FC-AM12
Library FC
(Link to library)
Clone ID FC-AM12
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15060-1
Original site URL
Representative seq. ID FC-AM12E
(Link to Original site)
Representative DNA sequence
>FC-AM12 (FC-AM12Q) /CSM/FC/FC-AM/FC-AM12Q.Seq.d/
CGAAGGTACTCTTGGTATCATAACTGAAGCCGTTATGAAAGTACATGCTGTACCACAAGC
TGTTGAATACTATGGTTTCCTTTTCCCAACTTTTGCTCATGCTGTATCTGCCCTCCAACA
AATTCGTTCCTCAGAGGTTATTCCAACAATGATTCGTGTTTACGATCCAGAGGAAACTCA
ATTAAGTTTTGCTTGGAAACCAAGTAAAGGTGCTGTAAGTGAATTCACAAGTGCAATGGT
TAAAAAGTATCTTCATTACATTCGTTCCTTTGATTTCAAGAATGTTTGTCTCTCTATCAT
TGGTTTCGAAGGTCCAAAGAAGGTTGTAGATTTCCATAGAACTTCAGTTTTCGATATCCT
CTCCAAGAATGCTGCCTTTGGTTTAGGTTCTGCTCCTGGTAAAACTTGGGCCGAAAAAAG
ATATGATCTTCCATATATTCGTGACTTTTTACTCGATCATAATATGTGGGTTGATGTCGC
TGAAACTACTGTCTCCTATGCTAACCTTCAAACACTTTGGAAGGATGCTAAACAAACCTT
TGTCAAACACTTTAAAGATCAAGGTATTCCAGCTTGGATTTGTGCTCACATCTCTCATAC
TTACACTAATGGTGTTTGTCTTTACTTCATTTTCGCCTCCAAACAAAATGAAAACAAAGA
TATGGCTCAATACATTGAAGCAAAGAAACTCATGACTGATATCATCTTCAAATATGGTGG
TTCTCTCTCTCATCATCATGGTGTTGGTTATGAACATGTACCATGGATGACTCGTTATGC
TACAAGAGGTTGGATCAACGTTTATCGTTCTCTCAAAGAAACTATCGATCCAAAAGATAT
TTGTAATCCAAGAAAATTAATTCCAACAATTAAAGAAGAAAATAATAAAGAACCATTCTT
ATTTGATGTTGTTAATGTTAAATATCCAAAACTCTAAAAAAATAAAATAAAATAAAAATT
TTAAAAAAAAAAAAAAA
sequence update 1997. 2.27
Translated Amino Acid sequence
EGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQ
LSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDIL
SKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTF
VKHFKDQGIPAWICAHISHTYTNGVCLYFIFASKQNENKDMAQYIEAKKLMTDIIFKYGG
SLSHHHGVGYEHVPWMTRYATRGWINVYRSLKETIDPKDICNPRKLIPTIKEENNKEPFL
FDVVNVKYPKL*knkik*kf*kkkk


Translated Amino Acid sequence (All Frames)
Frame A:
rryswyhn*sryestccttsc*ilwfpfpnfcsccicpptnsflrgysnndsclrsrgns
ikfcletk*rcck*ihkcng*kvsslhsfl*fqeclslyhwfrrskegcrfp*nfsfryp
lqecclwfrfcsw*nlgrkki*ssiys*lftrs*yvg*cr*nycllc*psntlegc*tnl
cqtl*rsryssldlcshlsylh*wclsllhfrlqtk*kqrygsih*skethd*yhlqiww
fslssswcwl*tctmddslcykrldqrlsfsqrnyrskryl*skkinsnn*rrk**rtil
i*cc*c*isktlkk*nkikilkkkk


Frame B:
EGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQ
LSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDIL
SKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTF
VKHFKDQGIPAWICAHISHTYTNGVCLYFIFASKQNENKDMAQYIEAKKLMTDIIFKYGG
SLSHHHGVGYEHVPWMTRYATRGWINVYRSLKETIDPKDICNPRKLIPTIKEENNKEPFL
FDVVNVKYPKL*knkik*kf*kkkk


Frame C:
kvllvs*lkpl*kymlyhkllntmvsfsqlllmlylpsnkfvpqrlfqq*fvftiqrkln
*vllgnqvkvl*vnsqvqwlksifitfvplisrmfvslslvskvqrrl*isielqfsiss
prmlplv*vlllvklgpkkdmifhifvtfysiiicglmslkllspmltfkhfgrmlnkpl
sntlkikvfqlgfvltsliltlmvfvftsfsppnkmktkiwlntlkqrns*lisssnmvv
lsliimvlvmnmyhg*lvmlqevgstfivlskklsiqkifviqen*fqqlkkkiiknhsy
lmllmlniqnskkik*nknfkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AM12 (FC-AM12Q) /CSM/FC/FC-AM/FC-AM12Q.Seq.d/ 1852 0.0
SFC120 (SFC120Q) /CSM/SF/SFC1-A/SFC120Q.Seq.d/ 1403 0.0
VHK809 (VHK809Q) /CSM/VH/VHK8-A/VHK809Q.Seq.d/ 1384 0.0
VHD371 (VHD371Q) /CSM/VH/VHD3-C/VHD371Q.Seq.d/ 1366 0.0
VFE182 (VFE182Q) /CSM/VF/VFE1-D/VFE182Q.Seq.d/ 1360 0.0
CHD771 (CHD771Q) /CSM/CH/CHD7-C/CHD771Q.Seq.d/ 1348 0.0
AFM816 (AFM816Q) /CSM/AF/AFM8-A/AFM816Q.Seq.d/ 1334 0.0
VFK664 (VFK664Q) /CSM/VF/VFK6-C/VFK664Q.Seq.d/ 1324 0.0
CFG622 (CFG622Q) /CSM/CF/CFG6-A/CFG622Q.Seq.d/ 1300 0.0
VFO571 (VFO571Q) /CSM/VF/VFO5-C/VFO571Q.Seq.d/ 1289 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ010740|AJ010740.1 Dictyostelium discoideum mRNA for alkyl-dihydroxyacetonephosphate synthase. 1852 0.0 1
AP002811|AP002811.1 Homo sapiens genomic DNA, chromosome 11q clone:RP11-876L16, WORKING DRAFT SEQUENCE, 20 unordered pieces. 40 0.086 7
BU770916|BU770916.1 SJEDBC10 SJE Schistosoma japonicum cDNA, mRNA sequence. 36 0.11 2
AC084211|AC084211.19 Homo sapiens 3 BAC RP11-338L18 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 48 0.23 1
BQ125374|BQ125374.1 rc67d12.y1 Meloidogyne hapla egg SL1 TOPO v1 Meloidogyne hapla cDNA similar to TR:Q9UHW8 Q9UHW8 SM-11044 BINDING PROTEIN ;, mRNA sequence. 48 0.23 1
BE578343|BE578343.1 rk11h04.y1 Meloidogyne javanica Egg SL1 Topo1 Kloek Chiapelli McCarter Meloidogyne javanica cDNA 5' similar to WP:Y41D4A_5905.B CE21847 ;, mRNA sequence. 48 0.23 1
BU582680|BU582680.1 rc67d12.y2 Meloidogyne hapla egg SL1 TOPO v1 Meloidogyne hapla cDNA similar to TR:Q9UHW8 Q9UHW8 SM-11044 BINDING PROTEIN ;, mRNA sequence. 48 0.23 1
AL160008|AL160008.3 Human DNA sequence from clone RP5-837D10 on chromosome 1p22.2-31.1. 42 0.64 3
AC102968|AC102968.7 Rattus norvegicus clone CH230-114G11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 46 0.90 1
AC139590|AC139590.2 Rattus norvegicus clone CH230-170K11, WORKING DRAFT SEQUENCE, 23 unordered pieces. 38 1.0 7
dna update 2003.12.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O97157) RecName: Full=Alkyldihydroxyacetonephosphate synthase; ... 259 1e-67
AY328521_1(AY328521|pid:none) Leishmania major alkyl dihydroxyac... 241 4e-62
AM494967_13(AM494967|pid:none) Leishmania braziliensis chromosom... 239 8e-62
CP000249_2625(CP000249|pid:none) Frankia sp. CcI3, complete geno... 209 9e-53
CP000750_997(CP000750|pid:none) Kineococcus radiotolerans SRS302... 188 2e-46
AP009152_1860(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, ... 184 5e-45
CP000774_1665(CP000774|pid:none) Parvibaculum lavamentivorans DS... 175 2e-42
CP000479_2092(CP000479|pid:none) Mycobacterium avium 104, comple... 171 5e-41
CP000509_4535(CP000509|pid:none) Nocardioides sp. JS614, complet... 170 6e-41
AE016958_2004(AE016958|pid:none) Mycobacterium avium subsp. para... 169 1e-40
protein update 2009. 7. 2
PSORT

psg: 0.75 gvh: 0.63 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.08 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
28.0 %: mitochondrial
20.0 %: nuclear
4.0 %: vacuolar
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for FC-AM12 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AM12E
Full length Seq.
>FC-AM12E.Seq
CGAAGGTACTCTTGGTATCATAACTGAAGCCGTTATGAAAGTACATGCTGTACCACAAGC
TGTTGAATACTATGGTTTCCTTTTCCCAACTTTTGCTCATGCTGTATCTGCCCTCCAACA
AATTCGTTCCTCAGAGGTTATTCCAACAATGATTCGTGTTTACGATCCAGAGGAAACTCA
ATTAAGTTTTGCTTGGAAACCAAGTAAAGGTGCTGTAAGTGAATTCACAAGTGCAATGGT
TAAAAAGTATCTTCATTACATTCGTTCCTTTGATTTCAAGAATGTTTGTCTCTCTATCAT
TGGTTTCGAAGGTCCAAAGAAGGTTGTAGATTTCCATAGAACTTCAGTTTTCGATATCCT
CTCCAAGAATGCTGCCTTTGGTTTAGGTTCTGCTCCTGGTAAAACTTGGGCCGAAAAAAG
ATATGATCTTCCATATATTCGTGACTTTTTACTCGATCATAATATGTGGGTTGATGTCGC
TGAAACTACTGTCTCCTATGCTAACCTTCAAACACTTTGGAAGGATGCTAAACAAACCTT
TGTCAAACACTTTAAAGATCAAGGTATTCCAGCTTGGATTTGTGCTCACATCTCTCATAC
TTACACTAATGGTGTTTGTCTTTACTTCATTTTCGCCTCCAAACAAAATGAAAACAAAGA
TATGGCTCAATACATTGAAGCAAAGAAACTCATGACTGATATCATCTTCAAATATGGTGG
TTCTCTCTCTCATCATCATGGTGTTGGTTATGAACATGTACCATGGATGACTCGTTATGC
TACAAGAGGTTGGATCAACGTTTATCGTTCTCTCAAAGAAACTATCGATCCAAAAGATAT
TTGTAATCCAAGAAAATTAATTCCAACAATTAAAGAAGAAAATAATAAAGAACCATTCTT
ATTTGATGTTGTTAATGTTAAATATCCAAAACTCTAAAAAAATAAAATAAAATAAAAATT
TTAAAAAAAAAAAAAAA
Length of full length seq. 977