>FC-AI23 (FC-AI23Q) /CSM/FC/FC-AI/FC-AI23Q.Seq.d/
XXXXXXXXXXTACTCAACACAGTTTAGAATCAATTAAATTAAAATGGGATAAACTCAATA
CACTCGCTAAAAAGAATGAACAAGTTGTTGAAGGTGAAATTCTTGCTAAACAATTAACTG
GTGTTACTGCTGAAGAATTAAGTGAATTTAAAGCCTGCTTCTCACATTTCGATAAGGACA
ACGATAACAAATTAAATCGTCTTGAATTCTCCTCTTGCTTGAAGAGTATCGGAGATGAAT
TAACTGAAGAACAATTAAATCAAGTCATCAGTAAAATCGATACCGATGGTAATGGTACCA
TTTCATTCGAAGAATTTATTGATTACATGGTTTCATCACGTAAAGGTACAGACAGCGTTG
AATCAACTAAAGCTGCATTCAAAGTTATGGCTGAGGATAAAGATTTCATTACTGAAGCTC
AAATTCGTGCTGCTATCTCTGATTCTAAACAAATTGATTATTTACTCGCCAGTATGCCAG
CTGTTGAAGGTGGTTTTGACTACAATTCATTTGCTGAAAAATTATACCAATAAACAAATA
ATTATTAATTATAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

---TQHSLESIKLKWDKLNTLAKKNEQVVEGEILAKQLTGVTAEELSEFKACFSHFDKDN
DNKLNRLEFSSCLKSIGDELTEEQLNQVISKIDTDGNGTISFEEFIDYMVSSRKGTDSVE
STKAAFKVMAEDKDFITEAQIRAAISDSKQIDYLLASMPAVEGGFDYNSFAEKLYQ*tnn
y*l*iqkkkkkkkkkkkkkkkkk

Frame A:
---TQHSLESIKLKWDKLNTLAKKNEQVVEGEILAKQLTGVTAEELSEFKACFSHFDKDN
DNKLNRLEFSSCLKSIGDELTEEQLNQVISKIDTDGNGTISFEEFIDYMVSSRKGTDSVE
STKAAFKVMAEDKDFITEAQIRAAISDSKQIDYLLASMPAVEGGFDYNSFAEKLYQ*tnn
y*l*iqkkkkkkkkkkkkkkkkk


Frame B:
---lntv*nqln*nginsihslkrmnkllkvkfllnn*lvlllkn*vnlkpashisirtt
itn*ivlnspla*rvsemn*lknn*ikssvksipmvmvpfhsknllitwfhhvkvqtaln
qlklhsklwlrikisllklkfvllslilnkliiyspvcqllkvvlttihllknytnkqii
inykykkkkkkkkkkkkkkkkkk


Frame C:
---stqfrin*ikmg*tqytr*ke*tsc*r*nsc*tinwcyc*rik*i*sllltfr*gqr
*qikss*illlleeyrr*in*rtiksshq*nryrw*wyhfirriy*lhgfit*ryrqr*i
n*sciqsyg*g*rfhy*ssnsccyl*f*tn*lftrqyasc*rwf*lqfic*kiipink*l
liintkkkkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AI23 (FC-AI23Q) /CSM/FC/FC-AI/FC-AI23Q.Seq.d/                     1086   0.0
SLB191 (SLB191Q) /CSM/SL/SLB1-D/SLB191Q.Seq.d/                       1080   0.0
VHH675 (VHH675Q) /CSM/VH/VHH6-D/VHH675Q.Seq.d/                       1051   0.0
VHD544 (VHD544Q) /CSM/VH/VHD5-B/VHD544Q.Seq.d/                       1035   0.0
VHD492 (VHD492Q) /CSM/VH/VHD4-D/VHD492Q.Seq.d/                       1019   0.0
VHJ587 (VHJ587Q) /CSM/VH/VHJ5-D/VHJ587Q.Seq.d/                       1009   0.0
VHH621 (VHH621Q) /CSM/VH/VHH6-A/VHH621Q.Seq.d/                       1009   0.0
CHK564 (CHK564Q) /CSM/CH/CHK5-C/CHK564Q.Seq.d/                       1009   0.0
VHQ459 (VHQ459Q) /CSM/VH/VHQ4-C/VHQ459Q.Seq.d/                        977   0.0
VHP489 (VHP489Q) /CSM/VH/VHP4-D/VHP489Q.Seq.d/                        965   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Y00689|Y00689.1 Dictyostelium discoideum mRNA for non-muscular alpha-actinin 3.  1078  0.0  1
AL714003|AL714003.6 Zebrafish DNA sequence from clone BUSM1-167C3 in linkage group 9  Contains the 3' end of a novel gene similar to TTN (titin), a novel  gene similar to FKBP (FK506-binding protein) and the 5' part of a  novel collagen gene.    38  0.014  3
Y18166|Y18166.1 Suberites domuncula mRNA for calmodulin.          48  0.12  1
CC707670|CC707670.1 OGWBQ42TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0530H11, genomic survey sequence.    46  0.49  1
AX598943|AX598943.1 Sequence 283 from Patent WO02077272.          36  0.76  2
AX598797|AX598797.1 Sequence 137 from Patent WO02077272.          36  0.76  2
AX705391|AX705391.1 Sequence 60 from Patent WO03014388.           36  0.76  2
AX705369|AX705369.1 Sequence 38 from Patent WO03014388.           36  0.76  2
AL117672|AL117672.5 Human chromosome 14 DNA sequence BAC R-142C1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human).    36  1.0  4
AC122138|AC122138.2 Homo sapiens chromosome 4 clone RP11-818C3, complete sequence.    36  1.1  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FADOAA(S00103;A29006) alpha-actinin - slime mold (Dictyostelium ...   339   4e-92
BC015620_1(BC015620|pid:none) Homo sapiens actinin, alpha 4, mRN...   123   4e-27
D89980_1(D89980|pid:none) Homo sapiens mRNA for alpha actinin 4,...   123   4e-27
(Q5RCS6) RecName: Full=Alpha-actinin-4; AltName: Full=Non-muscle...   123   4e-27
(O43707) RecName: Full=Alpha-actinin-4; AltName: Full=Non-muscle...   123   4e-27
AK294906_1(AK294906|pid:none) Homo sapiens cDNA FLJ51840 complet...   122   7e-27
AK003570_1(AK003570|pid:none) Mus musculus 18-day embryo whole b...   120   2e-26
(P20111) RecName: Full=Alpha-actinin-2; AltName: Full=Alpha-acti...   120   3e-26
AK150044_1(AK150044|pid:none) Mus musculus bone marrow macrophag...   120   3e-26
AK297618_1(AK297618|pid:none) Homo sapiens cDNA FLJ55142 complet...   120   4e-26

 psg: 0.62  gvh: 0.46  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for FC-AI23 is nuc

>FC-AI23Z.Seq
----------TACTCAACACAGTTTAGAATCAATTAAATTAAAATGGGATAAACTCAATA
CACTCGCTAAAAAGAATGAACAAGTTGTTGAAGGTGAAATTCTTGCTAAACAATTAACTG
GTGTTACTGCTGAAGAATTAAGTGAATTTAAAGCCTGCTTCTCACATTTCGATAAGGACA
ACGATAACAAATTAAATCGTCTTGAATTCTCCTCTTGCTTGAAGAGTATCGGAGATGAAT
TAACTGAAGAACAATTAAATCAAGTCATCAGTAAAATCGATACCGATGGTAATGGTACCA
TTTCATTCGAAGAATTTATTGATTACATGGTTTCATCACGTAAAGGTACAGACAGCGTTG
AATCAACTAAAGCTGCATTCAAAGTTATGGCTGAGGATAAAGATTTCATTACTGAAGCTC
AAATTCGTGCTGCTATCTCTGATTCTAAACAAATTGATTATTTACTCGCCAGTATGCCAG
CTGTTGAAGGTGGTTTTGACTACAATTCATTTGCTGAAAAATTATACCAATAAACAAATA
ATTATTAATTATAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA