>FC-AI13 (FC-AI13Q) /CSM/FC/FC-AI/FC-AI13Q.Seq.d/
ATTTTTACAACTATTGCAAATATCTCGGTGGTCAAACTGAATTGATCATGAGTGATATTT
TAAAGTTTGAAGCAGATCGTAGATCAATCAATATCACAATCAATAGTTTTGGTGCAACTG
AACTCTCAAAGGATGATCGTGAAAAACTTTACCCATCCTTAGGTCTTTTATACCCAGAAG
GTACTAGCAAACTTGGTAAAGCTGAAGACGTTGATCAAGTTAGAGGTATCCTCGAAGTTT
ACTCTACCTATCGTAATTTCTTCTCTGATGGTGTCAACAACGAGAAATCATTGGAAGACT
CATTCTTTGAACATGAAGTTCACTTAAATCGTATGGCTTTTGAAGATCAATATGGTTATG
GTGTCTTTTACGCTTACATTAAATTAAGAGAACAAGAAATTAGAAATATAGTTTGGATTG
CTGAATGTATTAGTCAAAATATGAAACAAAAAATGAATCAATACATTCCAATCTTTTAAA
AAAATAACTATATCTAATTACCAAAAAXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

ifttianisvvkln*s*vif*slkqivdqsisqsivlvqlnsqrmivknfthp*vfytqk
vlanlvklktliklevsskftlpivisslmvsttrnhwkthslnmkft*ivwllkinmvm
vsftltln*enkklei*fgllnvlvki*nkk*INTFQSFKKITISNYQK---

---KKKKKKKKKKKKKKKKKKKKKKKK

Frame A:
ifttianisvvkln*s*vif*slkqivdqsisqsivlvqlnsqrmivknfthp*vfytqk
vlanlvklktliklevsskftlpivisslmvsttrnhwkthslnmkft*ivwllkinmvm
vsftltln*enkklei*fgllnvlvki*nkk*INTFQSFKKITISNYQK---

---KKKKKKKKKKKKKKKKKKKKKKKK

Frame B:
flqllqisrwsn*idhe*yfkv*srs*inqyhnq*fwcn*tlkg*s*ktlpilrsfiprr
y*qtw*s*rr*ss*ryprsllyls*fll*wcqqreiigrlil*t*sslksygf*rsiwlw
cllrlh*ikrtrn*kysldc*my*skyetknesihsnllkk*lylitk---

---KKKKKKKKKKKKKKKKKKKKKKKK

Frame C:
fynyckylggqtelimsdilkfeadrrsinitinsfgatelskddreklypslgllypeg
tsklgkaedvdqvrgilevystyrnffsdgvnneksledsffehevhlnrmafedqygyg
vfyayiklreqeirnivwiaecisqnmkqkmnqyipif*knnyi*lpk---

---kkkkkkkkkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AI13 (FC-AI13Q) /CSM/FC/FC-AI/FC-AI13Q.Seq.d/                      963   0.0
VSA730 (VSA730Q) /CSM/VS/VSA7-B/VSA730Q.Seq.d/                        950   0.0
SSM519 (SSM519Q) /CSM/SS/SSM5-A/SSM519Q.Seq.d/                        950   0.0
SSK753 (SSK753Q) /CSM/SS/SSK7-C/SSK753Q.Seq.d/                        950   0.0
SSK721 (SSK721Q) /CSM/SS/SSK7-A/SSK721Q.Seq.d/                        950   0.0
SSI366 (SSI366Q) /CSM/SS/SSI3-C/SSI366Q.Seq.d/                        950   0.0
SSI279 (SSI279Q) /CSM/SS/SSI2-D/SSI279Q.Seq.d/                        950   0.0
SSG826 (SSG826Q) /CSM/SS/SSG8-B/SSG826Q.Seq.d/                        950   0.0
SSG660 (SSG660Q) /CSM/SS/SSG6-C/SSG660Q.Seq.d/                        950   0.0
SSF396 (SSF396Q) /CSM/SS/SSF3-D/SSF396Q.Seq.d/                        950   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   991  0.0  1
U13150|U13150.1 Dictyostelium discoideum vacuolar ATPase subunit DVA41 mRNA, complete cds.   975  0.0  1
BE029219|BE029219.1 kp26d05.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:VATX_BOVIN P12953 VACUOLAR ATP SYNTHASE SUBUNIT AC39 ;, mRNA sequence.    76  5e-14  2
BU776849|BU776849.1 SJEDDD08 SJE Schistosoma japonicum cDNA, mRNA sequence.    54  0.002  1
AI067312|AI067312.1 EST208990 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNAS44 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence.    54  0.002  1
AI067329|AI067329.1 EST209007 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNAS63 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence.    54  0.002  1
BU768904|BU768904.1 SJEBZB10 SJE Schistosoma japonicum cDNA, mRNA sequence.    54  0.002  1
AI067953|AI067953.1 EST209642 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCH20 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence.    54  0.002  1
AI067936|AI067936.1 EST209624 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCG92 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence.    54  0.002  1
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    44  0.12  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A55016(A55016) lysosomal membrane protein DVA41 - slime mold (Di...   323   2e-87
(P54641) RecName: Full=V-type proton ATPase subunit d;          ...   323   2e-87
(Q5ZHL0) RecName: Full=V-type proton ATPase subunit d 2;        ...   193   3e-48
(Q9W4P5) RecName: Full=V-type proton ATPase subunit d 1;        ...   190   2e-47
AC006611_1(AC006611|pid:none) Caenorhabditis elegans cosmid C30F...   187   2e-46
BC042233_1(BC042233|pid:none) Xenopus laevis ATPase, H+ transpor...   186   3e-46
DQ443281_1(DQ443281|pid:none) Bombyx mori H+ transporting ATPase...   185   7e-46
BC125665_1(BC125665|pid:none) Xenopus tropicalis ATPase, H+ tran...   185   9e-46
DQ440373_1(DQ440373|pid:none) Aedes aegypti clone AET-492 vacuol...   184   1e-45
(P51863) RecName: Full=V-type proton ATPase subunit d 1;        ...   184   1e-45

 psg: 0.65  gvh: 0.14  alm: 0.70  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 2.55  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for FC-AI13 is nuc

>FC-AI13F.Seq
ATTTTTACAACTATTGCAAATATCTCGGTGGTCAAACTGAATTGATCATGAGTGATATTT
TAAAGTTTGAAGCAGATCGTAGATCAATCAATATCACAATCAATAGTTTTGGTGCAACTG
AACTCTCAAAGGATGATCGTGAAAAACTTTACCCATCCTTAGGTCTTTTATACCCAGAAG
GTACTAGCAAACTTGGTAAAGCTGAAGACGTTGATCAAGTTAGAGGTATCCTCGAAGTTT
ACTCTACCTATCGTAATTTCTTCTCTGATGGTGTCAACAACGAGAAATCATTGGAAGACT
CATTCTTTGAACATGAAGTTCACTTAAATCGTATGGCTTTTGAAGATCAATATGGTTATG
GTGTCTTTTACGCTTACATTAAATTAAGAGAACAAGAAATTAGAAATATAGTTTGGATTG
CTGAATGTATTAGTCAAAATATGAAACAAAAAATGAATCAATACATTCCAATCTTTTAAA
AAAATAACTATATCTAATTACCAAAAA----------