FC-AI10
Library FC
(Link to library)
Clone ID FC-AI10
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16270-1
Original site URL
Representative seq. ID FC-AI10F
(Link to Original site)
Representative DNA sequence
>FC-AI10 (FC-AI10Q) /CSM/FC/FC-AI/FC-AI10Q.Seq.d/
GAGAAAGAAGAGAAAGTCTGACTACACCTCATTCTCAACCTACATCCACAAGTTATTGAA
ACAAATTACTCCACCAACCAATGCCAAGAGTAATGAAAAAGGTGATAGAAAATTCACTAT
CTCATCCAAAGCCATGTCTGTAATGAACTCCTTTGTCCACGATATCTTTGACAGAATCGC
CACCGAAGCTTCTGGTTTAGCCAAAAAGAAGAAGAGACAAACTTTACACTCAAGAGATAT
TCAAGTTGCCGTTCGTATCATTCTCACTGGTGAGTTAGCTANACATGCCATCTTACAAGG
TATGACTGCTGTCAACAAGTACAATCCCACTGAAGCAAAAACTAAATTGGTTCCAAATGA
ACTATATTCCTTACAAAAATATAGTTTCCAATTTTCTTTTTTTTTXXXXXXXXXXAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1996.12.24
Translated Amino Acid sequence
RKKRKSDYTSFSTYIHKLLKQITPPTNAKSNEKGDRKFTISSKAMSVMNSFVHDIFDRIA
TEASGLAKKKKRQTLHSRDIQVAVRIILTGELAXHAILQGMTAVNKYNPTEAKTKLVPNE
LYSLQKYSFQFSFF---

---KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
ekeekv*lhlilnlhpqvietnystnqcqe**kr**kihyliqshvcnellcpryl*qnr
hrsfwfsqkeeetnftlkrysscrsyhshw*vsxtchltrydccqqvqsh*skn*igsk*
tifltki*fpiffff---

---KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Frame B:
RKKRKSDYTSFSTYIHKLLKQITPPTNAKSNEKGDRKFTISSKAMSVMNSFVHDIFDRIA
TEASGLAKKKKRQTLHSRDIQVAVRIILTGELAXHAILQGMTAVNKYNPTEAKTKLVPNE
LYSLQKYSFQFSFF---

---KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Frame C:
erreslttphsqptstsy*nkllhqpmprvmkkvienslshpkpcl**tplstisltesp
pkllv*pkrrrdklytqeifklpfvsfslvs*lxmpsykv*llststiplkqklnwfqmn
yipyknivsnflff---

---KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AI10 (FC-AI10Q) /CSM/FC/FC-AI/FC-AI10Q.Seq.d/ 779 0.0
VSJ146 (VSJ146Q) /CSM/VS/VSJ1-B/VSJ146Q.Seq.d/ 749 0.0
VSH880 (VSH880Q) /CSM/VS/VSH8-D/VSH880Q.Seq.d/ 749 0.0
VSH334 (VSH334Q) /CSM/VS/VSH3-B/VSH334Q.Seq.d/ 749 0.0
VSE878 (VSE878Q) /CSM/VS/VSE8-D/VSE878Q.Seq.d/ 749 0.0
VSE742 (VSE742Q) /CSM/VS/VSE7-B/VSE742Q.Seq.d/ 749 0.0
VSE410 (VSE410Q) /CSM/VS/VSE4-A/VSE410Q.Seq.d/ 749 0.0
VSC132 (VSC132Q) /CSM/VS/VSC1-B/VSC132Q.Seq.d/ 749 0.0
VSB637 (VSB637Q) /CSM/VS/VSB6-B/VSB637Q.Seq.d/ 749 0.0
VSB542 (VSB542Q) /CSM/VS/VSB5-B/VSB542Q.Seq.d/ 749 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL395901|AL395901.1 T3 end of clone AR0AA026H03 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 60 3e-05 1
AJ494852|AJ494852.1 Oikopleura dioica partial H2A.4 gene for histone H2A.4. 54 0.002 1
AL418813|AL418813.1 T7 end of clone AX0AA034F12 of library AX0AA from strain CBS 7064 of Pichia farinosa. 54 0.002 1
AL440801|AL440801.1 T7 end of clone BD0AA014H06 of library BD0AA from strain CBS 94 of Candida tropicalis. 52 0.007 1
AC008493|AC008493.5 Homo sapiens chromosome 5 clone CTC-427G18, complete sequence. 48 0.11 1
C56389|C56389.1 C.elegans cDNA clone yk261a8 : 3' end, single read. 48 0.11 1
Z83245|Z83245.4 Caenorhabditis elegans cosmid ZK131. 48 0.11 1
BI743954|BI743954.1 kx54a04.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9U373 Q9U373 T10C6.11 PROTEIN. [1] ;, mRNA sequence. 48 0.11 1
AL115219|AL115219.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 48 0.11 1
AL114064|AL114064.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 48 0.11 1
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q27442) RecName: Full=Histone H2B; &FB334594_1(FB334594|pid:no... 107 2e-22
AB435638_1(AB435638|pid:none) Oryzias latipes H2B mRNA for histo... 107 2e-22
(Q75VN4) RecName: Full=Histone H2B; &AB124798_1(AB124798|pid:no... 105 5e-22
AJ238321_1(AJ238321|pid:none) Asellus aquaticus 5S rRNA gene, hi... 105 7e-22
HSXLB1(B92918;A90626;A02608;A24510)histone H2B.1 - African clawe... 105 7e-22
FB334596_1(FB334596|pid:none) Sequence 2122 from Patent WO200711... 105 7e-22
EZ000286_1(EZ000286|pid:none) TSA: Amblyomma americanum Contig39... 105 7e-22
CR760086_1(CR760086|pid:none) Xenopus tropicalis finished cDNA, ... 105 7e-22
S33220(S33220) histone H2B.A - African clawed frog &X71389_1(X7... 105 7e-22
(P19374) RecName: Full=Histone H2B; &S11313(S11313) &X53330_2(X... 105 9e-22
protein update 2009. 4.13
PSORT

psg: 0.85 gvh: 0.47 alm: 0.36 top: 0.30 tms: 0.00 mit: 0.35 mip: 0.02
nuc: 4.28 erl: 0.00 erm: 1.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: nuclear
20.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for FC-AI10 is nuc

5' end seq. ID FC-AI10F
5' end seq.
>FC-AI10F.Seq
GAGAAAGAAGAGAAAGTCTGACTACACCTCATTCTCAACCTACATCCACAAGTTATTGAA
ACAAATTACTCCACCAACCAATGCCAAGAGTAATGAAAAAGGTGATAGAAAATTCACTAT
CTCATCCAAAGCCATGTCTGTAATGAACTCCTTTGTCCACGATATCTTTGACAGAATCGC
CACCGAAGCTTCTGGTTTAGCCAAAAAGAAGAAGAGACAAACTTTACACTCAAGAGATAT
TCAAGTTGCCGTTCGTATCATTCTCACTGGTGAGTTAGCTANACATGCCATCTTACAAGG
TATGACTGCTGTCAACAAGTACAATCCCACTGAAGCAAAAACTAAATTGGTTCCAAATGA
ACTATATTCCTTACAAAAATATAGTTTCCAATTTTCTTTTTTTTT----------
Length of 5' end seq. 405
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -