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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AK02
Library FC
(Link to library)
Clone ID FC-AK02
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15444-1
Original site URL
Representative seq. ID FC-AK02E
(Link to Original site)
Representative DNA sequence 
>FC-AK02 (FC-AK02Q) /CSM/FC/FC-AK/FC-AK02Q.Seq.d/
CAAAGACAAAGACGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTC
ACCCGTGTCTTTGACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGA
CCAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCC
ACTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGT
ATTGACTCTGTCACCAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCAC
GATGTTGACCCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTC
CCATACTGTATCGTCAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCT
TCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTT
GAATCCGCCAAACAAATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAAC
ACTTTATCTGGTCCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAA
AGTTTAGCCAAATCAAAGATCTAAGCTCTTTAATAGTTTAGCGAGACTCTCACTCTTTTT
TTAAATAATCAAATAAAATAAAGGTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
sequence update 1998. 5.25
Translated Amino Acid sequence 
QRQRRVLLKRLKVPPTINQFTRVFDKNTAVHLFKLLDKYRPEEASVKKARLLKIAEARAA
TPKGQAAPKAEKPVQHLRFGIDSVTKLIEKKKAKLVVIAHDVDPVELVLYLPTLCRRMDV
PYCIVKSKSRLGELVHMRNASCVALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGN
TLSGPARAILAKRQKAEAKESLAKSKI*al**fsetltlflnnqik*rffkkkkkkkkkk
kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
QRQRRVLLKRLKVPPTINQFTRVFDKNTAVHLFKLLDKYRPEEASVKKARLLKIAEARAA
TPKGQAAPKAEKPVQHLRFGIDSVTKLIEKKKAKLVVIAHDVDPVELVLYLPTLCRRMDV
PYCIVKSKSRLGELVHMRNASCVALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGN
TLSGPARAILAKRQKAEAKESLAKSKI*al**fsetltlflnnqik*rffkkkkkkkkkk
kkkk


Frame B:
kdkdvfy*rd*rfhqqstnspvsltktplsiysny*intdqkkpqsrkldy*kslkpvlp
lqkvkllqklknqsntyvsvltlspn*skrrkln*sslptmltqlnssytyqpsadvwms
htvssnlnpd*vn*ft*etlhvlpslvstlltqtnsly*lnppnkcstitvnterpgvvt
lylvqlvls*pnvkklkpkkv*pnqrsklfnslarlslff*iik*nkgslkkkkkkkkkk
kkkk


Frame C:
ktktcfikeikgstnnqpihpcl*qkhrcpfiqiir*iqtrrslsqes*iienr*spcch
skrsscsks*ktsptltfry*lchqinrkees*isrhcprc*ps*trliltnplqtygcp
ilyrqi*iqir*isshekrfmccphwcqlc*lkrtrfis*irqtnvqq*q*tqkdlgw*h
fiwssscylsqtsks*sqrkfsqikdlssliv*rdshsffk*snkikvl*kkkkkkkkkk
kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AK02 (FC-AK02Q) /CSM/FC/FC-AK/FC-AK02Q.Seq.d/                     1326   0.0
FC-187 (FC-187Q) /CSM/CG/CG-FC/FC-187Q.Seq.d/                        1326   0.0
VHC562 (VHC562Q) /CSM/VH/VHC5-C/VHC562Q.Seq.d/                       1310   0.0
FC-BQ11 (FC-BQ11Q) /CSM/FC/FC-BQ/FC-BQ11Q.Seq.d/                     1308   0.0
VSF364 (VSF364Q) /CSM/VS/VSF3-C/VSF364Q.Seq.d/                       1289   0.0
VSJ540 (VSJ540Q) /CSM/VS/VSJ5-B/VSJ540Q.Seq.d/                       1275   0.0
FC-IC1346 (FC-IC1346Q) /CSM/FC-IC/FC-IC1346Q.Seq.d/                  1267   0.0
FC-IC1585 (FC-IC1585Q) /CSM/FC-IC/FC-IC1585Q.Seq.d/                  1261   0.0
FC-BA22 (FC-BA22Q) /CSM/FC/FC-BA/FC-BA22Q.Seq.d/                     1255   0.0
VSG491 (VSG491Q) /CSM/VS/VSG4-D/VSG491Q.Seq.d/                       1243   0.0
own update 2003.10.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   668   0.0    3
BQ476680|BQ476680.1 curculio4h01.g Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 3', mRNA sequence.    54   2e-08  3
BQ476431|BQ476431.1 curculio4h01.b Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 5', mRNA sequence.    54   2e-06  2
BQ623728|BQ623728.1 USDA-FP_00819 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00819 5', mRNA sequence.    56   3e-05  2
CA755632| (Y15171) ribosomal protein L7a [Takifugu rubripes], mRNA sequence.    60   4e-05  1
CA845440|CA845440.1 hab99h11.y1 Fugu hgmpD adult gut Takifugu rubripes cDNA clone IMAGE:6356972 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46   0.001  2
CA330639|CA330639.1 hab08d06.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362938 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46   0.002  2
CA846589|CA846589.1 hab83c10.y1 Fugu hgmpC adult gill Takifugu rubripes cDNA clone IMAGE:6355194 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46   0.002  2
CA330747|CA330747.1 haa65h09.y2 Fugu hgmpF adult brain Takifugu rubripes cDNA clone 6358888 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46   0.002  2
CA330317|CA330317.1 hab04g11.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362708 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46   0.002  2
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a;                     353   4e-96
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ...   181   2e-44
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso...   178   2e-43
EU259814_1(EU259814|pid:none) Spodoptera exigua ribosomal protei...   176   7e-43
EU934303_1(EU934303|pid:none) TSA: Anopheles darlingi AD-165 60S...   176   9e-43
BC122243_1(BC122243|pid:none) Danio rerio zgc:153325, mRNA (cDNA...   175   1e-42
BC076693_1(BC076693|pid:none) Xenopus tropicalis hypothetical pr...   171   2e-41
BC118908_1(BC118908|pid:none) Xenopus tropicalis hypothetical pr...   171   2e-41
(O76732) RecName: Full=60S ribosomal protein L7a;                     171   2e-41
EU124958_1(EU124958|pid:none) Arenicola marina ribosomal protein...   171   2e-41
protein update 2009. 7. 2
PSORT 

 psg: 0.71  gvh: 0.41  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.51  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 1.00  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: peroxisomal

>> prediction for FC-AK02 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AK02E
Full length Seq. 
>FC-AK02E.Seq
CAAAGACAAAGACGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTC
ACCCGTGTCTTTGACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGA
CCAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCC
ACTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGT
ATTGACTCTGTCACCAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCAC
GATGTTGACCCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTC
CCATACTGTATCGTCAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCT
TCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTT
GAATCCGCCAAACAAATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAAC
ACTTTATCTGGTCCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAA
AGTTTAGCCAAATCAAAGATCTAAGCTCTTTAATAGTTTAGCGAGACTCTCACTCTTTTT
TTAAATAATCAAATAAAATAAAGGTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
Length of full length seq. 733