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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AL12
Library FC
(Link to library)
Clone ID FC-AL12
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15678-1
Original site URL
Representative seq. ID FC-AL12P
(Link to Original site)
Representative DNA sequence 
>FC-AL12 (FC-AL12Q) /CSM/FC/FC-AL/FC-AL12Q.Seq.d/
GTTATTCAATCCAATATATTTACATATTTTTTATATATATATTTTTTTTTTTTCCCAAAT
TATATATTTTTTAAAAAATCATATTAACATCCATCCACACAAAAAAAAAAAAAAAAAAGA
AAAAAAAAAATATAATTTCACAACACACAGTCTTTTGTATTTCTATTTAAAGTTCACCCT
AAAATTATTTTTTTTATAAAAAAAAAATAAAATAAATTGTATTTGTATTTGTATTAATAA
TAGTCATTTTTTTTTTCCCTTTATTAAATAAATAAAAAAAAAAAAGTTTTTTTTTTTTTT
TAATAATATATXXXXXXXXXXCCTTTTAGGTTCAATTGAAAATTTCTCAAAGGGTGGACT
TAAAAAGACAGTTACAGTTGATAAAAGCGCTGGTGTACCAACAAAAACCACACCATCTGC
AAATTCAGCTGCCAGCAATGCTGGATCAGAGCCATCNTCAGGCGGTTCAACACCAGCACC
AGCTCCAAAATCTAGCGGTGGTGGTGGCGGTGGTGATTTAATGGCCGAAGTTATGGCCAA
GAGAGCCAAAATGAAGGCAGCAGCATCTCAACCAAAAGAAGAATCATCAGCACCAACTCC
AGCACCAACTCCAGCACCAACTCCAGCACCAACCCCATCATCAACATCTTTCAAACCACC
ACAATCATTCAGTAAACCAGCAACTAAAACAGCTGCTGCAAACAAACCACCTTCACCATC
CTTATCAGCTCCACTCCCATCAACTGTAGCCAATGAAGATTTACAATCACTCAAAGAAGA
AATTTTNACTGAAGTTAGAAAGGAAATTCAAAAAGCTAAAGATGAAATTTTAGAAGCAAT
CAGAGCATCTCAACATTAAATTAATACTTTAATGGGCGAATGAGTTAAATGATTTCTTTC
AAAAAAAAAA
sequence update 1997. 2.26
Translated Amino Acid sequence 
lfnpiylhifyiyifffsqiiyflknhinihphkkkkkkekkkynftthsllyfylkftl
klffl*kknkincicicinnshfffpfik*IKKKKFFFFFNNI---

---LLGSIENFSKGGLKKTVTVDKSAGVPTKTTPSANSAASNAGSEPSSGGSTPAPAPKS
SGGGGGGDLMAEVMAKRAKMKAAASQPKEESSAPTPAPTPAPTPAPTPSSTSFKPPQSFS
KPATKTAAANKPPSPSLSAPLPSTVANEDLQSLKEEIXTEVRKEIQKAKDEILEAIRASQ
H*intlmge*vk*flskkk
Translated Amino Acid sequence (All Frames) 
Frame A:
viqsniftyflyiyffffpnyiffkksy*hpstqkkkkkrkkki*fhntqsfvflfkvhp
kiiffikkk*nklylyly***sfffsly*inkkkkvffff**y---

---pfrfn*kflkgwt*kdsys**krwctnknhtickfscqqcwiraixrrfntstsski
*rwwwrw*fngrsygqesqnegssistkrriistnsstnsstnsstnpiinifqtttiiq
*tsn*nscckqttftilisstpincsq*rftitqrrnfx*s*kgnsks*r*nfrsnqsis
tln*yfngrms*misfkkk

Frame B:
lfnpiylhifyiyifffsqiiyflknhinihphkkkkkkekkkynftthsllyfylkftl
klffl*kknkincicicinnshfffpfik*IKKKKFFFFFNNI---

---LLGSIENFSKGGLKKTVTVDKSAGVPTKTTPSANSAASNAGSEPSSGGSTPAPAPKS
SGGGGGGDLMAEVMAKRAKMKAAASQPKEESSAPTPAPTPAPTPAPTPSSTSFKPPQSFS
KPATKTAAANKPPSPSLSAPLPSTVANEDLQSLKEEIXTEVRKEIQKAKDEILEAIRASQ
H*intlmge*vk*flskkk

Frame C:
ysiqyiyiffiyiffffpklyif*kiiltsihtkkkkkkkkkniisqhtvfcisi*ssp*
nyffykkkik*ivfvfvliivifffpllnk*kkksffffliiy---

---f*vqlkisqrvdlkrqlqlikalvyqqkphhlqiqlpamldqshxqavqhqhqlqnl
avvvavvi*wpklwprepk*rqqhlnqkknhqhqlqhqlqhqlqhqphhqhlsnhhnhsv
nqqlkqllqtnhlhhpyqlhshql*pmkiynhskkkfxlklerkfkklkmkf*kqsehln
iklil*wanelndffqkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AL12 (FC-AL12Q) /CSM/FC/FC-AL/FC-AL12Q.Seq.d/                     1136   0.0
FC-209 (FC-209Q) /CSM/CG/CG-FC/FC-209Q.Seq.d/                        1136   0.0
FC-AZ18 (FC-AZ18Q) /CSM/FC/FC-AZ/FC-AZ18Q.Seq.d/                     1134   0.0
SLH329 (SLH329Q) /CSM/SL/SLH3-B/SLH329Q.Seq.d/                       1128   0.0
SLC230 (SLC230Q) /CSM/SL/SLC2-B/SLC230Q.Seq.d/                       1128   0.0
SSH374 (SSH374Q) /CSM/SS/SSH3-D/SSH374Q.Seq.d/                       1098   0.0
AFO838 (AFO838Q) /CSM/AF/AFO8-B/AFO838Q.Seq.d/                       1072   0.0
AFK259 (AFK259Q) /CSM/AF/AFK2-C/AFK259Q.Seq.d/                       1068   0.0
FC-BD13 (FC-BD13Q) /CSM/FC/FC-BD/FC-BD13Q.Seq.d/                     1066   0.0
AFG225 (AFG225Q) /CSM/AF/AFG2-B/AFG225Q.Seq.d/                       1063   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete sequence.    48  8e-10  6
AL205967|AL205967.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 152K16 of library G from Tetraodon nigroviridis.    56  3e-08  3
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    44  4e-07  5
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           46  6e-06  5
AX344561|AX344561.1 Sequence 12 from Patent WO0200932.            42  3e-05  5
AL034559|AL034559.4 Plasmodium falciparum MAL3P7.                 42  3e-05  7
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    48  3e-05  6
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    46  3e-05  5
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.    42  4e-05  9
BZ052446|BZ052446.1 jnr67a06.b1 B.oleracea001 Brassica oleracea genomic, DNA sequence.    38  4e-05  3
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY007501_1(AY007501|pid:none) Hirudo medicinalis enabled-like pr...    40   0.10
X98534_1(X98534|pid:none) H.sapiens VASP gene, exons 4 to 13 and...    38   0.39
(P50552) RecName: Full=Vasodilator-stimulated phosphoprotein;   ...    38   0.39
BC026019_1(BC026019|pid:none) Homo sapiens vasodilator-stimulate...    38   0.39
(P50551) RecName: Full=Vasodilator-stimulated phosphoprotein;   ...    38   0.39
A84509_1(A84509|pid:none) Sequence 124 from Patent WO9845704.  &...    38   0.39
(Q2TA49) RecName: Full=Vasodilator-stimulated phosphoprotein;   ...    38   0.39
(Q5R896) RecName: Full=Ena/VASP-like protein; AltName: Full=Ena/...    37   0.87
(P70460) RecName: Full=Vasodilator-stimulated phosphoprotein;   ...    37   1.1
X98475_1(X98475|pid:none) M.musculus VASP gene.                        37   1.1
protein update 2009. 4.13
PSORT 

 psg: 0.88  gvh: 0.40  alm: 0.44  top: 0.27  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for FC-AL12 is cyt
5' end seq. ID FC-AL12F
5' end seq. 
>FC-AL12F.Seq
GTTATTCAATCCAATATATTTACATATTTTTTATATATATATTTTTTTTTTTTCCCAAAT
TATATATTTTTTAAAAAATCATATTAACATCCATCCACACAAAAAAAAAAAAAAAAAAGA
AAAAAAAAAATATAATTTCACAACACACAGTCTTTTGTATTTCTATTTAAAGTTCACCCT
AAAATTATTTTTTTTATAAAAAAAAAATAAAATAAATTGTATTTGTATTTGTATTAATAA
TAGTCATTTTTTTTTTCCCTTTATTAAATAAATAAAAAAAAAAAAGTTTTTTTTTTTTTT
TAATAATATAT----------
Length of 5' end seq. 311
3' end seq. ID FC-AL12Z
3' end seq. 
>FC-AL12Z.Seq
----------CCTTTTAGGTTCAATTGAAAATTTCTCAAAGGGTGGACTTAAAAAGACAG
TTACAGTTGATAAAAGCGCTGGTGTACCAACAAAAACCACACCATCTGCAAATTCAGCTG
CCAGCAATGCTGGATCAGAGCCATCNTCAGGCGGTTCAACACCAGCACCAGCTCCAAAAT
CTAGCGGTGGTGGTGGCGGTGGTGATTTAATGGCCGAAGTTATGGCCAAGAGAGCCAAAA
TGAAGGCAGCAGCATCTCAACCAAAAGAAGAATCATCAGCACCAACTCCAGCACCAACTC
CAGCACCAACTCCAGCACCAACCCCATCATCAACATCTTTCAAACCACCACAATCATTCA
GTAAACCAGCAACTAAAACAGCTGCTGCAAACAAACCACCTTCACCATCCTTATCAGCTC
CACTCCCATCAACTGTAGCCAATGAAGATTTACAATCACTCAAAGAAGAAATTTTNACTG
AAGTTAGAAAGGAAATTCAAAAAGCTAAAGATGAAATTTTAGAAGCAATCAGAGCATCTC
AACATTAAATTAATACTTTAATGGGCGAATGAGTTAAATGATTTCTTTCAAAAAAAAAA
Length of 3' end seq. 589
Connected seq. ID FC-AL12P
Connected seq. 
>FC-AL12P.Seq
GTTATTCAATCCAATATATTTACATATTTTTTATATATATATTTTTTTTTTTTCCCAAAT
TATATATTTTTTAAAAAATCATATTAACATCCATCCACACAAAAAAAAAAAAAAAAAAGA
AAAAAAAAAATATAATTTCACAACACACAGTCTTTTGTATTTCTATTTAAAGTTCACCCT
AAAATTATTTTTTTTATAAAAAAAAAATAAAATAAATTGTATTTGTATTTGTATTAATAA
TAGTCATTTTTTTTTTCCCTTTATTAAATAAATAAAAAAAAAAAAGTTTTTTTTTTTTTT
TAATAATATAT----------CCTTTTAGGTTCAATTGAAAATTTCTCAAAGGGTGGACT
TAAAAAGACAGTTACAGTTGATAAAAGCGCTGGTGTACCAACAAAAACCACACCATCTGC
AAATTCAGCTGCCAGCAATGCTGGATCAGAGCCATCNTCAGGCGGTTCAACACCAGCACC
AGCTCCAAAATCTAGCGGTGGTGGTGGCGGTGGTGATTTAATGGCCGAAGTTATGGCCAA
GAGAGCCAAAATGAAGGCAGCAGCATCTCAACCAAAAGAAGAATCATCAGCACCAACTCC
AGCACCAACTCCAGCACCAACTCCAGCACCAACCCCATCATCAACATCTTTCAAACCACC
ACAATCATTCAGTAAACCAGCAACTAAAACAGCTGCTGCAAACAAACCACCTTCACCATC
CTTATCAGCTCCACTCCCATCAACTGTAGCCAATGAAGATTTACAATCACTCAAAGAAGA
AATTTTNACTGAAGTTAGAAAGGAAATTCAAAAAGCTAAAGATGAAATTTTAGAAGCAAT
CAGAGCATCTCAACATTAAATTAATACTTTAATGGGCGAATGAGTTAAATGATTTCTTTC
AAAAAAAAAA
Length of connected seq. 900
Full length Seq ID -
Full length Seq. -
Length of full length seq. -