>FC-AL16 (FC-AL16Q) /CSM/FC/FC-AL/FC-AL16Q.Seq.d/
GTTTTTGACAATCCTTATAAATCTAAAACAACAAAATGGTCTCTCTTAAATTACAAAAGA
GATTAGCTGCCTCTATTCTCAAATGCGGCAAAGGTAGAGTTTGGATCGATCCAAATGAAA
TTGCTGATGTTGCCATGGCCAACTCAAGAGATAACGTCCGTAGACTCATCGCTACCGGTT
TCATCATGCGTAAACCAGTTGTTGTCCACTCTCGTTCACGTGCTAGAGAACACAACGCTG
CCAAACGTTTAGGTCGTCACAGAGGTGCTGGTAACAGATTAGGTACCCGTGAAGCTCGTC
TCCCATCCAAGATTCTTTGGATCCGTAGAATCAGAGTTTTAAGAAGACTCTTAAAGAAAT
ACCGTGAAGCCAAGAAAATCGATAAACACTCTTACAGAGAGTTATACCTCAAAGCCAAAG
GTAATGTCTTCAAGAACAAACGTACCTTAATTGAATACATCGTCAAATCTAAGACTGAAA
AATTAAGAGAAAAACTCATCCAAGATCAAGCTCAAGCCCGTAGAAACAAGAACAAATCAA
TCAAAGACAGACGTGCTGCTAAATCTGCCGCCAAAGAAATTGTTTCATCAAACTAAAATA
AATAATACAATCTTTTTTAATATTTTAAAAAAAAAAAAAAAAAAAAAA

f*qsl*i*NNKMVSLKLQKRLAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGF
IMRKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKY
REAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQAQARRNKNKSI
KDRRAAKSAAKEIVSSN*nk*ynlf*yfkkkkkkk

Frame A:
vfdnpykskttkwsllnykrd*lplfsnaakvefgsiqmkllmlpwptqeitsvdsslpv
sscvnqllstlvhvlenttlpnv*vvtevlvtd*vpvklvshprffgsvesef*eds*rn
tvkprksintltesytskpkvmssrtnvp*lntssnlrlkn*eknsskiklkpvetrtnq
sktdvllnlppkklfhqtkinntiffnilkkkkkkk


Frame B:
fltilinlkqqngls*itkeisclysqmrqr*sldrsk*nc*cchgqlkr*rp*thryrf
hha*tsccplsftc*rtqrcqtfrssqrcw*qiryp*ssspiqdsldp*nqsfkktlkei
p*sqenr*tllqrvipqsqr*clqeqtyln*ihrqi*d*kikrkthprssssp*kqeqin
qrqtcc*icrqrncfiklk*iiqsflif*kkkkkk


Frame C:
f*qsl*i*NNKMVSLKLQKRLAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGF
IMRKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKY
REAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQAQARRNKNKSI
KDRRAAKSAAKEIVSSN*nk*ynlf*yfkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AL16 (FC-AL16Q) /CSM/FC/FC-AL/FC-AL16Q.Seq.d/                     1241   0.0
VSI313 (VSI313Q) /CSM/VS/VSI3-A/VSI313Q.Seq.d/                       1213   0.0
VSH410 (VSH410Q) /CSM/VS/VSH4-A/VSH410Q.Seq.d/                       1207   0.0
VSJ481 (VSJ481Q) /CSM/VS/VSJ4-D/VSJ481Q.Seq.d/                       1199   0.0
VSI231 (VSI231Q) /CSM/VS/VSI2-B/VSI231Q.Seq.d/                       1195   0.0
VFM394 (VFM394Q) /CSM/VF/VFM3-D/VFM394Q.Seq.d/                       1187   0.0
VSI501 (VSI501Q) /CSM/VS/VSI5-A/VSI501Q.Seq.d/                       1185   0.0
VSK337 (VSK337Q) /CSM/VS/VSK3-B/VSK337Q.Seq.d/                       1181   0.0
VSB326 (VSB326Q) /CSM/VS/VSB3-B/VSB326Q.Seq.d/                       1176   0.0
VFM446 (VFM446Q) /CSM/VF/VFM4-B/VFM446Q.Seq.d/                       1172   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L27657|L27657.1 Dictyostelium discoideum ribosomal protein (rpl19) mRNA, complete cds.  1160   0.0    1
X15383|X15383.1 Dictyostelium discoideum vegetative specific V14 gene.   950   0.0    3
AY160105|AY160105.1 Dictyostelium discoideum nucleotide exchange factor RasGEF P (gefP) gene, complete cds.   220   2e-53  1
CD450796|CD450796.1 USDA-FP_102775 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-38_C01 5', mRNA sequence.    44   9e-08  3
CB909744|CB909744.1 USDA-FP_101487 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-21_D06 5', mRNA sequence.    44   1e-07  3
CD450513|CD450513.1 USDA-FP_102476 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-34_C02 5', mRNA sequence.    44   1e-07  3
BQ914431|BQ914431.1 QHB10I15.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB10I15, mRNA sequence.    50   2e-07  3
BU024757|BU024757.1 QHF5P11.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHF5P11, mRNA sequence.    50   7e-07  2
CD451515|CD451515.1 USDA-FP_103756 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-47_E09 5', mRNA sequence.    44   7e-07  2
AJ516647|AJ516647.1 Mytilus galloprovincialis EST, clone GPPD00660.    36   2e-05  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF084901_1(EF084901|pid:none) Picea sitchensis clone WS0287_J15 ...   208   1e-52
BT071763_1(BT071763|pid:none) Picea sitchensis clone WS0453_A01 ...   208   1e-52
EF145429_1(EF145429|pid:none) Populus trichocarpa clone WS01124_...   208   1e-52
BT051421_1(BT051421|pid:none) Medicago truncatula clone MTYF1_F2...   208   1e-52
AC152751_25(AC152751|pid:none) Medicago truncatula clone mth2-18...   207   2e-52
FJ362591_1(FJ362591|pid:none) Vernicia fordii 60s ribosome prote...   207   3e-52
BC126715_1(BC126715|pid:none) Bos taurus cDNA clone MGC:155204 I...   207   3e-52
(P49693) RecName: Full=60S ribosomal protein L19-3;  &AF386993_1...   206   5e-52
(Q9LUQ6) RecName: Full=60S ribosomal protein L19-2;  &AB022217_2...   206   6e-52
(Q9SRX2) RecName: Full=60S ribosomal protein L19-1; AltName: Ful...   206   6e-52

 psg: 0.67  gvh: 0.32  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.05
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for FC-AL16 is cyt

>FC-AL16E.Seq
GTTTTTGACAATCCTTATAAATCTAAAACAACAAAATGGTCTCTCTTAAATTACAAAAGA
GATTAGCTGCCTCTATTCTCAAATGCGGCAAAGGTAGAGTTTGGATCGATCCAAATGAAA
TTGCTGATGTTGCCATGGCCAACTCAAGAGATAACGTCCGTAGACTCATCGCTACCGGTT
TCATCATGCGTAAACCAGTTGTTGTCCACTCTCGTTCACGTGCTAGAGAACACAACGCTG
CCAAACGTTTAGGTCGTCACAGAGGTGCTGGTAACAGATTAGGTACCCGTGAAGCTCGTC
TCCCATCCAAGATTCTTTGGATCCGTAGAATCAGAGTTTTAAGAAGACTCTTAAAGAAAT
ACCGTGAAGCCAAGAAAATCGATAAACACTCTTACAGAGAGTTATACCTCAAAGCCAAAG
GTAATGTCTTCAAGAACAAACGTACCTTAATTGAATACATCGTCAAATCTAAGACTGAAA
AATTAAGAGAAAAACTCATCCAAGATCAAGCTCAAGCCCGTAGAAACAAGAACAAATCAA
TCAAAGACAGACGTGCTGCTAAATCTGCCGCCAAAGAAATTGTTTCATCAAACTAAAATA
AATAATACAATCTTTTTTAATATTTTAAAAAAAAAAAAAAAAAAAAAA