO0177377.            36  0.98  2
AF076973|AF076973.1 Dictyostelium discoideum putative adhesion molecule CAD2 (cad2) mRNA, complete cds.    42  1.2  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...   259   3e-68
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...   221   8e-57
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso...    86   4e-16
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a...    35   1.3
(A4YIG5) RecName: Full=Cysteinyl-tRNA synthetase;          EC=6....    34   1.7
CP000383_1880(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    32   6.6
BA000026_783(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    32   8.6
CP000155_2836(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    32   8.6
AE014187_514(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    32   8.6
EU929888_1(EU929888|pid:none) Streptococcus agalactiae strain AB...    32   8.6

 psg: 0.87  gvh: 0.51  alm: 0.45  top: 0.40  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for FC-AM15 is cyt

>FC-AM15Z.Seq
----------ATAAATGGTCTTTCAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCA
GTTGATGTTAAAATTGTCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATT
ACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCA
ATTCCAAAACTTACTCCACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACA
CATACACCATATGACTATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACT
GGCCAAGTTACAGTTATTAAAAAAGATGAGACATTCCCAAAGAATATGACTGTTACACAA
GATGATAATACATCTTTCATCTTTAACTTAAACTCTGAAAAATAAAACAATATGTTTTTT
TTTCTCTTTAAGAAAACTTTAAATAATAAAATTATGAATTTCAGAAATTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA