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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AL11
Library FC
(Link to library)
Clone ID FC-AL11
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16178-1
Original site URL
Representative seq. ID FC-AL11E
(Link to Original site)
Representative DNA sequence 
>FC-AL11 (FC-AL11Q) /CSM/FC/FC-AL/FC-AL11Q.Seq.d/
GTTTTTTTTTTACTTAATCAATAAAAAATTAAAACAAATCAATTATAGTGTAAACCCTTG
TAAAAATTAAATAAAAAACATTGTATTATATTCCACCTCATATTTTTTTTTTCCATATTA
AAATCACCTTTTTTATATATAATATTTTAAAAAAAAAATAAAAAAAATAATTAAAAATGT
CAGCTTTCGAAATTGAACATTTAGCAAGTTGCATTACTGCTCACGCATGGAATGCTGATA
GATCAAGAGTCGCTTTATGCCCAAATAATAATGAAGTACACATTTATGCCAAACAAGGAA
CCTCATGGGTTGTTGAACATGTTTTAGCTGAACATGATCAACTTGTTACATCAATTGATT
GGGCACCAAAAACTAATCGTATTTTAACATCATCACAAGATCGTAATGCATACGTTTGGA
CATTTAAAGATGGTCAATGGAAACCAGTATTAGTATTACTTCGTATTAATAGAGCAGCCA
CTCATGTTAAATGGTCACCACAAGAAAACAAATTTGCTGTTGCAACTGGTGCCAAATTGG
TATGTATTTGTTTCTTTGAAGAGGAACATGATTGGTGGGCATCAAATCATATCAAGAAGC
ATAAATCAACCGTATTAAAGGTTGACTGGCATCCAAACAATTTATTATTGGCAACCTCAT
CCTCTGACTACAAGGTTAGAGTATTCGACGCCTACATAAAGAAAGCCGATGGTCGTAGTG
TCACTCGTCCATACGGTGAAGTCGCTTTTGGTGAACCAGTCTTTGAATTTGACCAATGCG
CCTCATGGGTCCATGCCCTCAAATGGTCCCCATCCGGTAGTACCTTGGCTTACTCCTCAC
ACGATGGTGTCTTTGCCGTTGCAAACTTTTCAACCAATCCACCAACCATCGAAAAACTCA
GAGTTCGTAATTTACCATTACGTGATCTCCTTTACATCACTGAAAACTCTATCGCCGGTG
TTGGTTACGATTGTGCTCCACTTTTAATCACTAATCAAAACGGTTGGAAATATTCTGGTG
AAATGGATAAGGCCTCTGAAGGTGGTGCTGCCGCTGGCTCTGAAACCTCTGCTCGTAAAC
TCTTCCAAAATAAAGTAGACCTTGGTGAATCAAAATCTGCCGATAAAAAGTTAACAACCG
TTCATCAAAATTGTATTACTTCAATCGTTCCATTCAAGAGTGTAGGTGGTGTCGTCTCTG
ATTTCAGTACCTCTGGTTTAGATGGTAACATTGTCGTATGGCATGTAAAAGCTCTTGAAG
CTAAAAATAAATTCAAAGTCATTTAAATGAGATAAAAAAATAAAAATTTTAAATTATAAA
AAAAAAAAAAAAAAAAAAAAAAACATATATAAAACTCATTCAACTACCTTCAATTATTTC
CAAGAGTTAAATTTTATATATTGAAAAAAAAGAGATTATAGTAAAAAAATAAAAATTATA
AAAAAAGTATTTATTAAAAAAA
sequence update 1998.10. 1
Translated Amino Acid sequence 
ffft*sikn*nksiiv*tlvkik*ktlyyipphifffhikitffiynilkkk*kk*LKMS
AFEIEHLASCITAHAWNADRSRVALCPNNNEVHIYAKQGTSWVVEHVLAEHDQLVTSIDW
APKTNRILTSSQDRNAYVWTFKDGQWKPVLVLLRINRAATHVKWSPQENKFAVATGAKLV
CICFFEEEHDWWASNHIKKHKSTVLKVDWHPNNLLLATSSSDYKVRVFDAYIKKADGRSV
TRPYGEVAFGEPVFEFDQCASWVHALKWSPSGSTLAYSSHDGVFAVANFSTNPPTIEKLR
VRNLPLRDLLYITENSIAGVGYDCAPLLITNQNGWKYSGEMDKASEGGAAAGSETSARKL
FQNKVDLGESKSADKKLTTVHQNCITSIVPFKSVGGVVSDFSTSGLDGNIVVWHVKALEA
KNKFKVI*mr*knknfkl*kkkkkkkkhi*nsfnylqlfprvkfyilkkkrl**knknyk
ksiy*k
Translated Amino Acid sequence (All Frames) 
Frame A:
vffllnq*kiktnql*ckpl*klnkkhciifhlifffsilkspflyiif*kknkknn*kc
qlsklni*qvalllthgmlidqeslyaqiimkytfmpnkephgllnmf*lnminllhqli
ghqklivf*hhhkivmhtfghlkmvngnqy*yyfvlieqplmlnghhkktnlllqlvpnw
yvfvslkrnmigghqiisrsinqpy*rltgiqtiyywqphplttrleystpt*rkpmvvv
slvhtvksllvnqslnltnaphgsmpsngphpvvpwltphtmvslplqtfqpihqpskns
efviyhyvisftslktlspvlvtivlhf*sliktvgnilvkwirplkvvlplalkpllvn
sskik*tlvnqnlpiks*qpfikivllqsfhsrv*vvsslisvplv*mvtlsygm*kllk
lkinsksfk*dkkikilnykkkkkkkkniykthsttfnyfqelnfiy*kkrdyskkikii
kkvfikk


Frame B:
fffylinkklkqinysvnpckn*iknivlystsyfffpy*nhlfyi*yfkkkikkiiknv
sfrn*tfsklhycsrmec**iksrfmpk***sthlcqtrnlmgc*tcfs*t*stcyin*l
gtkn*syfniitrs*cirldi*rwsmetsisitsy**sshsc*mvttrkqicccnwcqig
mylfl*rgt*lvgiksyqea*inrikg*laskqfiignlil*lqg*sirrlhkesrws*c
hssir*srfw*tsl*i*pmrlmgpcpqmvpir*ylgllltrwclcrcklfnqstnhrktq
ss*ftit*splhh*klyrrcwlrlcstfnh*skrleifw*ng*gl*rwccrwl*nlcs*t
lpk*srpw*ikicr*kvnnrssklyyfnrsiqecrwcrl*fqylwfrw*hcrmackss*s
*k*iqshlneikk*kf*iikkkkkkkktyikliqlpsiisks*ilyiekkeiivkk*kl*
kkyllkk


Frame C:
ffft*sikn*nksiiv*tlvkik*ktlyyipphifffhikitffiynilkkk*kk*LKMS
AFEIEHLASCITAHAWNADRSRVALCPNNNEVHIYAKQGTSWVVEHVLAEHDQLVTSIDW
APKTNRILTSSQDRNAYVWTFKDGQWKPVLVLLRINRAATHVKWSPQENKFAVATGAKLV
CICFFEEEHDWWASNHIKKHKSTVLKVDWHPNNLLLATSSSDYKVRVFDAYIKKADGRSV
TRPYGEVAFGEPVFEFDQCASWVHALKWSPSGSTLAYSSHDGVFAVANFSTNPPTIEKLR
VRNLPLRDLLYITENSIAGVGYDCAPLLITNQNGWKYSGEMDKASEGGAAAGSETSARKL
FQNKVDLGESKSADKKLTTVHQNCITSIVPFKSVGGVVSDFSTSGLDGNIVVWHVKALEA
KNKFKVI*mr*knknfkl*kkkkkkkkhi*nsfnylqlfprvkfyilkkkrl**knknyk
ksiy*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AL11 (FC-AL11Q) /CSM/FC/FC-AL/FC-AL11Q.Seq.d/                     2169   0.0
FC-208 (FC-208Q) /CSM/CG/CG-FC/FC-208Q.Seq.d/                        2169   0.0
AFD360 (AFD360Q) /CSM/AF/AFD3-C/AFD360Q.Seq.d/                       1455   0.0
VFH613 (VFH613Q) /CSM/VF/VFH6-A/VFH613Q.Seq.d/                       1405   0.0
AFJ120 (AFJ120Q) /CSM/AF/AFJ1-A/AFJ120Q.Seq.d/                       1362   0.0
VFI561 (VFI561Q) /CSM/VF/VFI5-C/VFI561Q.Seq.d/                       1356   0.0
SFI444 (SFI444Q) /CSM/SF/SFI4-B/SFI444Q.Seq.d/                       1324   0.0
CFC556 (CFC556Q) /CSM/CF/CFC5-C/CFC556Q.Seq.d/                       1285   0.0
AFM674 (AFM674Q) /CSM/AF/AFM6-D/AFM674Q.Seq.d/                       1273   0.0
VFE696 (VFE696Q) /CSM/VF/VFE6-D/VFE696Q.Seq.d/                       1257   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF095930|AF095930.1 Dictyostelium discoideum p41-Arc (arpD) mRNA, complete cds.  2169   0.0    3
CB930193|CB930193.1 ri92a06.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodi cDNA 5' similar to TR:Q9U1R7 Q9U1R7 Y79H2A.6 PROTEIN. [1] ;, mRNA sequence.    54   0.006  1
AC124921|AC124921.3 Rattus norvegicus clone CH230-214L24, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    50   0.087  1
AC094767|AC094767.3 Rattus norvegicus clone CH230-5L7, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.    50   0.087  1
AI087480|AI087480.1 SWAMCAC16H08SK Brugia malayi adult male cDNA (SAW94NL-BmAM) Brugia malayi cDNA clone SWAMCAC16H08 5', mRNA sequence.    38   1.0    2
AI784710|AI784710.1 SWAMCAC30C09SK Brugia malayi adult male cDNA (SAW94NL-BmAM) Brugia malayi cDNA clone SWAMCAC30C09 5', mRNA sequence.    38   1.1    2
AW179914|AW179914.1 SWYD25CAU05D03SK Brugia malayi young adult day 25 cDNA (SAW99MLW-BmYD25) Brugia malayi cDNA clone SWYD25CAU05D03 5', mRNA sequence.    38   1.3    2
BE132434|BE132434.1 SWYACAL09G02SK Brugia malayi young adult cDNA (SAW99MLW-BmYA) Brugia malayi cDNA clone SWYACAL09G02 5', mRNA sequence.    38   1.3    2
AC124472|AC124472.4 Mus musculus BAC clone RP24-83E15 from chromosome 7, complete sequence.    46   1.4    1
BX649612|BX649612.5 Zebrafish DNA sequence from clone CH211-220L16 in linkage group 18.    46   1.4    1
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ720885_1(AJ720885|pid:none) Gallus gallus mRNA for hypothetica...   328   3e-88
EU868834_1(EU868834|pid:none) Sus scrofa actin related protein 2...   322   2e-86
AB170082_1(AB170082|pid:none) Macaca fascicularis brain cDNA clo...   321   4e-86
EU961854_1(EU961854|pid:none) Zea mays clone 238674 actin-relate...   321   4e-86
(Q92747) RecName: Full=Actin-related protein 2/3 complex subunit...   321   4e-86
BC071519_1(BC071519|pid:none) Danio rerio zgc:86896, mRNA (cDNA ...   321   5e-86
BC155744_1(BC155744|pid:none) Danio rerio zgc:86896, mRNA (cDNA ...   321   5e-86
BC073411_1(BC073411|pid:none) Xenopus laevis MGC80877 protein, m...   320   6e-86
(Q1JP79) RecName: Full=Actin-related protein 2/3 complex subunit...   320   8e-86
EU868833_1(EU868833|pid:none) Sus scrofa actin related protein 2...   320   1e-85
protein update 2009. 7. 2
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for FC-AL11 is nuc
5' end seq. ID FC-AL11F
5' end seq. 
>FC-AL11F.Seq
GTTTTTTTTTTACTTAATCAATAAAAAATTAAAACAAATCAATTATAGTGTAAACCCTTG
TAAAAATTAAATAAAAAACATTGTATTATATTCCACCTCATATTTTTTTTTTCCATATTA
AAATCACCTTTTTTATATATAATATTTTAAAAAAAAAATAAAAAAAATAATTAAAAATGT
CAGCTTTCGAAATTGAACATTTAGCAAGTTGCATTACTGCTCACGCATGGAATGCTGATA
GATCAAGAGTCGCTTTATGCCCAAATAATAATGAAGTACACATTTATGCCAAACAAGGAA
CCTCATGGGTTGTTGAACATGTTTTAGCTGAACATGATCAACTTGTTACATCAATTGATT
GGGCACCAAAAACTAATCGTATTTTAACATCATCACAAGATCGTAATGCATACGTTTGGA
CATTTAAAGATGGTCAATGGAAACCAGTATTAGTATTACTTCGTATTAATAGAGCAGCCA
CTCATGTTAAATGGTCACCACAAGAAAACAAATTTGCTGTTGCAACTGGTGCCAAATTGG
TATGTATTTGTTTCTTTGAAGAGGA----------
Length of 5' end seq. 565
3' end seq. ID FC-AL11Z
3' end seq. 
>FC-AL11Z.Seq
----------ACATAAAGAAAGCCGATGGTCGTAGTGTCACTCGTCCATACGGTGAAGTC
GCTTTTGGTGAACCAGTCTTTGAATTTGACCAATGCGCCTCATGGGTCCATGCCCTCAAA
TGGTCCCCATCCGGTAGTACTTTGGCTTACTCCTCACACGATGGTGTCTTTGCCGTTGCA
AACTTTTCAACCAATCCACCAACCATCGAAAAACTCAGAGTTCGTAATTTACCATTACGT
GATCTCCTTTACATCACTGAAAACTCTATCGCCGGTGTTGGTTACGATTGTGCTCCACTT
TTAATCACTAATCAAAACGGTTGGAAATATTCTGGTGAAATGGATAAGGCCTCTGAAGGT
GGTGCTGCCGCTGGCTCTGAAACCTCTGCTCGTAAACTCTTCCAAAATAAAGTAGACCTT
GGTGAATCAAAATCTGCCGATAAAAAGTTAACAACCGTTCATCAAAATTGTATTACTTCA
ATCGTTCCATTCAAGAGTGTAGGTGGTGTCGTCTCTGATTTCAGTACCTCTGGTTTAGAT
GGTAACATTGTCGTATGGCATGTAAAAGCTCTTGAAGCTAAAAATAAATTCAAAGTCATT
TAAATGAGATAAAAAAATAAAAATTTTAAATTATAAAAAAAAA
Length of 3' end seq. 633
Connected seq. ID FC-AL11P
Connected seq. 
>FC-AL11P.Seq
GTTTTTTTTTTACTTAATCAATAAAAAATTAAAACAAATCAATTATAGTGTAAACCCTTG
TAAAAATTAAATAAAAAACATTGTATTATATTCCACCTCATATTTTTTTTTTCCATATTA
AAATCACCTTTTTTATATATAATATTTTAAAAAAAAAATAAAAAAAATAATTAAAAATGT
CAGCTTTCGAAATTGAACATTTAGCAAGTTGCATTACTGCTCACGCATGGAATGCTGATA
GATCAAGAGTCGCTTTATGCCCAAATAATAATGAAGTACACATTTATGCCAAACAAGGAA
CCTCATGGGTTGTTGAACATGTTTTAGCTGAACATGATCAACTTGTTACATCAATTGATT
GGGCACCAAAAACTAATCGTATTTTAACATCATCACAAGATCGTAATGCATACGTTTGGA
CATTTAAAGATGGTCAATGGAAACCAGTATTAGTATTACTTCGTATTAATAGAGCAGCCA
CTCATGTTAAATGGTCACCACAAGAAAACAAATTTGCTGTTGCAACTGGTGCCAAATTGG
TATGTATTTGTTTCTTTGAAGAGGA----------ACATAAAGAAAGCCGATGGTCGTAG
TGTCACTCGTCCATACGGTGAAGTCGCTTTTGGTGAACCAGTCTTTGAATTTGACCAATG
CGCCTCATGGGTCCATGCCCTCAAATGGTCCCCATCCGGTAGTACTTTGGCTTACTCCTC
ACACGATGGTGTCTTTGCCGTTGCAAACTTTTCAACCAATCCACCAACCATCGAAAAACT
CAGAGTTCGTAATTTACCATTACGTGATCTCCTTTACATCACTGAAAACTCTATCGCCGG
TGTTGGTTACGATTGTGCTCCACTTTTAATCACTAATCAAAACGGTTGGAAATATTCTGG
TGAAATGGATAAGGCCTCTGAAGGTGGTGCTGCCGCTGGCTCTGAAACCTCTGCTCGTAA
ACTCTTCCAAAATAAAGTAGACCTTGGTGAATCAAAATCTGCCGATAAAAAGTTAACAAC
CGTTCATCAAAATTGTATTACTTCAATCGTTCCATTCAAGAGTGTAGGTGGTGTCGTCTC
TGATTTCAGTACCTCTGGTTTAGATGGTAACATTGTCGTATGGCATGTAAAAGCTCTTGA
AGCTAAAAATAAATTCAAAGTCATTTAAATGAGATAAAAAAATAAAAATTTTAAATTATA
AAAAAAAA
Length of connected seq. 1198
Full length Seq ID FC-AL11E
Full length Seq. 
>FC-AL11E.Seq
GTTTTTTTTTTACTTAATCAATAAAAAATTAAAACAAATCAATTATAGTGTAAACCCTTG
TAAAAATTAAATAAAAAACATTGTATTATATTCCACCTCATATTTTTTTTTTCCATATTA
AAATCACCTTTTTTATATATAATATTTTAAAAAAAAAATAAAAAAAATAATTAAAAATGT
CAGCTTTCGAAATTGAACATTTAGCAAGTTGCATTACTGCTCACGCATGGAATGCTGATA
GATCAAGAGTCGCTTTATGCCCAAATAATAATGAAGTACACATTTATGCCAAACAAGGAA
CCTCATGGGTTGTTGAACATGTTTTAGCTGAACATGATCAACTTGTTACATCAATTGATT
GGGCACCAAAAACTAATCGTATTTTAACATCATCACAAGATCGTAATGCATACGTTTGGA
CATTTAAAGATGGTCAATGGAAACCAGTATTAGTATTACTTCGTATTAATAGAGCAGCCA
CTCATGTTAAATGGTCACCACAAGAAAACAAATTTGCTGTTGCAACTGGTGCCAAATTGG
TATGTATTTGTTTCTTTGAAGAGGAACATGATTGGTGGGCATCAAATCATATCAAGAAGC
ATAAATCAACCGTATTAAAGGTTGACTGGCATCCAAACAATTTATTATTGGCAACCTCAT
CCTCTGACTACAAGGTTAGAGTATTCGACGCCTACATAAAGAAAGCCGATGGTCGTAGTG
TCACTCGTCCATACGGTGAAGTCGCTTTTGGTGAACCAGTCTTTGAATTTGACCAATGCG
CCTCATGGGTCCATGCCCTCAAATGGTCCCCATCCGGTAGTACCTTGGCTTACTCCTCAC
ACGATGGTGTCTTTGCCGTTGCAAACTTTTCAACCAATCCACCAACCATCGAAAAACTCA
GAGTTCGTAATTTACCATTACGTGATCTCCTTTACATCACTGAAAACTCTATCGCCGGTG
TTGGTTACGATTGTGCTCCACTTTTAATCACTAATCAAAACGGTTGGAAATATTCTGGTG
AAATGGATAAGGCCTCTGAAGGTGGTGCTGCCGCTGGCTCTGAAACCTCTGCTCGTAAAC
TCTTCCAAAATAAAGTAGACCTTGGTGAATCAAAATCTGCCGATAAAAAGTTAACAACCG
TTCATCAAAATTGTATTACTTCAATCGTTCCATTCAAGAGTGTAGGTGGTGTCGTCTCTG
ATTTCAGTACCTCTGGTTTAGATGGTAACATTGTCGTATGGCATGTAAAAGCTCTTGAAG
CTAAAAATAAATTCAAAGTCATTTAAATGAGATAAAAAAATAAAAATTTTAAATTATAAA
AAAAAAAAAAAAAAAAAAAAAAACATATATAAAACTCATTCAACTACCTTCAATTATTTC
CAAGAGTTAAATTTTATATATTGAAAAAAAAGAGATTATAGTAAAAAAATAAAAATTATA
AAAAAAGTATTTATTAAAAAAA
Length of full length seq. 1462