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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AI24
Library FC
(Link to library)
Clone ID FC-AI24
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID FC-AI24Z
(Link to Original site)
Representative DNA sequence 
>FC-AI24 (FC-AI24Q) /CSM/FC/FC-AI/FC-AI24Q.Seq.d/
XXXXXXXXXXAAATTAGAAAACAAAAATCAAAAGATAGTTATTTTTCATTAAAAACAAAA
CAATCTTCAGAATCTGGTAGCAAAAGAGCAAATCCAGCAGAATTAAGAGCACAAAAAGAT
ATTGATGAAATGGAAGTTCCAACTGGTTGTGCAGTTTCATTCAAAGATACAAATGATATT
TTGAACTTTAATTTATCAATTACTCCAACTGATGGACTTTATCAATCAGCAACATTCCAA
TTTACAATTAATATTCCATCAACTTATCCATACGACCCACCAAAGGTTCATTGTGATACT
CTTGTTTACCATCCAAACATTGATTTAGAAGGTCATGTTTGCCTTAATATTCTTAGACAA
GATTGGATGCCAGTTTTAAATATTGGTACTGTTATTTTTGGTCTCATGACCTTATTTTTA
GAACCAAATCCAGATGATCCATTAAATAAAGATGCAGCTCAATTGATGATAGATAATAAA
AAGACTTTTGAAGCAAATGTTAGACAATCATTACGTGGAGGTTATATTTCAAATCGTCAA
TTCCCAAAATTATTATAGATAATGATAGTAAACGATTAACATCAATAATATAATAATAGT
AATTATAATAATCAATTCAATTCAATCCAACTTAATAAACAACCCCAATCCATCCCAAAC
CATGATAAAACAAAATTGAATTTATTGAACCCCCCAAAACGCA
sequence update 1996.12. 6
Translated Amino Acid sequence 
---IRKQKSKDSYFSLKTKQSSESGSKRANPAELRAQKDIDEMEVPTGCAVSFKDTNDIL
NFNLSITPTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQD
WMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVRQSLRGGYISNRQF
PKLL*imivnd*hq*ynnsnynnqfnsiqlnkqpqsipnhdktklnllnppkr
Translated Amino Acid sequence (All Frames) 
Frame A:
---n*ktkikr*lffiknktifriw*qkskssrikstkry**ngssnwlcsfiqryk*yf
el*finysn*wtlsisnipiyn*ysinlsirptkgsl*ysclpskh*frrsclp*ys*tr
ldasfkywycyfwshdlifrtksr*sik*rcssiddr**kdf*skc*tiitwrlyfkssi
pkiiidndskrltsii****l**siqfnpt**ttpihpkp**nkiefieppkt


Frame B:
---IRKQKSKDSYFSLKTKQSSESGSKRANPAELRAQKDIDEMEVPTGCAVSFKDTNDIL
NFNLSITPTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQD
WMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVRQSLRGGYISNRQF
PKLL*imivnd*hq*ynnsnynnqfnsiqlnkqpqsipnhdktklnllnppkr


Frame C:
---lenknqkivifh*kqnnlqnlvakeqiqqn*ehkkilmkwkfqlvvqfhskiqmif*
tliyqllqlmdfinqqhsnlqlifhqlihtthqrfivillftiqtli*kvmfalifldki
gcqf*ilvllflvs*pyf*nqiqmih*ikmqln***iikrllkqmldnhyvevifqivns
qnyyr****tininniiiviiiinsiqsnlinnpnpsqtmikqn*iy*tpqna
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH811 (VSH811Q) /CSM/VS/VSH8-A/VSH811Q.Seq.d/                       1122   0.0
FC-AI24 (FC-AI24Q) /CSM/FC/FC-AI/FC-AI24Q.Seq.d/                     1122   0.0
FC-AG20 (FC-AG20Q) /CSM/FC/FC-AG/FC-AG20Q.Seq.d/                     1122   0.0
FC-127 (FC-127Q) /CSM/CG/CG-FC/FC-127Q.Seq.d/                        1122   0.0
FC-BA10 (FC-BA10Q) /CSM/FC/FC-BA/FC-BA10Q.Seq.d/                      912   0.0
VSE405 (VSE405Q) /CSM/VS/VSE4-A/VSE405Q.Seq.d/                        793   0.0
VSE646 (VSE646Q) /CSM/VS/VSE6-B/VSE646Q.Seq.d/                         42   0.011
SSK872 (SSK872Q) /CSM/SS/SSK8-C/SSK872Q.Seq.d/                         42   0.011
AHA352 (AHA352Q) /CSM/AH/AHA3-C/AHA352Q.Seq.d/                         42   0.011
VSF819 (VSF819Q) /CSM/VS/VSF8-A/VSF819Q.Seq.d/                         36   0.69
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AZ687661|AZ687661.1 ENTKY10TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60  3e-11  2
AZ683241|AZ683241.1 ENTIC80TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  6e-09  2
BG269750|BG269750.1 L48-3847T3 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L48-3847 5', mRNA sequence.    64  2e-06  1
BE034287|BE034287.1 MH02G03 MH Mesembryanthemum crystallinum cDNA 5' similar to ubiquitin (rub1) conjugating enzyme, mRNA sequence.    64  2e-06  1
BI511034|BI511034.1 BB160004A20G06 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160004A20G06 5', mRNA sequence.    54  3e-05  2
BI515520|BI515520.1 BB160019B10G06 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160019B10G06 5', mRNA sequence.    54  4e-05  2
BI514072|BI514072.1 BB160014A21B06 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160014A21B06 5', mRNA sequence.    54  4e-05  2
BI513985|BI513985.1 BB160014A20B06 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160014A20B06 5', mRNA sequence.    54  4e-05  2
AP002471|AP002471.2 Homo sapiens genomic DNA, chromosome 18p11.3 clone:RP11-694N4, WORKING DRAFT SEQUENCE, 20 unordered pieces.    50  0.035  2
BE176024|BE176024.1 RC2-HT0584-200300-013-h12 HT0584 Homo sapiens cDNA, mRNA sequence.    50  0.036  1
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(A3KN22) RecName: Full=NEDD8-conjugating enzyme Ubc12;          ...   207   2e-52
(Q6P8D9) RecName: Full=NEDD8-conjugating enzyme Ubc12;          ...   204   2e-51
(Q6DCZ9) RecName: Full=NEDD8-conjugating enzyme Ubc12;          ...   203   3e-51
BT059712_1(BT059712|pid:none) Salmo salar clone ssal-rgf-540-172...   202   6e-51
DQ311351_1(DQ311351|pid:none) Bombyx mori ubiquitin-conjugating ...   192   8e-48
FM992690_44(FM992690|pid:none) Candida dubliniensis CD36 chromos...   190   3e-47
CP000496_273(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...   190   4e-47
DQ056143_3(DQ056143|pid:none) Coprinellus disseminatus strain C3...   187   3e-46
(Q9ZU75) RecName: Full=Probable NEDD8-conjugating enzyme Ubc12-l...   186   4e-46
DQ200379_1(DQ200379|pid:none) Solanum tuberosum clone 061E06 RUB...   186   7e-46
protein update 2009. 4.13
PSORT 

 psg: 0.66  gvh: 0.29  alm: 0.30  top: 0.43  tms: 0.07  mit: 0.33  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: mitochondrial
	 20.0 %: nuclear
	 12.0 %: cytoplasmic
	 12.0 %: Golgi
	 12.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for FC-AI24 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-AI24Z
3' end seq. 
>FC-AI24Z.Seq
----------AAATTAGAAAACAAAAATCAAAAGATAGTTATTTTTCATTAAAAACAAAA
CAATCTTCAGAATCTGGTAGCAAAAGAGCAAATCCAGCAGAATTAAGAGCACAAAAAGAT
ATTGATGAAATGGAAGTTCCAACTGGTTGTGCAGTTTCATTCAAAGATACAAATGATATT
TTGAACTTTAATTTATCAATTACTCCAACTGATGGACTTTATCAATCAGCAACATTCCAA
TTTACAATTAATATTCCATCAACTTATCCATACGACCCACCAAAGGTTCATTGTGATACT
CTTGTTTACCATCCAAACATTGATTTAGAAGGTCATGTTTGCCTTAATATTCTTAGACAA
GATTGGATGCCAGTTTTAAATATTGGTACTGTTATTTTTGGTCTCATGACCTTATTTTTA
GAACCAAATCCAGATGATCCATTAAATAAAGATGCAGCTCAATTGATGATAGATAATAAA
AAGACTTTTGAAGCAAATGTTAGACAATCATTACGTGGAGGTTATATTTCAAATCGTCAA
TTCCCAAAATTATTATAGATAATGATAGTAAACGATTAACATCAATAATATAATAATAGT
AATTATAATAATCAATTCAATTCAATCCAACTTAATAAACAACCCCAATCCATCCCAAAC
CATGATAAAACAAAATTGAATTTATTGAACCCCCCAAAACGCA
Length of 3' end seq. 693
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -