>FC-AI19 (FC-AI19Q) /CSM/FC/FC-AI/FC-AI19Q.Seq.d/
XXXXXXXXXXTATGAGAAAAAGCTATTGAAATTCTATCAAAATTATTTAGTATTAATTGA
AAATTCAATTAGTAATATTCTATCATTATTGGCAAGAAAAGTACCAAATACCAATGGTAT
TGGATTCTTTAAAATCAATGGTACCAACTATAGTAATAATGATTTAACATCATTATTACA
ATGTATTTTGAAGGCTGTTTCAACATTATTAATCACTCATCCACATTTCAATTTCCGTAC
CAATTTAGTCACAATCACATCACGTTTTACAGTTTACAAAGATAAAGATATTGCAATGAT
GTGTTTGGAAGCCGTTAAATCATTATTTGAACATGATTCAACTGGTGGTGAAACTTCATT
AGAGGTAGTACGTTGTTTGGCAAATGTAGCAAAATCTGCAAACTATTTAATTGATCCAAA
GGTTGTACGTGTTTTCTTGGCAATGCGTTTAACAGATGTAATCGAGAAAATCAATCCATT
CGGGTTCGCATCTGATGAGGCAAAGTTGGGTAAAAAAGATAGAAAGCATCTAACTCGTAC
TGAAAAGAAGAAAAAAAAAAAAAAATAATAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAA
AATTGTTTAATTAATTAGTTAATAAAAAAAATTAAATAAAATAAAAAAAACTATTATGCA
ATCAAAAAAAA

---EKKLLKFYQNYLVLIENSISNILSLLARKVPNTNGIGFFKINGTNYSNNDLTSLLQC
ILKAVSTLLITHPHFNFRTNLVTITSRFTVYKDKDIAMMCLEAVKSLFEHDSTGGETSLE
VVRCLANVAKSANYLIDPKVVRVFLAMRLTDVIEKINPFGFASDEAKLGKKDRKHLTRTE
KKKKKKK**kkkekkkkekiv*lis**kklnkikktimqskk

Frame A:
---mrksy*nsikii*y*lkiqlvifyhywqekyqipmvldslksmvptivimi*hhyyn
vf*rlfqhy*slihisisvpi*sqshhvlqftkikilq*cvwkplnhylnmiqlvvklh*
r*yvvwqm*qnlqti*liqrlyvfswqcv*qm*srksihsgshlmrqswvkkiesi*lvl
krrkkkknnkkkkkkkkkkklfn*lvnkkn*ik*kkllcnqkk


Frame B:
---*ekaieilsklfsin*kfn**ysiiigkkstkyqwywil*nqwyql****fniiitm
yfegcfniinhsstfqfpyqfshnhitfyslqr*rycndvfgsr*iii*t*fnww*nfir
gstlfgkcskicklfn*skgctcflgnafnrcnrenqsirvri**gkvg*kr*kasnsy*
keekkkkiikkkrkkkkrknclin*likkik*nkknyyaikk


Frame C:
---EKKLLKFYQNYLVLIENSISNILSLLARKVPNTNGIGFFKINGTNYSNNDLTSLLQC
ILKAVSTLLITHPHFNFRTNLVTITSRFTVYKDKDIAMMCLEAVKSLFEHDSTGGETSLE
VVRCLANVAKSANYLIDPKVVRVFLAMRLTDVIEKINPFGFASDEAKLGKKDRKHLTRTE
KKKKKKK**kkkekkkkekiv*lis**kklnkikktimqskk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AI19 (FC-AI19Q) /CSM/FC/FC-AI/FC-AI19Q.Seq.d/                     1070   0.0
FC-AG15 (FC-AG15Q) /CSM/FC/FC-AG/FC-AG15Q.Seq.d/                     1070   0.0
FC-125 (FC-125Q) /CSM/CG/CG-FC/FC-125Q.Seq.d/                        1070   0.0
FC-AV14 (FC-AV14Q) /CSM/FC/FC-AV/FC-AV14Q.Seq.d/                      942   0.0
FC-AR23 (FC-AR23Q) /CSM/FC/FC-AR/FC-AR23Q.Seq.d/                      833   0.0
FC-AT12 (FC-AT12Q) /CSM/FC/FC-AT/FC-AT12Q.Seq.d/                      791   0.0
VFC523 (VFC523Q) /CSM/VF/VFC5-A/VFC523Q.Seq.d/                         44   0.003
CHO758 (CHO758Q) /CSM/CH/CHO7-C/CHO758Q.Seq.d/                         38   0.17
AHG664 (AHG664Q) /CSM/AH/AHG6-C/AHG664Q.Seq.d/                         38   0.17
VHJ533 (VHJ533Q) /CSM/VH/VHJ5-B/VHJ533Q.Seq.d/                         36   0.66

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC110762|AC110762.4 Homo sapiens BAC clone RP11-50O5 from 4, complete sequence.    48  0.14  1
AC093890|AC093890.3 Homo sapiens BAC clone RP11-673E1 from 4, complete sequence.    48  0.14  1
AF275248|AF275248.1 Rhopalosiphum maidis 12S small subunit ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S large subunit ribosomal RNA gene, partial sequence; mitochondrial genes for mitochondrial products.    40  0.29  2
AP004517|AP004517.1 Lotus japonicus genomic DNA, chromosome 6, clone:LjT14B06, TM0045.    40  0.53  3
AP003719|AP003719.3 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-25P2.    36  0.87  4
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34  0.93  12
X76268|X76268.1 Variola virus (Garcia-1966) A10L, A11R, A12L, A13L, A14L, A15L,  A16L, A17L, A18R, A19L, A21R, A22R, A23R, A24R, A25L, A26L genes.    38  1.2  4
AC016359|AC016359.3 Homo sapiens chromosome 2 clone RP11-99D8 map 2, WORKING DRAFT SEQUENCE, 16 unordered pieces.    48  1.3  2
AC019169|AC019169.3 Homo sapiens chromosome UL clone RP11-161J9, WORKING DRAFT SEQUENCE, 25 unordered pieces.    44  1.5  2
BX510308|BX510308.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36  1.6  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8VI84) RecName: Full=Nucleolar complex protein 3 homolog;     ...    71   3e-11
AK292520_1(AK292520|pid:none) Homo sapiens cDNA FLJ77615 complet...    71   3e-11
BC078188_1(BC078188|pid:none) Danio rerio nucleolar complex asso...    71   3e-11
AK302028_1(AK302028|pid:none) Homo sapiens cDNA FLJ59781 complet...    71   3e-11
(Q6DRN3) RecName: Full=Nucleolar complex protein 3 homolog;     ...    71   3e-11
(Q8WTT2) RecName: Full=Nucleolar complex protein 3 homolog;     ...    71   3e-11
(Q5R952) RecName: Full=Nucleolar complex protein 3 homolog;     ...    70   5e-11
(Q91Y26) RecName: Full=Nucleolar complex protein 3 homolog;     ...    70   7e-11
EU652315_16(EU652315|pid:none) Adineta vaga speckle-type POZ pro...    67   4e-10
CR382136_258(CR382136|pid:none) Debaryomyces hansenii strain CBS...    64   4e-09

 psg: 0.77  gvh: 0.54  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.14
 nuc: 0.27  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for FC-AI19 is nuc

>FC-AI19Z.Seq
----------TATGAGAAAAAGCTATTGAAATTCTATCAAAATTATTTAGTATTAATTGA
AAATTCAATTAGTAATATTCTATCATTATTGGCAAGAAAAGTACCAAATACCAATGGTAT
TGGATTCTTTAAAATCAATGGTACCAACTATAGTAATAATGATTTAACATCATTATTACA
ATGTATTTTGAAGGCTGTTTCAACATTATTAATCACTCATCCACATTTCAATTTCCGTAC
CAATTTAGTCACAATCACATCACGTTTTACAGTTTACAAAGATAAAGATATTGCAATGAT
GTGTTTGGAAGCCGTTAAATCATTATTTGAACATGATTCAACTGGTGGTGAAACTTCATT
AGAGGTAGTACGTTGTTTGGCAAATGTAGCAAAATCTGCAAACTATTTAATTGATCCAAA
GGTTGTACGTGTTTTCTTGGCAATGCGTTTAACAGATGTAATCGAGAAAATCAATCCATT
CGGGTTCGCATCTGATGAGGCAAAGTTGGGTAAAAAAGATAGAAAGCATCTAACTCGTAC
TGAAAAGAAGAAAAAAAAAAAAAAATAATAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAA
AATTGTTTAATTAATTAGTTAATAAAAAAAATTAAATAAAATAAAAAAAACTATTATGCA
ATCAAAAAAAA