FC-AL21
Library FC
(Link to library)
Clone ID FC-AL21
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15131-1
Original site URL
Representative seq. ID FC-AL21E
(Link to Original site)
Representative DNA sequence
>FC-AL21 (FC-AL21Q) /CSM/FC/FC-AL/FC-AL21Q.Seq.d/
GAAAATGCCTTCATTCGCTGATTTAACTACTGAAAACGGTCTTGTCGAATTAAACAAATT
TGTCAGTGACAAAACTTACATTGTTGGTTTTGTTCCATCAAGTGCTGATGTCCAAGCCTT
CAACTTAGTTAAAACCGCACCATGTGCCACTAAATACCCACATGCTGCCAGATGGTTCAA
TACCATTGCCTCATACAGTGCTGCCGAACAAGGTCAATTCGAAAAAGTTACCGAAACCGT
CACTATTGCCGCCCCAGCTGCACCAAAAGCTGATGATGACGTTGATCTCTTTGGTTCCGA
TGATGAAGATGATGAAGAATACGAAAGACAATTAGAAGAAAGACGTAAGAAAGCTATGGA
ACACAAAAAACCAAAGGAAACCGTCATTGCTAAATCTTCAATTCTCTTGGATGTTAAGCC
ATGGGATGATGAAACCGATATGGTCGAATTAGAAAAATGCGTTCGTTCAATTGAAATGGA
CGGTTTAGTCTGGGGTGCCTCAAAACTCGTTGCCGTTGGTTATGGTATCAAAAAGTTAGT
CATCAATTTAGTCGTCGAAGATCTTAAAGTTTCAACCGATGAATTAGAAGAAAAAATTAA
AGATTTCGAAGATTACGTCCAATCCGTTGATGTTGCTGCTTTCAATAAAATCTAAATTGT
TTGTTTTTTTTTAAAAAGACAACAAAAATTATATTATAATAACCTTTTTTTCCAATAAAT
ATGTTGTTTTGTAAAGAAATTAAA
sequence update 1997. 2.26
Translated Amino Acid sequence
KMPSFADLTTENGLVELNKFVSDKTYIVGFVPSSADVQAFNLVKTAPCATKYPHAARWFN
TIASYSAAEQGQFEKVTETVTIAAPAAPKADDDVDLFGSDDEDDEEYERQLEERRKKAME
HKKPKETVIAKSSILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLV
INLVVEDLKVSTDELEEKIKDFEDYVQSVDVAAFNKI*ivcfflkrqqklyynnlffq*i
ccfvkkl


Translated Amino Acid sequence (All Frames)
Frame A:
enafir*fny*krscrikqicq*qnlhcwfcsikc*cpslqls*nrtmch*iptccqmvq
yhcliqccrtrsirksyrnrhycrpsctks***r*slwfr**r**rirktirrkt*esyg
tqktkgnrhc*ifnslgc*amg**nrygrirkmrsfn*ngrfslgclktrcrwlwyqkvs
hqfsrrrs*sfnr*irrkn*rfrrlrpir*cccfq*nlnclfffkkttkiil**pffpin
mlfckeik


Frame B:
KMPSFADLTTENGLVELNKFVSDKTYIVGFVPSSADVQAFNLVKTAPCATKYPHAARWFN
TIASYSAAEQGQFEKVTETVTIAAPAAPKADDDVDLFGSDDEDDEEYERQLEERRKKAME
HKKPKETVIAKSSILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLV
INLVVEDLKVSTDELEEKIKDFEDYVQSVDVAAFNKI*ivcfflkrqqklyynnlffq*i
ccfvkkl


Frame C:
kclhsli*llktvlsn*tnlsvtkltllvlfhqvlmskpst*lkphhvplnthmlpdgsi
plphtvlpnkvnskklpkpsllppqlhqklmmtlislvpmmkmmkntkdn*kkdvrklwn
tknqrkpsllnlqfswmlshgmmkpiwsn*knafvqlkwtv*sgvpqnslplvmvsks*s
si*sskilkfqpmn*kkklkiskitsnplmlllsiksklfvff*kdnknyiiitffsnky
vvl*rn*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AL21 (FC-AL21Q) /CSM/FC/FC-AL/FC-AL21Q.Seq.d/ 1380 0.0
FC-216 (FC-216Q) /CSM/CG/CG-FC/FC-216Q.Seq.d/ 1380 0.0
SFD876 (SFD876Q) /CSM/SF/SFD8-D/SFD876Q.Seq.d/ 1348 0.0
VSH378 (VSH378Q) /CSM/VS/VSH3-D/VSH378Q.Seq.d/ 1249 0.0
FC-AU19 (FC-AU19Q) /CSM/FC/FC-AU/FC-AU19Q.Seq.d/ 1116 0.0
VSE157 (VSE157Q) /CSM/VS/VSE1-C/VSE157Q.Seq.d/ 1082 0.0
FC-AW11 (FC-AW11Q) /CSM/FC/FC-AW/FC-AW11Q.Seq.d/ 1053 0.0
VFN577 (VFN577Q) /CSM/VF/VFN5-D/VFN577Q.Seq.d/ 961 0.0
VHC364 (VHC364Q) /CSM/VH/VHC3-C/VHC364Q.Seq.d/ 46 8e-04
SLA125 (SLA125Q) /CSM/SL/SLA1-B/SLA125Q.Seq.d/ 46 8e-04

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U15926|U15926.1 Dictyostelium discoideum elongation factor 1 beta (eEF1beta) mRNA, complete cds. 1314 0.0 2
AB007025|AB007025.1 Dictyostelium discoideum DdEF1b mRNA for elongation factor 1b, complete cds. 658 0.0 4
AW199133|AW199133.1 da12a10.x1 Xenopus laevis oocyte Xenopus laevis cDNA clone XENOPUS_SOURCE_ID:xlnoc003m19 3' similar to gb:X60489 ELONGATION FACTOR 1-BETA (HUMAN);, mRNA sequence. 52 2e-20 4
AW764698|AW764698.1 da91a02.x1 Xenopus laevis tadpole stage 24 Xenopus laevis cDNA clone IMAGE: 3' similar to gb:X60489 ELONGATION FACTOR 1-BETA (HUMAN);, mRNA sequence. 52 3e-20 4
BQ400397|BQ400397.1 NISC_mp09a10.x1 NICHD XGC Sp1 Xenopus laevis cDNA clone IMAGE:4968858 3', mRNA sequence. 52 4e-20 4
BJ636323|BJ636323.1 Xenopus laevis cDNA clone:XL190c05, 3' end. 52 5e-20 4
BG554212|BG554212.1 de96d08.x3 Wellcome CRC pRN3 St19 26 Xenopus laevis cDNA clone IMAGE:3549375 3' similar to SW:EF1B_XENLA P30151 ELONGATION FACTOR 1-BETA ;, mRNA sequence. 52 5e-20 4
BQ399560|BQ399560.1 NISC_mp04c04.x1 NICHD XGC Sp1 Xenopus laevis cDNA clone IMAGE:4965511 3', mRNA sequence. 52 5e-20 4
BG554583|BG554583.1 de96d08.x2 Wellcome CRC pRN3 St19 26 Xenopus laevis cDNA clone IMAGE:3549375 3' similar to SW:EF1B_XENLA P30151 ELONGATION FACTOR 1-BETA ;, mRNA sequence. 52 6e-20 4
BQ400538|BQ400538.1 NISC_mp09h05.x1 NICHD XGC Sp1 Xenopus laevis cDNA clone IMAGE:4969184 3', mRNA sequence. 52 6e-20 4
dna update 2003.12.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9GRF8) RecName: Full=Elongation factor 1-beta; AltName: Full=D... 359 6e-98
AB007025_1(AB007025|pid:none) Dictyostelium discoideum DdEF1b mR... 321 1e-86
EF633904_1(EF633904|pid:none) Ornithodoros parkeri clone OP-323 ... 200 4e-50
EF677605_1(EF677605|pid:none) Picea sitchensis clone WS02771_J13... 197 2e-49
EZ000417_1(EZ000417|pid:none) TSA: Culex tarsalis Ctar-253 elong... 196 6e-49
DQ673433_1(DQ673433|pid:none) Diaphorina citri putative elongati... 196 8e-49
AB180443_1(AB180443|pid:none) Plutella xylostella eEF-1 beta' mR... 196 8e-49
EU258621_1(EU258621|pid:none) Spodoptera exigua elongation facto... 194 3e-48
(P29522) RecName: Full=Elongation factor 1-beta'; &D13339_1(D13... 194 3e-48
BC106340_1(BC106340|pid:none) Xenopus laevis elogation factor 1 ... 192 7e-48
protein update 2009. 7. 2
PSORT

psg: 0.75 gvh: 0.60 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.07 erl: 0.00 erm: 0.20 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for FC-AL21 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AL21E
Full length Seq.
>FC-AL21E.Seq
GAAAATGCCTTCATTCGCTGATTTAACTACTGAAAACGGTCTTGTCGAATTAAACAAATT
TGTCAGTGACAAAACTTACATTGTTGGTTTTGTTCCATCAAGTGCTGATGTCCAAGCCTT
CAACTTAGTTAAAACCGCACCATGTGCCACTAAATACCCACATGCTGCCAGATGGTTCAA
TACCATTGCCTCATACAGTGCTGCCGAACAAGGTCAATTCGAAAAAGTTACCGAAACCGT
CACTATTGCCGCCCCAGCTGCACCAAAAGCTGATGATGACGTTGATCTCTTTGGTTCCGA
TGATGAAGATGATGAAGAATACGAAAGACAATTAGAAGAAAGACGTAAGAAAGCTATGGA
ACACAAAAAACCAAAGGAAACCGTCATTGCTAAATCTTCAATTCTCTTGGATGTTAAGCC
ATGGGATGATGAAACCGATATGGTCGAATTAGAAAAATGCGTTCGTTCAATTGAAATGGA
CGGTTTAGTCTGGGGTGCCTCAAAACTCGTTGCCGTTGGTTATGGTATCAAAAAGTTAGT
CATCAATTTAGTCGTCGAAGATCTTAAAGTTTCAACCGATGAATTAGAAGAAAAAATTAA
AGATTTCGAAGATTACGTCCAATCCGTTGATGTTGCTGCTTTCAATAAAATCTAAATTGT
TTGTTTTTTTTTAAAAAGACAACAAAAATTATATTATAATAACCTTTTTTTCCAATAAAT
ATGTTGTTTTGTAAAGAAATTAAA
Length of full length seq. 744