>FC-AM14 (FC-AM14Q) /CSM/FC/FC-AM/FC-AM14Q.Seq.d/
AGTAGACAAAGATGGCCGATATTCAAGCTGAAAAAGCTTTCCAAAAGCAACAAGTTTCTT
TCAAAAACAGATTCCAACTTAAAGCCAGCAAAGGTAAAGAAGGTATCAGATATTACAAAA
ATATCGGTCTTGGTTACAGAACCCCAAAGGATGCCATCGAAGGTACCTACATCGATAAGA
AATGTCCATTCACCTCAGACGTTTCAATCCGTGGTGCTATCCTCCGTGGTACCGTCATCT
CAACCAAAATGAGAAGAACCCTTGTTGTCAGAAGAAACTATCTCCACTACATCAAGAAAT
ACAACCGTTTTGAAAAGAGACACTCCAACATCCCAGCCCACGTTTCACCAGCTTTCAACG
TAAAGGAAGGTGACTCTGTTACCATTGGCCAATGTAGACCATTATCCAAAACTGTCAGAT
TCAACGTCATCAAACACGATATCTCTGCTGCCTCAAAGAAACAATTCAAAGCTTTCTAAA
TTTGAAAAATAAATAAATAAAAAAAGTTTTGGTTTTATATTAAAAAAAAAAAA

*TKMADIQAEKAFQKQQVSFKNRFQLKASKGKEGIRYYKNIGLGYRTPKDAIEGTYIDKK
CPFTSDVSIRGAILRGTVISTKMRRTLVVRRNYLHYIKKYNRFEKRHSNIPAHVSPAFNV
KEGDSVTIGQCRPLSKTVRFNVIKHDISAASKKQFKAF*i*kink*kkfwfyikkkk

Frame A:
srqrwpifklkklsksnkflsktdsnlkpakvkkvsditkisvlvtepqrmpskvptsir
nvhspqtfqsvvlssvvpssqpk*eepllseetisttsrnttvlkrdtptsqptfhqlst
*rkvtllplanvdhypklsdstssntisllpqrnnsklskfek*inkksfgfilkkk


Frame B:
vdkdgryss*ksfpkatsffqkqipt*sqqr*rryqilqkyrswlqnpkgchrrylhr*e
msihlrrfnpwcyppwyrhlnqneknpccqkklsplhqeiqpf*ketlqhpsprftsfqr
kgr*lcyhwpm*tiiqncqiqrhqtrylcclketiqsflnlknk*ikkvlvly*kkk


Frame C:
*TKMADIQAEKAFQKQQVSFKNRFQLKASKGKEGIRYYKNIGLGYRTPKDAIEGTYIDKK
CPFTSDVSIRGAILRGTVISTKMRRTLVVRRNYLHYIKKYNRFEKRHSNIPAHVSPAFNV
KEGDSVTIGQCRPLSKTVRFNVIKHDISAASKKQFKAF*i*kink*kkfwfyikkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AM14 (FC-AM14Q) /CSM/FC/FC-AM/FC-AM14Q.Seq.d/                      959   0.0
FC-041 (FC-041Q) /CSM/CG/CG-FC/FC-041Q.Seq.d/                         959   0.0
FC-BJ19 (FC-BJ19Q) /CSM/FC/FC-BJ/FC-BJ19Q.Seq.d/                      952   0.0
VSH717 (VSH717Q) /CSM/VS/VSH7-A/VSH717Q.Seq.d/                        950   0.0
FC-AB23 (FC-AB23Q) /CSM/FC/FC-AB/FC-AB23Q.Seq.d/                      948   0.0
FC-BI23 (FC-BI23Q) /CSM/FC/FC-BI/FC-BI23Q.Seq.d/                      938   0.0
FC-AO24 (FC-AO24Q) /CSM/FC/FC-AO/FC-AO24Q.Seq.d/                      934   0.0
FC-BH05 (FC-BH05Q) /CSM/FC/FC-BH/FC-BH05Q.Seq.d/                      888   0.0
VSE738 (VSE738Q) /CSM/VS/VSE7-B/VSE738Q.Seq.d/                        803   0.0
FC-BN02 (FC-BN02Q) /CSM/FC/FC-BN/FC-BN02Q.Seq.d/                      735   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L17004|L17004.1 Saccharomyces cerevisiae ribosomal protein S18 (RPS18B) gene, complete cds.    58   1e-18  4
Z35917|Z35917.1 S.cerevisiae chromosome II reading frame ORF YBR048w.    58   2e-18  4
Z46260|Z46260.1 S.cerevisiae alphaS288C DNA of remnant delta gene for ribosomal protein S18.    58   4e-16  5
Z35918|Z35918.1 S.cerevisiae chromosome II reading frame ORF YBR049c.    58   1e-13  3
AZ924824|AZ924824.1 4906.id55i03.s1 Saccharomyces mikatae IFO 1815 Saccharomyces mikatae genomic clone 4906.id55i03.s1, DNA sequence.    52   2e-12  3
AL426745|AL426745.1 clone BA0AB014H03 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    40   3e-12  4
Z74321|Z74321.1 S.cerevisiae chromosome IV reading frame ORF YDR025w.    52   4e-12  4
L15408|L15408.1 Yeast ribosomal protein S18 (RPS18A) complete cds; Seryl tRNA transferase (SES1) gene, 3' end.    52   7e-12  4
BM500132|BM500132.1 PAC000000000241 Pioneer AF-1 array Zea mays cDNA, mRNA sequence.    60   2e-11  2
BG369635|BG369635.2 HVSMEi0025E12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010 (20 DAP) Hordeum vulgare cDNA clone HVSMEi0025E12f, mRNA sequence.    66   3e-11  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54S90) RecName: Full=40S ribosomal protein S11;                     290   1e-77
AM263438_1(AM263438|pid:none) Chenopodium rubrum mRNA for 40S ri...   199   5e-50
AM920433_621(AM920433|pid:none) Penicillium chrysogenum Wisconsi...   198   6e-50
AL844502_171(AL844502|pid:none) Plasmodium falciparum 3D7 chromo...   197   1e-49
CP001325_519(CP001325|pid:none) Micromonas sp. RCC299 chromosome...   197   1e-49
FN392320_620(FN392320|pid:none) Pichia pastoris GS115 chromosome...   197   1e-49
CP000497_141(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...   197   2e-49
CS300553_1(CS300553|pid:none) Sequence 61 from Patent EP1661986.      197   2e-49
AM910990_242(AM910990|pid:none) Plasmodium knowlesi strain H chr...   196   3e-49
AY911366_1(AY911366|pid:none) Bos taurus clone IMAGE:7961505 rib...   195   5e-49

 psg: 0.62  gvh: 0.17  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.19  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 92.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for FC-AM14 is cyt

>FC-AM14E.Seq
AGTAGACAAAGATGGCCGATATTCAAGCTGAAAAAGCTTTCCAAAAGCAACAAGTTTCTT
TCAAAAACAGATTCCAACTTAAAGCCAGCAAAGGTAAAGAAGGTATCAGATATTACAAAA
ATATCGGTCTTGGTTACAGAACCCCAAAGGATGCCATCGAAGGTACCTACATCGATAAGA
AATGTCCATTCACCTCAGACGTTTCAATCCGTGGTGCTATCCTCCGTGGTACCGTCATCT
CAACCAAAATGAGAAGAACCCTTGTTGTCAGAAGAAACTATCTCCACTACATCAAGAAAT
ACAACCGTTTTGAAAAGAGACACTCCAACATCCCAGCCCACGTTTCACCAGCTTTCAACG
TAAAGGAAGGTGACTCTGTTACCATTGGCCAATGTAGACCATTATCCAAAACTGTCAGAT
TCAACGTCATCAAACACGATATCTCTGCTGCCTCAAAGAAACAATTCAAAGCTTTCTAAA
TTTGAAAAATAAATAAATAAAAAAAGTTTTGGTTTTATATTAAAAAAAAAAAA