>FC-AI14 (FC-AI14Q) /CSM/FC/FC-AI/FC-AI14Q.Seq.d/
XXXXXXXXXXTTCTCAAAGACCTCTGAAAGAGAACTCCACATTTATGATCCACGTGCTTT
CACCACCCCACTCTCTGCTCAAGTCGTCGATTCTGCCTCTGGTCTCTTAATGCCATTCTA
TGATGCTGACAATTCAATTTTATACCTTGCTGGTAAAGGTGATGGTAACATCAGATACTA
CGAATTGGTCGATGAATCACCATACATTCATTTCTTAAGTGAATTCAAATCTGCCACCCC
ACAAAGAGGTCTTTGCTTCTTACCAAAGAGATGTCTCAACACCTCTGAATGTGAAATCGC
TAGAGGTCTCAAAGTTACTCCATTCACCGTTGAACCAATCTCATTCCGTGTACCAAGAAA
ATCTGATATCTTCCAAGACGATATCTACCCAGATACCTACGCTGGTGAACCATCACTCAC
TGCCGAACAATGGGTTTCAGGTACCAATGCTGAACCAAAGACTGTTAGTTTAGCTGGTGG
TTTTGTCAAAAAAGCTTCAGCTGTTGAATTCAAACCAGTCGTTCAAGTTCAAGAAGGTCC
AAAGAATGAAAAAGAACTCCGTGAAGAATACGAAAAATTAAAGATTCGTGTTGCTTACTT
AGAATCTGAAATCGTTAAAAAGGATGCCAAAATCAAAGAACTCACCAACTAAATTAATAA
TTTTCATTCTTAAATTGTATT

---SKTSERELHIYDPRAFTTPLSAQVVDSASGLLMPFYDADNSILYLAGKGDGNIRYYE
LVDESPYIHFLSEFKSATPQRGLCFLPKRCLNTSECEIARGLKVTPFTVEPISFRVPRKS
DIFQDDIYPDTYAGEPSLTAEQWVSGTNAEPKTVSLAGGFVKKASAVEFKPVVQVQEGPK
NEKELREEYEKLKIRVAYLESEIVKKDAKIKELTN*innfhs*iv

Frame A:
---sqrplkenstfmihvlspphsllkssilplvs*chsmmltiqfytllvkvmvtsdtt
nwsmnhhtfis*vnsnlpphkevfasyqrdvstplnvkslevskllhsplnqshsvyqen
lissktistqiptlvnhhslpnngfqvpmlnqrllv*lvvlskklqllnsnqsfkfkkvq
rmkknsvkntkn*rfvllt*nlkslkrmpksknsptkliifilkly


Frame B:
---lkdl*krtphl*stcfhhptlcssrrfclwslnail*c*qfnfipcw*r*w*hqilr
igr*itihsflk*iqichptkrsllltkemsqhl*m*nr*rsqsysihr*tnlipctkki
*ylprrylprylrw*tithcrtmgfryqc*tkdc*fswwfcqksfsc*iqtsrsssrrsk
e*krtp*rirkikdsccllri*nr*kgcqnqrthqln**fsflnci


Frame C:
---SKTSERELHIYDPRAFTTPLSAQVVDSASGLLMPFYDADNSILYLAGKGDGNIRYYE
LVDESPYIHFLSEFKSATPQRGLCFLPKRCLNTSECEIARGLKVTPFTVEPISFRVPRKS
DIFQDDIYPDTYAGEPSLTAEQWVSGTNAEPKTVSLAGGFVKKASAVEFKPVVQVQEGPK
NEKELREEYEKLKIRVAYLESEIVKKDAKIKELTN*innfhs*iv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH850 (SLH850Q) /CSM/SL/SLH8-C/SLH850Q.Seq.d/                       1330   0.0
SLG620 (SLG620Q) /CSM/SL/SLG6-A/SLG620Q.Seq.d/                       1330   0.0
SLG148 (SLG148Q) /CSM/SL/SLG1-B/SLG148Q.Seq.d/                       1330   0.0
SLE542 (SLE542Q) /CSM/SL/SLE5-B/SLE542Q.Seq.d/                       1330   0.0
SLA132 (SLA132Q) /CSM/SL/SLA1-B/SLA132Q.Seq.d/                       1330   0.0
FC-AI14 (FC-AI14Q) /CSM/FC/FC-AI/FC-AI14Q.Seq.d/                     1330   0.0
AFE648 (AFE648Q) /CSM/AF/AFE6-B/AFE648Q.Seq.d/                       1320   0.0
SFF787 (SFF787Q) /CSM/SF/SFF7-D/SFF787Q.Seq.d/                       1318   0.0
CFC402 (CFC402Q) /CSM/CF/CFC4-A/CFC402Q.Seq.d/                       1318   0.0
AFM241 (AFM241Q) /CSM/AF/AFM2-B/AFM241Q.Seq.d/                       1318   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X61480|X61480.1 D.discoideum mRNA for coronin.                  1322  0.0  1
CB928919|CB928919.1 ABA1_38_B07.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor cDNA clone ABA1_38_B07_A012 3', mRNA sequence.    68  1e-13  3
CD210549|CD210549.1 HS1_48_H10.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_48_H10_A012 3', mRNA sequence.    68  2e-13  3
CD235972|CD235972.1 SS1_25_F03.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_25_F03_A012 3', mRNA sequence.    64  1e-09  3
AV803042|AV803042.1 Arabidopsis thaliana cDNA clone:RAFL09-34-C08, 3'-end.    52  1e-04  2
BH162152|BH162152.1 ENTTF04TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    56  6e-04  1
AL428709|AL428709.1 clone BA0AB027D02 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    40  0.003  2
AX595430|AX595430.1 Sequence 1084 from Patent EP1258494.          40  0.097  2
AL391258|AL391258.10 Human DNA sequence from clone RP11-156A19 on chromosome 1q31.1-31.3.    38  0.49  3
AV808246|AV808246.1 Arabidopsis thaliana cDNA clone:RAFL09-53-N18, 3'-end.    46  0.55  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S18663(S18663) coronin - slime mold (Dictyostelium discoideum)  ...   392   e-108
AY525781_1(AY525781|pid:none) Acanthamoeba healyi coronin mRNA, ...   207   2e-52
(Q6QEF8) RecName: Full=Coronin-6;                                     188   1e-46
AF140359_1(AF140359|pid:none) Rattus norvegicus coronin relative...   186   4e-46
(Q920J3) RecName: Full=Coronin-6;  &BC098656_1(BC098656|pid:none)     186   4e-46
AK096431_1(AK096431|pid:none) Homo sapiens cDNA FLJ39112 fis, cl...   186   5e-46
(Q920M5) RecName: Full=Coronin-6; AltName: Full=Coronin-like pro...   186   5e-46
AB070895_1(AB070895|pid:none) Mus musculus Coro6 mRNA for coroni...   185   1e-45
AL607072_3(AL607072|pid:none) Mouse DNA sequence from clone RP23...   185   1e-45
BC160550_1(BC160550|pid:none) Xenopus tropicalis cDNA clone MGC:...   182   1e-44

 psg: 0.57  gvh: 0.46  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for FC-AI14 is cyt

>FC-AI14Z.Seq
----------TTCTCAAAGACCTCTGAAAGAGAACTCCACATTTATGATCCACGTGCTTT
CACCACCCCACTCTCTGCTCAAGTCGTCGATTCTGCCTCTGGTCTCTTAATGCCATTCTA
TGATGCTGACAATTCAATTTTATACCTTGCTGGTAAAGGTGATGGTAACATCAGATACTA
CGAATTGGTCGATGAATCACCATACATTCATTTCTTAAGTGAATTCAAATCTGCCACCCC
ACAAAGAGGTCTTTGCTTCTTACCAAAGAGATGTCTCAACACCTCTGAATGTGAAATCGC
TAGAGGTCTCAAAGTTACTCCATTCACCGTTGAACCAATCTCATTCCGTGTACCAAGAAA
ATCTGATATCTTCCAAGACGATATCTACCCAGATACCTACGCTGGTGAACCATCACTCAC
TGCCGAACAATGGGTTTCAGGTACCAATGCTGAACCAAAGACTGTTAGTTTAGCTGGTGG
TTTTGTCAAAAAAGCTTCAGCTGTTGAATTCAAACCAGTCGTTCAAGTTCAAGAAGGTCC
AAAGAATGAAAAAGAACTCCGTGAAGAATACGAAAAATTAAAGATTCGTGTTGCTTACTT
AGAATCTGAAATCGTTAAAAAGGATGCCAAAATCAAAGAACTCACCAACTAAATTAATAA
TTTTCATTCTTAAATTGTATT