FC-AI15
Library FC
(Link to library)
Clone ID FC-AI15
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15123-1
Original site URL
Representative seq. ID FC-AI15E
(Link to Original site)
Representative DNA sequence
>FC-AI15 (FC-AI15Q) /CSM/FC/FC-AI/FC-AI15Q.Seq.d/
AAAACATAGAGAATATATATATAAAAAATGATGATTAAATATATCACAATTGCTATTTTA
TTCATTGCTTCATTAGTCAAAGCTGATCTCCAATTCAGTTTATGTCCAACATGCGTCGAC
TTCATCAATAACGATATGGGTGATTTAGAAAAAATTATTTCAGGTGGTATTGCCACTTCA
TGTGGTGCCGTTTGTTCATTACTCCCAAATAATATTGAACAAGGTGCTTGCAATCTTTTA
TGTGATATCGTTGGTATTGATGAATTCCTTAAAGTTTTCAATAACATTGGTGAAGATGCT
GATCCAGTTTGGATTTGTGAAGAATTAACTGTTTGCCCAAAAAATCAAAATAGTAATGCC
ACTGTTTTAACTAGCGATGTTTCACCAGCTTCTGGTCCACACGGTACCACTTTCACCATT
GGTGTTGCTTACAAAGTTGAATCAACTCTCGGTACTGGTGAAGTTGCTGTTATGGTAACT
GACCCAACTGGTTCAAATGGTTTTGGTGATGCTCAATTAATTGTCAACACTCAACCAGGT
CAATACTCAACTAGTTTTTCATTCGCCGCCACCCCATCTGAAGATGAACAATTCCCAGCT
GGTGTTTACCAAGTTCAATTAATGATCTGTGAAGGTAGTTGTGGTGCCAAACACAGTGTC
ACCTTTAACTCTGTCTACGCTAACTTCACCGTCACCAGCGGTCCATCCGTTACTGGTCAA
ATGACTGGTACCGGTTCAGGTTCAGGTTCAGGTTCAGGCTCAAGCTCAGGCGCTGCTTAC
TTAAGATATTAAATTAATATATAATAAAATATTTGCGATTAAGTTTTTTCATTTTTTTTT
CCAACAAAAAAAAATA
sequence update 1996.12.24
Translated Amino Acid sequence
kt*riyi*KMMIKYITIAILFIASLVKADLQFSLCPTCVDFINNDMGDLEKIISGGIATS
CGAVCSLLPNNIEQGACNLLCDIVGIDEFLKVFNNIGEDADPVWICEELTVCPKNQNSNA
TVLTSDVSPASGPHGTTFTIGVAYKVESTLGTGEVAVMVTDPTGSNGFGDAQLIVNTQPG
QYSTSFSFAATPSEDEQFPAGVYQVQLMICEGSCGAKHSVTFNSVYANFTVTSGPSVTGQ
MTGTGSGSGSGSGSSSGAAYLRY*ini**nicd*vfsfffptkkn


Translated Amino Acid sequence (All Frames)
Frame A:
kt*riyi*KMMIKYITIAILFIASLVKADLQFSLCPTCVDFINNDMGDLEKIISGGIATS
CGAVCSLLPNNIEQGACNLLCDIVGIDEFLKVFNNIGEDADPVWICEELTVCPKNQNSNA
TVLTSDVSPASGPHGTTFTIGVAYKVESTLGTGEVAVMVTDPTGSNGFGDAQLIVNTQPG
QYSTSFSFAATPSEDEQFPAGVYQVQLMICEGSCGAKHSVTFNSVYANFTVTSGPSVTGQ
MTGTGSGSGSGSGSSSGAAYLRY*ini**nicd*vfsfffptkkn


Frame B:
khreyiykk**lnisqllfysllh*sklisnsvyvqhastssitiwvi*kklfqvvlplh
vvpfvhysqiilnkvlaifyvislvlmnslkfsitlvkmliqfgfvkn*lfaqkikivmp
lf*lamfhqllvhtvplsplvlltklnqlsvlvklllw*ltqlvqmvlvmln*lstlnqv
ntqlvfhsppphlkmnnsqlvftkfn**svkvvvvpntvspltlstltspspavhpllvk
*lvpvqvqvqvqaqaqallt*dikliynkifaikffhfffqqkki


Frame C:
nieniyikndd*iyhncyfihcfisqs*spiqfmsnmrrlhq*ryg*frknyfrwychfm
wcrlfitpk*y*trclqsfm*yrwy**ip*sfq*hw*rc*ssldl*rinclpkksk**ch
cfn*rcftsfwstryhfhhwcclqs*insryw*sccygn*pnwfkwfw*csincqhstrs
iln*ffirrhpi*r*tipswclpssindl*r*lwcqtqchl*lclr*lhrhqrsirywsn
dwyrfrfrfrfrlklrrcllkiln*yiikylrlsffiffsnkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AI15 (FC-AI15Q) /CSM/FC/FC-AI/FC-AI15Q.Seq.d/ 1631 0.0
FC-164 (FC-164Q) /CSM/CG/CG-FC/FC-164Q.Seq.d/ 1631 0.0
FC-AW20 (FC-AW20Q) /CSM/FC/FC-AW/FC-AW20Q.Seq.d/ 1330 0.0
FC-BJ13 (FC-BJ13Q) /CSM/FC/FC-BJ/FC-BJ13Q.Seq.d/ 1066 0.0
FC-BD17 (FC-BD17Q) /CSM/FC/FC-BD/FC-BD17Q.Seq.d/ 615 e-175
VSK169 (VSK169Q) /CSM/VS/VSK1-C/VSK169Q.Seq.d/ 60 6e-08
VSG609 (VSG609Q) /CSM/VS/VSG6-A/VSG609Q.Seq.d/ 60 6e-08
VSG284 (VSG284Q) /CSM/VS/VSG2-D/VSG284Q.Seq.d/ 60 6e-08
VSD364 (VSD364Q) /CSM/VS/VSD3-C/VSD364Q.Seq.d/ 60 6e-08
VSC419 (VSC419Q) /CSM/VS/VSC4-A/VSC419Q.Seq.d/ 60 6e-08

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB067573|AB067573.1 Dictyostelium discoideum mRNA for Countin2, complete cds. 1516 0.0 1
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 52 1e-09 12
AC092199|AC092199.7 Trypanosoma brucei chromosome VI clone RPCI93-28F21, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces. 52 1e-08 2
BX321872|BX321872.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-281K19. 70 5e-08 1
AC084046|AC084046.12 Trypanosoma brucei chromosome VI clone RPCI93-3D8, *** SEQUENCING IN PROGRESS ***, 43 unordered pieces. 52 5e-08 6
BX323809|BX323809.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 68 1e-07 7
BX324197|BX324197.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-142A12. 68 2e-07 1
AL954770|AL954770.9 Zebrafish DNA sequence from clone CH211-193A15. 68 2e-07 6
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 52 4e-07 12
BX322605|BX322605.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 48 5e-07 5
dna update 2003.11.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q8WSR7) RecName: Full=Countin-2; Flags: Precursor; &AB067573_1... 459 e-128
AF140780_1(AF140780|pid:none) Dictyostelium discoideum countin g... 191 3e-47
(Q86IV5) RecName: Full=Countin-1; Flags: Precursor; &AC116986_1... 187 3e-46
(Q86HV8) RecName: Full=Countin-3; Flags: Precursor; &AB211530_1... 163 6e-39
(Q554K2) RecName: Full=Countin-like protein; Flags: Precursor; 126 8e-28
AC116956_1(AC116956|pid:none) Dictyostelium discoideum chromosom... 126 8e-28
AB450918_2(AB450918|pid:none) Lactobacillus plantarum L137 plasm... 39 0.22
CP000360_4013(CP000360|pid:none) Acidobacteria bacterium Ellin34... 38 0.38
BA000045_460(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D... 36 1.9
BC140859_1(BC140859|pid:none) Homo sapiens zinc finger protein 2... 35 2.4
protein update 2009. 7. 2
PSORT

psg: 0.98 gvh: 0.52 alm: 0.26 top: 0.27 tms: 0.07 mit: 0.37 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
16.0 %: mitochondrial
16.0 %: nuclear
16.0 %: cytoplasmic
12.0 %: Golgi
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for FC-AI15 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AI15E
Full length Seq.
>FC-AI15E.Seq
AAAACATAGAGAATATATATATAAAAAATGATGATTAAATATATCACAATTGCTATTTTA
TTCATTGCTTCATTAGTCAAAGCTGATCTCCAATTCAGTTTATGTCCAACATGCGTCGAC
TTCATCAATAACGATATGGGTGATTTAGAAAAAATTATTTCAGGTGGTATTGCCACTTCA
TGTGGTGCCGTTTGTTCATTACTCCCAAATAATATTGAACAAGGTGCTTGCAATCTTTTA
TGTGATATCGTTGGTATTGATGAATTCCTTAAAGTTTTCAATAACATTGGTGAAGATGCT
GATCCAGTTTGGATTTGTGAAGAATTAACTGTTTGCCCAAAAAATCAAAATAGTAATGCC
ACTGTTTTAACTAGCGATGTTTCACCAGCTTCTGGTCCACACGGTACCACTTTCACCATT
GGTGTTGCTTACAAAGTTGAATCAACTCTCGGTACTGGTGAAGTTGCTGTTATGGTAACT
GACCCAACTGGTTCAAATGGTTTTGGTGATGCTCAATTAATTGTCAACACTCAACCAGGT
CAATACTCAACTAGTTTTTCATTCGCCGCCACCCCATCTGAAGATGAACAATTCCCAGCT
GGTGTTTACCAAGTTCAATTAATGATCTGTGAAGGTAGTTGTGGTGCCAAACACAGTGTC
ACCTTTAACTCTGTCTACGCTAACTTCACCGTCACCAGCGGTCCATCCGTTACTGGTCAA
ATGACTGGTACCGGTTCAGGTTCAGGTTCAGGTTCAGGCTCAAGCTCAGGCGCTGCTTAC
TTAAGATATTAAATTAATATATAATAAAATATTTGCGATTAAGTTTTTTCATTTTTTTTT
CCAACAAAAAAAAATA
Length of full length seq. 856