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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AI11
Library FC
(Link to library)
Clone ID FC-AI11
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15122-1
Original site URL
Representative seq. ID FC-AI11E
(Link to Original site)
Representative DNA sequence 
>FC-AI11 (FC-AI11Q) /CSM/FC/FC-AI/FC-AI11Q.Seq.d/
AGAGATTATAAAGAAAAAGAGAGAAAGAAAGAGAGAGAGTATTAGTAGGGGTATAAGATC
ACCACCAAATAAATGGACAAAGGAAGAGAGTCAAAATCTAATTAAATTAGTAACAGAGAA
TGGTGATAAACAATGGAAAAAGATAGCTACCAAATTGGGTGGTGGTAAAACTGGTGCTCA
ATGCGCTCAACATTGGAAACGTGTTCTCTCGCCAGAGATTAAAAAAGGCTCTTGGGACGA
AGCTGAAGAGGAGCTCTTGTTTCAATTGGTTGATAAACATGGTCAAAGTTGGAAAAATGT
TGCAATTGAAATTAAAACTCGTACAGATATTCAATGTCGTTATCAATACTTTAAAGCCAT
AATGTCAAGACAAACTGAATGGAATCAATTGGAAGATGATATCTTGACTAAAAAAATTAA
ATTAATGACCCAAAATAATGAAAAAATCTCTTTTCAACAAGTTTCTAAACATTTAGCAAG
AGCTAAAACTACCAAAATTCCAAGAACTGCTTTAGAATGCAAATCAAGATGGTCACAATT
AAATTCAACAAATGTTAATAATAATAATAATAATAATAATAATTCAATAACGACATCATC
ATCAAATACAAATCAACAACAACAATCGACAATGGTAACACCAACTTCTTCTCCTTTATC
ATCTCCAATTCCAATGTCAACTCCAATAATTAATAATTCAATGCCACAACAACAAGTTCA
ACAAATTCAACAACAACAAATTTCAATCCAACCATATCCTCAATCATTTATTCAAGAAAC
TCAAGGATTTTATAGAGGTAACGATCAAATGCAATACCATATTCAAAATCAAACAATTCC
ACAATATCATCACCAACATAATAACAATCCACTTTTAATGCTGTAAAATTATTACTATAA
AACCACCATTGTGACAATAAGTAAAATAAATATTTCAAAAACATTTTTTTAATTTTGTGG
TATTATTATCCATCAATTTTATAAATTAAAGAAATAATAAAAAATTTAATTTAAACATTT
AAAAAATAAATAAAAAAAAA
sequence update 1996.12.24
Translated Amino Acid sequence 
EIIKKKRERKRESISRGIRSPPNKWTKEESQNLIKLVTENGDKQWKKIATKLGGGKTGAQ
CAQHWKRVLSPEIKKGSWDEAEEELLFQLVDKHGQSWKNVAIEIKTRTDIQCRYQYFKAI
MSRQTEWNQLEDDILTKKIKLMTQNNEKISFQQVSKHLARAKTTKIPRTALECKSRWSQL
NSTNVNNNNNNNNNSITTSSSNTNQQQQSTMVTPTSSPLSSPIPMSTPIINNSMPQQQVQ
QIQQQQISIQPYPQSFIQETQGFYRGNDQMQYHIQNQTIPQYHHQHNNNPLLML*nyyyk
ttivtiskinisktff*fcgiiihqfyklkk**ki*fkhlknk*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
rdykekerkkerey**gykittk*mdkgresksn*isnrew**tmekdsyqigww*nwcs
mrstletcslard*krllgrs*rgalvsig**twsklekccn*n*nsyrysmslsil*sh
nvktn*mesigr*yld*kn*indpk**knlfstsf*tfsks*nyqnskncfrmqikmvti
kfnkc*********fnndiiikykstttidngntnffsfiisnsnvnsnn**fnatttss
tnstttnfnptissiiysrnsril*r*rsnaipysksnnstisspt**qstfnavklll*
nhhcdnk*nkyfkniflilwyyypsil*ikeiiknli*tfkk*ikk


Frame B:
EIIKKKRERKRESISRGIRSPPNKWTKEESQNLIKLVTENGDKQWKKIATKLGGGKTGAQ
CAQHWKRVLSPEIKKGSWDEAEEELLFQLVDKHGQSWKNVAIEIKTRTDIQCRYQYFKAI
MSRQTEWNQLEDDILTKKIKLMTQNNEKISFQQVSKHLARAKTTKIPRTALECKSRWSQL
NSTNVNNNNNNNNNSITTSSSNTNQQQQSTMVTPTSSPLSSPIPMSTPIINNSMPQQQVQ
QIQQQQISIQPYPQSFIQETQGFYRGNDQMQYHIQNQTIPQYHHQHNNNPLLML*nyyyk
ttivtiskinisktff*fcgiiihqfyklkk**ki*fkhlknk*kk


Frame C:
rl*rkrekerervlvgv*dhhqingqrkrvki*ln**qrmvinngkr*lpnwvvvklvln
alnignvfsrqrlkkalgtklkrsscfnwlinmvkvgkmlqlklklvqifnvvintlkp*
cqdklnginwkmis*lkkln**pkimkkslfnkflni*qelklpkfqell*nanqdghn*
iqqmliiiiiiiiiq*rhhhqiqinnnnrqw*hqllllyhlqfqcqlq*liiqchnnkfn
kfnnnkfqsnhilnhlfkklkdfievtikcntifkikqfhniitniitihf*cckiitik
ppl*q*vk*ifqkhffnfvvllsinfin*rnnkkfnlni*kinkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AI11 (FC-AI11Q) /CSM/FC/FC-AI/FC-AI11Q.Seq.d/                      731   0.0
AFL301 (AFL301Q) /CSM/AF/AFL3-A/AFL301Q.Seq.d/                        204   2e-51
AFD188 (AFD188Q) /CSM/AF/AFD1-D/AFD188Q.Seq.d/                        204   2e-51
AFD280 (AFD280Q) /CSM/AF/AFD2-D/AFD280Q.Seq.d/                        200   3e-50
SSI409 (SSI409Q) /CSM/SS/SSI4-A/SSI409Q.Seq.d/                        196   5e-49
SSB759 (SSB759Q) /CSM/SS/SSB7-C/SSB759Q.Seq.d/                        103   5e-21
VFB190 (VFB190Q) /CSM/VF/VFB1-D/VFB190Q.Seq.d/                         48   3e-04
AHQ566 (AHQ566Q) /CSM/AH/AHQ5-C/AHQ566Q.Seq.d/                         40   0.066
AHL488 (AHL488Q) /CSM/AH/AHL4-D/AHL488Q.Seq.d/                         40   0.066
AHE482 (AHE482Q) /CSM/AH/AHE4-D/AHE482Q.Seq.d/                         40   0.066
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ002383|AJ002383.1 Dictyostelium discoideum mybB gene.           731   0.0    3
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.   731   0.0    3
AF098507|AF098507.1 Dictyostelium discoideum myb protein mRNA, complete cds.   133   3e-52  4
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   4e-06  17
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    36   8e-06  13
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    48   3e-04  15
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    30   5e-04  14
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   5e-04  20
BX088530|BX088530.6 Zebrafish DNA sequence from clone DKEY-56F11 in linkage group 10.    44   0.001  8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.003  19
dna update 2003.11.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117080_8(AC117080|pid:none) Dictyostelium discoideum chromosom...   369   e-100
AJ002383_1(AJ002383|pid:none) Dictyostelium discoideum mybB gene.     369   e-100
(Q54TN2) RecName: Full=Myb-like protein C;                            232   2e-59
AF098507_1(AF098507|pid:none) Dictyostelium discoideum myb prote...   232   2e-59
(Q54CT1) RecName: Full=Myb-like protein N;                            229   9e-59
(Q55GK3) RecName: Full=Myb-like protein M;                            194   4e-48
CR382128_542(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    89   3e-16
(P01103) RecName: Full=Myb proto-oncogene protein; AltName: Full...    87   1e-15
BC096006_1(BC096006|pid:none) Xenopus tropicalis v-myb myeloblas...    87   1e-15
AJ606318_1(AJ606318|pid:none) Homo sapiens mRNA for v-myb myelob...    86   2e-15
protein update 2009. 7. 2
PSORT 

 psg: 0.50  gvh: 0.42  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for FC-AI11 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AI11E
Full length Seq. 
>FC-AI11E.Seq
AGAGATTATAAAGAAAAAGAGAGAAAGAAAGAGAGAGAGTATTAGTAGGGGTATAAGATC
ACCACCAAATAAATGGACAAAGGAAGAGAGTCAAAATCTAATTAAATTAGTAACAGAGAA
TGGTGATAAACAATGGAAAAAGATAGCTACCAAATTGGGTGGTGGTAAAACTGGTGCTCA
ATGCGCTCAACATTGGAAACGTGTTCTCTCGCCAGAGATTAAAAAAGGCTCTTGGGACGA
AGCTGAAGAGGAGCTCTTGTTTCAATTGGTTGATAAACATGGTCAAAGTTGGAAAAATGT
TGCAATTGAAATTAAAACTCGTACAGATATTCAATGTCGTTATCAATACTTTAAAGCCAT
AATGTCAAGACAAACTGAATGGAATCAATTGGAAGATGATATCTTGACTAAAAAAATTAA
ATTAATGACCCAAAATAATGAAAAAATCTCTTTTCAACAAGTTTCTAAACATTTAGCAAG
AGCTAAAACTACCAAAATTCCAAGAACTGCTTTAGAATGCAAATCAAGATGGTCACAATT
AAATTCAACAAATGTTAATAATAATAATAATAATAATAATAATTCAATAACGACATCATC
ATCAAATACAAATCAACAACAACAATCGACAATGGTAACACCAACTTCTTCTCCTTTATC
ATCTCCAATTCCAATGTCAACTCCAATAATTAATAATTCAATGCCACAACAACAAGTTCA
ACAAATTCAACAACAACAAATTTCAATCCAACCATATCCTCAATCATTTATTCAAGAAAC
TCAAGGATTTTATAGAGGTAACGATCAAATGCAATACCATATTCAAAATCAAACAATTCC
ACAATATCATCACCAACATAATAACAATCCACTTTTAATGCTGTAAAATTATTACTATAA
AACCACCATTGTGACAATAAGTAAAATAAATATTTCAAAAACATTTTTTTAATTTTGTGG
TATTATTATCCATCAATTTTATAAATTAAAGAAATAATAAAAAATTTAATTTAAACATTT
AAAAAATAAATAAAAAAAAA
Length of full length seq. 1040