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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AM13
Library FC
(Link to library)
Clone ID FC-AM13
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16203-1
Original site URL
Representative seq. ID FC-AM13E
(Link to Original site)
Representative DNA sequence 
>FC-AM13 (FC-AM13Q) /CSM/FC/FC-AM/FC-AM13Q.Seq.d/
CTCATTCGTCGGTGTTTTATATGGTCTTAGCGTTTTATTTGGCATTTCACATGGTGTCGG
TAAATTAAATNCCTTCAAATCAATTGCCAAAGAAGATTTATCAAAAGAAATTAAAACTAC
TGCTACTGCTGAAAAATCAAAAGCATACCAAGAAGGTTTCGAAGCTGGTGTTAAATCAAC
TCAACCAAAAGCAGGAGGTGTCACTTATGGTAGTGAAATCGAAAAACTCATTGCTGAAAC
CTGTGGTACCAACCTTTTACAACAAAACTAAAATAAACCAACAACAGTAATATAATAATA
TAAATACAAATTCCACATATTTAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 2.11
Translated Amino Acid sequence 
SFVGVLYGLSVLFGISHGVGKLNXFKSIAKEDLSKEIKTTATAEKSKAYQEGFEAGVKST
QPKAGGVTYGSEIEKLIAETCGTNLLQQN*nkpttvi**ykykfhifkkikkkkkkkkkk
kkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
lirrcfiws*rfiwhftwcr*ikxlqincqrrfikrn*nycyc*kiksiprrfrswc*in
stksrrchlw**nrkthc*nlwyqpfttklk*tnnsniii*iqiphi*knkkkkkkkkkk
kkkkkkkk


Frame B:
SFVGVLYGLSVLFGISHGVGKLNXFKSIAKEDLSKEIKTTATAEKSKAYQEGFEAGVKST
QPKAGGVTYGSEIEKLIAETCGTNLLQQN*nkpttvi**ykykfhifkkikkkkkkkkkk
kkkkkkkk


Frame C:
hssvfymvlafylafhmvsvn*xpsnqlpkkiyqkklklllllknqkhtkkvsklvlnql
nqkqevslmvvksknsllkpvvptfynktkinqqq*ynnintnstylkk*kkkkkkkkkk
kkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK142 (VSK142Q) /CSM/VS/VSK1-B/VSK142Q.Seq.d/                        632   0.0
VSH163 (VSH163Q) /CSM/VS/VSH1-C/VSH163Q.Seq.d/                        632   0.0
VSG577 (VSG577Q) /CSM/VS/VSG5-D/VSG577Q.Seq.d/                        632   0.0
VHO746 (VHO746Q) /CSM/VH/VHO7-B/VHO746Q.Seq.d/                        632   0.0
VHG162 (VHG162Q) /CSM/VH/VHG1-C/VHG162Q.Seq.d/                        632   0.0
VFA207 (VFA207Q) /CSM/VF/VFA2-A/VFA207Q.Seq.d/                        632   0.0
FC-AM13 (FC-AM13Q) /CSM/FC/FC-AM/FC-AM13Q.Seq.d/                      632   0.0
SSA638 (SSA638Q) /CSM/SS/SSA6-B/SSA638Q.Seq.d/                        618   e-176
VSC320 (VSC320Q) /CSM/VS/VSC3-A/VSC320Q.Seq.d/                        617   e-176
VHF683 (VHF683Q) /CSM/VH/VHF6-D/VHF683Q.Seq.d/                        613   e-175
own update 2002.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY254473|AY254473.1 Dictyostelium discoideum nucleotide exchange factor RasGEF Q (gefQ) gene, complete cds.   607   e-171  3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34   2e-04  10
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    34   0.003  6
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    34   0.004  7
X57944|X57944.1 Human rotavirus segment 7 gp33 gene.    52   0.006  1
L04534|L04534.1 Rotavirus non-structural protein (NS35) gene, complete cds.    52   0.006  1
AB022770|AB022770.1 Human rotavirus mRNA for NSP2, complete cds.    52   0.006  1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   0.026  10
AC092543|AC092543.3 Homo sapiens BAC clone RP11-291E21 from 4, complete sequence.    42   0.031  4
BX322611|BX322611.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-261O13.    38   0.050  2
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000141_1819(CP000141|pid:none) Carboxydothermus hydrogenoforma...    37   0.22
CP000478_3069(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    33   4.1
CP000497_267(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    32   9.1
CU928165_121(CU928165|pid:none) Kluyveromyces thermotolerans str...    32   9.1
AM494968_122(AM494968|pid:none) Leishmania braziliensis chromoso...    32   9.1
(Q4A5G1) RecName: Full=Trigger factor;          Short=TF;  &AE01...    32   9.1
protein update 2009. 7. 2
PSORT 

 psg: 0.94  gvh: 0.57  alm: 0.35  top: 0.63  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for FC-AM13 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AM13E
Full length Seq. 
>FC-AM13E.Seq
CTCATTCGTCGGTGTTTTATATGGTCTTAGCGTTTTATTTGGCATTTCACATGGTGTCGG
TAAATTAAATNCCTTCAAATCAATTGCCAAAGAAGATTTATCAAAAGAAATTAAAACTAC
TGCTACTGCTGAAAAATCAAAAGCATACCAAGAAGGTTTCGAAGCTGGTGTTAAATCAAC
TCAACCAAAAGCAGGAGGTGTCACTTATGGTAGTGAAATCGAAAAACTCATTGCTGAAAC
CTGTGGTACCAACCTTTTACAACAAAACTAAAATAAACCAACAACAGTAATATAATAATA
TAAATACAAATTCCACATATTTAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 385