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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AI18
Library FC
(Link to library)
Clone ID FC-AI18
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15590-1
Original site URL
Representative seq. ID FC-AI18P
(Link to Original site)
Representative DNA sequence 
>FC-AI18 (FC-AI18Q) /CSM/FC/FC-AI/FC-AI18Q.Seq.d/
GTTAAATTCACAGAGGTACCAGCCTACCAACCATGGCATGAAGAAGTTAAAATGTATTCA
TGTGTTGATACAGCAGATTCTAATAAATTGTTAGGTCATTTCTATATTGATTTATTCCCA
CGTGAGGGTAAATATTCTCATGCTGCAGTATGGCCATTAATTCCTGGTTATGAAAGAGCC
GATGGTGAAAAGCAATATCCAGTAGCTGCAATGCTTTGTAATTTCACTAAACCAACTCCA
ACCACTCCATCATTATTAACCCATGATGAGGTTGTCACTTTTTTCCATGAATTTGGTCAT
GTTATGCATAATATGTCTACCAAAGTTCATTATTCAATGTTTAGTGGTACAAGTGTAGAA
AGAGATTTTGTTGAATGTCCAAGTCAATTATTTGAATTTTGGTGTTGGAATAAAGATGTA
CTCGTCAATAAATTATCTGGTCACTNNAAAGATCATTCAAAGAAATTACCAACTGATTTA
GTTGAAAGAATGATTGCTGCAAAGAATTTAAATGTTGCCATCTTTTATCTTCGTCAAATT
CAATTAGCTCTCTTTGATAATGCTATTCATAGTGGTAATCCTGCAAACTTTACCAATACT
GCTGATCCTTATCATCGTATTXXXXXXXXXXGTCATTTGGTCATTTATTAGGTGGTTATG
ATGCTCAATATTATTCATATCTTTATTCTGAATGTTTCAGTGCTAGTATCTTTGAAATTT
TCGATAAACATGGTGTTATGAATAAGGAATTAGGTGCTAGACTTCGTAATCAAGTTTTGG
CTGTTGGTGGTTCACAACCAAGTAGTGAAACTATTGAAAACTTTTTAGGTAGCAAACCAA
ATGAAGCTGCTTTCTTAAAAACTATTGGTCTTTAAATAAACTGAAAACTATTTTTTTTAG
TAAAACAAAATAAAAAAAAGGTTAATATATATATATATTTAGAAATTTTATTGTTTTTAT
TTATTTTTCTCACTTAAAAAAAAATACATATATATTAAAAATTAATGTGATAAAACATAT
CATTTTTATTAGTATTTGGTAATATTTATTTAACCAAATTAATATTTAAATACGTAATTA
AAATTATTATAACCGATGAGTGAACCAAAGAATGATTCATTGCCTTAGTTATGAAGAATC
TTCATTGATTGATTGGATAATATCGAACCATCTAACATTCCAAGAATTACAAAAAAAACG
AAAAAATCAAGAAACGTAAAAATAAATAAATTAAAAGAAATAAAAGAATAAATAAAAAAA
AAGAAATAAAAGAAAAAAACTACTTTATCGTTTCTTTAATTTTAAAGAAAATTTAATTAT
TAATTTTTAAATTA
sequence update 1996.12.24
Translated Amino Acid sequence 
VKFTEVPAYQPWHEEVKMYSCVDTADSNKLLGHFYIDLFPREGKYSHAAVWPLIPGYERA
DGEKQYPVAAMLCNFTKPTPTTPSLLTHDEVVTFFHEFGHVMHNMSTKVHYSMFSGTSVE
RDFVECPSQLFEFWCWNKDVLVNKLSGHXKDHSKKLPTDLVERMIAAKNLNVAIFYLRQI
QLALFDNAIHSGNPANFTNTADPYHRI---

---SFGHLLGGYDAQYYSYLYSECFSASIFEIFDKHGVMNKELGARLRNQVLAVGGSQPS
SETIENFLGSKPNEAAFLKTIGL*in*klfflvkqnkkkvniyiyleillflfiflt*kk
ihiy*klm**nisfllvfgniyltklifkyvikiiitde*tke*fialvmknlh*lig*y
rti*hsknykknekikkrknk*ikrnkrinkkkeikeknyfivslilkki*llifkl
Translated Amino Acid sequence (All Frames) 
Frame A:
VKFTEVPAYQPWHEEVKMYSCVDTADSNKLLGHFYIDLFPREGKYSHAAVWPLIPGYERA
DGEKQYPVAAMLCNFTKPTPTTPSLLTHDEVVTFFHEFGHVMHNMSTKVHYSMFSGTSVE
RDFVECPSQLFEFWCWNKDVLVNKLSGHXKDHSKKLPTDLVERMIAAKNLNVAIFYLRQI
QLALFDNAIHSGNPANFTNTADPYHRI---

---viwsfirwl*csilfislf*mfqc*yl*nfr*twcye*girc*ts*ssfgcwwfttk
**ny*klfr*qtk*scflknywslnklktiffsktk*kkg*yiyifrnfivfiyfshlkk
ntyilkinvikhiifisiw*ylfnqini*irn*nyynr*vnqrmihclsyeesslidwii
snhltfqelqkkrknqet*k*in*kk*knk*kkrnkrkkllyrffnfkenliinf*i

Frame B:
lnsqryqptnhgmkklkcihvliqqilinc*visiliyshvrvnilmlqygh*flvmkep
mvksniq*lqcfvislnqlqplhhy*pmmrlslfsmnlvmlciiclpkfiiqclvvqv*k
eillnvqvnylnfgvgikmyssinylvtxkiiqrnyqli*lke*llqri*mlpsfifvkf
n*lslimlfivvilqtlpilliliiv---

---SFGHLLGGYDAQYYSYLYSECFSASIFEIFDKHGVMNKELGARLRNQVLAVGGSQPS
SETIENFLGSKPNEAAFLKTIGL*in*klfflvkqnkkkvniyiyleillflfiflt*kk
ihiy*klm**nisfllvfgniyltklifkyvikiiitde*tke*fialvmknlh*lig*y
rti*hsknykknekikkrknk*ikrnkrinkkkeikeknyfivslilkki*llifkl

Frame C:
*ihrgtslptma*rs*nvfmc*ysrf**ivrsfly*fipt*g*ifsccsmainswl*ksr
w*kaissscnal*fh*tnsnhsiiinp**gchffp*iwscya*yvyqsslfnv*wykcrk
rfc*msksii*ilvle*rctrq*iiwslxrsfkeitn*fs*kndcckefkcchllsssns
issl**cys*w*scklyqyc*slssy---

---hlviy*vvmmlniihifilnvsvlvslkfsinmvl*irn*vldfvikfwllvvhnqv
vkllktf*vanqmklls*kllvfk*tenyff**nkikkrliyiyi*kfycfylffslkkk
yiyikn*cdktyhfy*ylvifi*pn*ylnt*lkll*pmsepkndslp*l*rifid*ldni
epsnipritkktkksrnvkinklkeike*ikkkk*kkkttlsfl*f*rkfny*fln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AI18 (FC-AI18Q) /CSM/FC/FC-AI/FC-AI18Q.Seq.d/                     1693   0.0
VHB896 (VHB896Q) /CSM/VH/VHB8-D/VHB896Q.Seq.d/                        969   0.0
AHL452 (AHL452Q) /CSM/AH/AHL4-C/AHL452Q.Seq.d/                        854   0.0
VHQ168 (VHQ168Q) /CSM/VH/VHQ1-C/VHQ168Q.Seq.d/                        837   0.0
AFN130 (AFN130Q) /CSM/AF/AFN1-B/AFN130Q.Seq.d/                        831   0.0
VHP261 (VHP261Q) /CSM/VH/VHP2-C/VHP261Q.Seq.d/                        823   0.0
AHL632 (AHL632Q) /CSM/AH/AHL6-B/AHL632Q.Seq.d/                        813   0.0
AHH305 (AHH305Q) /CSM/AH/AHH3-A/AHH305Q.Seq.d/                        761   0.0
VHC134 (VHC134Q) /CSM/VH/VHC1-B/VHC134Q.Seq.d/                        753   0.0
AFK565 (AFK565Q) /CSM/AF/AFK5-C/AFK565Q.Seq.d/                        751   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

G64999|G64999.1 DH0129 Dictyostelium discoideum ( P.Dear ) Dictyostelium discoideum STS genomic 5', sequence tagged site.   648  0.0  1
BW116636|BW116636.1 Ciona intestinalis cDNA, clone:rcitb074g07, 3' end, single read.    50  1e-06  2
AK116574|AK116574.1 Ciona intestinalis cDNA, clone:ciad009k09, full insert sequence.    50  3e-06  2
BW075488|BW075488.1 Ciona intestinalis cDNA, clone:rcieg066b09, 3' end, single read.    48  3e-06  2
BW160852|BW160852.1 Ciona intestinalis cDNA, clone:rcigd040p09, 3' end, single read.    48  4e-06  2
AV849107|AV849107.1 Ciona intestinalis cDNA, clone:rciad09k09, 3' end, single read.    40  0.010  2
BG930452|BG930452.1 f24i-227 f24i Schistosoma mansoni cDNA, mRNA sequence.    38  0.026  2
AP001119|AP001119.1 Buchnera sp. APS genomic DNA, complete sequence, segment 2/2.    46  0.050  6
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    38  0.059  7
AC118804|AC118804.4 Rattus norvegicus clone CH230-131C23, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42  0.069  4
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013878_1(BC013878|pid:none) Homo sapiens thimet oligopeptidase...   189   3e-63
BC031722_1(BC031722|pid:none) Mus musculus thimet oligopeptidase...   189   4e-63
EU176234_1(EU176234|pid:none) Synthetic construct Homo sapiens c...   187   6e-63
BC000583_1(BC000583|pid:none) Homo sapiens thimet oligopeptidase...   187   6e-63
AK300552_1(AK300552|pid:none) Homo sapiens cDNA FLJ56247 complet...   187   8e-63
AF314187_1(AF314187|pid:none) Mus musculus thimet oligopeptidase...   188   1e-62
(P47788) RecName: Full=Thimet oligopeptidase;          EC=3.4.24...   189   1e-62
BC149983_1(BC149983|pid:none) Bos taurus thimet oligopeptidase 1...   187   3e-62
(Q1JPJ8) RecName: Full=Thimet oligopeptidase;          EC=3.4.24...   187   3e-62
(P24155) RecName: Full=Thimet oligopeptidase;          EC=3.4.24...   186   4e-62
protein update 2009. 4.13
PSORT 

 psg: 0.73  gvh: 0.27  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for FC-AI18 is cyt
5' end seq. ID FC-AI18F
5' end seq. 
>FC-AI18F.Seq
GTTAAATTCACAGAGGTACCAGCCTACCAACCATGGCATGAAGAAGTTAAAATGTATTCA
TGTGTTGATACAGCAGATTCTAATAAATTGTTAGGTCATTTCTATATTGATTTATTCCCA
CGTGAGGGTAAATATTCTCATGCTGCAGTATGGCCATTAATTCCTGGTTATGAAAGAGCC
GATGGTGAAAAGCAATATCCAGTAGCTGCAATGCTTTGTAATTTCACTAAACCAACTCCA
ACCACTCCATCATTATTAACCCATGATGAGGTTGTCACTTTTTTCCATGAATTTGGTCAT
GTTATGCATAATATGTCTACCAAAGTTCATTATTCAATGTTTAGTGGTACAAGTGTAGAA
AGAGATTTTGTTGAATGTCCAAGTCAATTATTTGAATTTTGGTGTTGGAATAAAGATGTA
CTCGTCAATAAATTATCTGGTCACTNNAAAGATCATTCAAAGAAATTACCAACTGATTTA
GTTGAAAGAATGATTGCTGCAAAGAATTTAAATGTTGCCATCTTTTATCTTCGTCAAATT
CAATTAGCTCTCTTTGATAATGCTATTCATAGTGGTAATCCTGCAAACTTTACCAATACT
GCTGATCCTTATCATCGTATT----------
Length of 5' end seq. 621
3' end seq. ID FC-AI18Z
3' end seq. 
>FC-AI18Z.Seq
----------GTCATTTGGTCATTTATTAGGTGGTTATGATGCTCAATATTATTCATATC
TTTATTCTGAATGTTTCAGTGCTAGTATCTTTGAAATTTTCGATAAACATGGTGTTATGA
ATAAGGAATTAGGTGCTAGACTTCGTAATCAAGTTTTGGCTGTTGGTGGTTCACAACCAA
GTAGTGAAACTATTGAAAACTTTTTAGGTAGCAAACCAAATGAAGCTGCTTTCTTAAAAA
CTATTGGTCTTTAAATAAACTGAAAACTATTTTTTTTAGTAAAACAAAATAAAAAAAAGG
TTAATATATATATATATTTAGAAATTTTATTGTTTTTATTTATTTTTCTCACTTAAAAAA
AAATACATATATATTAAAAATTAATGTGATAAAACATATCATTTTTATTAGTATTTGGTA
ATATTTATTTAACCAAATTAATATTTAAATACGTAATTAAAATTATTATAACCGATGAGT
GAACCAAAGAATGATTCATTGCCTTAGTTATGAAGAATCTTCATTGATTGATTGGATAAT
ATCGAACCATCTAACATTCCAAGAATTACAAAAAAAACGAAAAAATCAAGAAACGTAAAA
ATAAATAAATTAAAAGAAATAAAAGAATAAATAAAAAAAAAGAAATAAAAGAAAAAAACT
ACTTTATCGTTTCTTTAATTTTAAAGAAAATTTAATTATTAATTTTTAAATTA
Length of 3' end seq. 703
Connected seq. ID FC-AI18P
Connected seq. 
>FC-AI18P.Seq
GTTAAATTCACAGAGGTACCAGCCTACCAACCATGGCATGAAGAAGTTAAAATGTATTCA
TGTGTTGATACAGCAGATTCTAATAAATTGTTAGGTCATTTCTATATTGATTTATTCCCA
CGTGAGGGTAAATATTCTCATGCTGCAGTATGGCCATTAATTCCTGGTTATGAAAGAGCC
GATGGTGAAAAGCAATATCCAGTAGCTGCAATGCTTTGTAATTTCACTAAACCAACTCCA
ACCACTCCATCATTATTAACCCATGATGAGGTTGTCACTTTTTTCCATGAATTTGGTCAT
GTTATGCATAATATGTCTACCAAAGTTCATTATTCAATGTTTAGTGGTACAAGTGTAGAA
AGAGATTTTGTTGAATGTCCAAGTCAATTATTTGAATTTTGGTGTTGGAATAAAGATGTA
CTCGTCAATAAATTATCTGGTCACTNNAAAGATCATTCAAAGAAATTACCAACTGATTTA
GTTGAAAGAATGATTGCTGCAAAGAATTTAAATGTTGCCATCTTTTATCTTCGTCAAATT
CAATTAGCTCTCTTTGATAATGCTATTCATAGTGGTAATCCTGCAAACTTTACCAATACT
GCTGATCCTTATCATCGTATT----------GTCATTTGGTCATTTATTAGGTGGTTATG
ATGCTCAATATTATTCATATCTTTATTCTGAATGTTTCAGTGCTAGTATCTTTGAAATTT
TCGATAAACATGGTGTTATGAATAAGGAATTAGGTGCTAGACTTCGTAATCAAGTTTTGG
CTGTTGGTGGTTCACAACCAAGTAGTGAAACTATTGAAAACTTTTTAGGTAGCAAACCAA
ATGAAGCTGCTTTCTTAAAAACTATTGGTCTTTAAATAAACTGAAAACTATTTTTTTTAG
TAAAACAAAATAAAAAAAAGGTTAATATATATATATATTTAGAAATTTTATTGTTTTTAT
TTATTTTTCTCACTTAAAAAAAAATACATATATATTAAAAATTAATGTGATAAAACATAT
CATTTTTATTAGTATTTGGTAATATTTATTTAACCAAATTAATATTTAAATACGTAATTA
AAATTATTATAACCGATGAGTGAACCAAAGAATGATTCATTGCCTTAGTTATGAAGAATC
TTCATTGATTGATTGGATAATATCGAACCATCTAACATTCCAAGAATTACAAAAAAAACG
AAAAAATCAAGAAACGTAAAAATAAATAAATTAAAAGAAATAAAAGAATAAATAAAAAAA
AAGAAATAAAAGAAAAAAACTACTTTATCGTTTCTTTAATTTTAAAGAAAATTTAATTAT
TAATTTTTAAATTA
Length of connected seq. 1324
Full length Seq ID -
Full length Seq. -
Length of full length seq. -