NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFH664
Library AF
(Link to library)
Clone ID AFH664
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFH664Z
(Link to Original site)
Representative DNA sequence 
>AFH664 (AFH664Q) /CSM/AF/AFH6-C/AFH664Q.Seq.d/
XXXXXXXXXXCTCTATGCTGACTCTTTAGCTCGTTACAGTAAATCACCATACATTTATCC
ATTATATGGTTTAGGTGAATTACCACAAGCATTTGCCCGTTTATCTGCTATCTATGGTGG
TACATATATGCTTAATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTAT
TAAAGTTACATCTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATA
TTTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGG
TCCAATTCCATCTGCTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACA
AGTTAAACGTCAATCAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCC
AAAGGGTAAATACATTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGA
ATTAGCACCAGCTTACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGA
TTTCATTGAACCAATTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCATATGA
TGCTACCTCTCACTTTGAAACCACTTGTGAAGATGTC
sequence update 2001. 6. 2
Translated Amino Acid sequence 
---YADSLARYSKSPYIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIVFDEEKKIIK
VTSEGETVTCDKIVCDPSYFPNKVQKKGKIIRSICILNGPIPSADKKFESLQIIIPQKQV
KRQSDMYVGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQEKFVYISDF
IEPIADGTADNVFISKSYDATSHFETTCEDV
Translated Amino Acid sequence (All Frames) 
Frame A:
---smltl*lvtvnhhtfihymv*vnyhkhlpvyllsmvvhiclinqlkilfsmkkrkll
klhlkvkl*hviklfvihhisqikfkrkvklfvqfvf*mvqfhllirnlnhskslshknk
lnvnqictlvlchplivsvqrvntlpsfqpllkpmnqrkn*hqltly*vqfkrnlsifli
slnqllmvlptmfssqnhmmlpltlkplvkm


Frame B:
---lc*lfsslq*itihlsiiwfr*ittsicpficylwwyiya**tn*kycfr*rkeny*
syi*r*ncnm**ncl*siifpk*ssker*nysfnlyfewsnsic**ei*itpnhyptkts
*tsiryvrwcyvirslclskg*ihchrfshc*nq*treristslrfirsnsreiclyf*f
h*tnc*wycrqcfhlkii*cylsl*nhl*rc


Frame C:
---YADSLARYSKSPYIYPLYGLGELPQAFARLSAIYGGTYMLNKPIENIVFDEEKKIIK
VTSEGETVTCDKIVCDPSYFPNKVQKKGKIIRSICILNGPIPSADKKFESLQIIIPQKQV
KRQSDMYVGVMSSAHCVCPKGKYIAIVSATVETNEPEKELAPAYALLGPIQEKFVYISDF
IEPIADGTADNVFISKSYDATSHFETTCEDV
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ449 (SFJ449Q) /CSM/SF/SFJ4-C/SFJ449Q.Seq.d/                       1243   0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/                       1243   0.0
CFJ161 (CFJ161Q) /CSM/CF/CFJ1-C/CFJ161Q.Seq.d/                       1243   0.0
CFE844 (CFE844Q) /CSM/CF/CFE8-B/CFE844Q.Seq.d/                       1243   0.0
AFN874 (AFN874Q) /CSM/AF/AFN8-D/AFN874Q.Seq.d/                       1243   0.0
AFH664 (AFH664Q) /CSM/AF/AFH6-C/AFH664Q.Seq.d/                       1243   0.0
AFE889 (AFE889Q) /CSM/AF/AFE8-D/AFE889Q.Seq.d/                       1243   0.0
AFD453 (AFD453Q) /CSM/AF/AFD4-C/AFD453Q.Seq.d/                       1243   0.0
CFH888 (CFH888Q) /CSM/CF/CFH8-D/CFH888Q.Seq.d/                       1241   0.0
SFL120 (SFL120Q) /CSM/SF/SFL1-A/SFL120Q.Seq.d/                       1239   0.0
own update 2003. 5.14
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL408803|AL408803.1 T3 end of clone AV0AA010G06 of library AV0AA from strain CBS 379 ofSaccharomyces exiguus.    54   7e-10  3
AJ005836|AJ005836.1 Cicer arietinum mRNA for GDP dissociation inhibitor (gdi).    38   1e-09  4
BG790353|BG790353.1 sae68c10.y1 Gm-c1064 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1064-3212 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   3e-08  2
BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1199 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   3e-08  2
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   3e-08  2
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   3e-08  2
BI315670|BI315670.1 saf75f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-2184 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence.    62   1e-07  2
AI437629|AI437629.1 sa37e09.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1505 5' similar to TR:O24653 O24653 GDI2. ;, mRNA sequence.    62   1e-07  2
CN141329|CN141329.1 OX1_50_F11.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_50_F11_A002 5', mRNA sequence.    68   2e-07  1
BW478676|BW478676.1 Ciona intestinalis cDNA, clone:cima018l21, 5'end, single read.    46   5e-07  4
dna update 2004. 6.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ...   266   5e-70
AF130987_1(AF130987|pid:none) Rattus norvegicus RAB GDP dissocia...   264   1e-69
(O97555) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   264   1e-69
(P50398) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   264   1e-69
X74402_1(X74402|pid:none) R.norvegicus rab GDI alpha mRNA.            264   1e-69
(P21856) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   263   2e-69
(Q8HXX7) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   263   3e-69
(P31150) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   263   3e-69
A54091(A54091;S35964;A37996)rab GDP dissociation inhibitor alpha...   263   3e-69
AB171705_1(AB171705|pid:none) Macaca fascicularis brain cDNA clo...   263   3e-69
protein update 2009. 4.21
PSORT 

 psg: 0.85  gvh: 0.62  alm: 0.47  top: 0.60  tms: 0.00  mit: 0.29  mip: 0.06
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for AFH664 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFH664Z
3' end seq. 
>AFH664Z.Seq
----------CTCTATGCTGACTCTTTAGCTCGTTACAGTAAATCACCATACATTTATCC
ATTATATGGTTTAGGTGAATTACCACAAGCATTTGCCCGTTTATCTGCTATCTATGGTGG
TACATATATGCTTAATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAAATTAT
TAAAGTTACATCTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCATCATA
TTTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTATTCGTTCAATTTGTATTTTGAATGG
TCCAATTCCATCTGCTGATAAGAAATTTGAATCACTCCAAATCATTATCCCACAAAAACA
AGTTAAACGTCAATCAGATATGTACGTTGGTGTTATGTCATCCGCTCATTGTGTCTGTCC
AAAGGGTAAATACATTGCCATCGTTTCAGCCACTGTTGAAACCAATGAACCAGAGAAAGA
ATTAGCACCAGCTTACGCTTTATTAGGTCCAATTCAAGAGAAATTTGTCTATATTTCTGA
TTTCATTGAACCAATTGCTGATGGTACTGCCGACAATGTTTTCATCTCAAAATCATATGA
TGCTACCTCTCACTTTGAAACCACTTGTGAAGATGTC
Length of 3' end seq. 627
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -