>FC-AI09 (FC-AI09Q) /CSM/FC/FC-AI/FC-AI09Q.Seq.d/
XXXXXXXXXXGTGGGACGTAGAAAGTACCAGAGTTTTTGGCGATTCTGTTTAAACGGATG
GCTTCACGTTCGGTTTTGTGGTATTAACGGTGTCTCACCAAAGCCAAGAAAGGTCTTAAA
GCTCCTCAGACTCTTACAATTAAACAATGGTGTCTTTGTCAAATTAAACAAAGCTTCAAT
CAACATGCTCAAACTTGTTGAACCATACGTTGCTTATGGTTTCCCAAATCTCAAATCAAT
CAAAGAATTAATCTACAAGAGAGGTCACTTAAAGATTGACGGTCAAAGAATCCCATTAAC
CTCTAACGATATGGTTGAAAAACAACTCGGCAAATTCGGTATCATTTGCGTTGAAGATAT
CATCCACGAAATCACCACTTGCGGTAAACACTTCAAACAAGTTAACAACTCTTTATGGCC
ATTCAAATTAAACTGTCCAAGAGGTGGTTTCAACATGAAGAAAACTCCATTCCTCCAAGG
TGGTGATGCTGGTAACCGTGAACACTTAATCAACAACCTCATCCACAGAATGAACTAAAT
TGATAAAATAAATATTAATTTTTTATAAAATAAAAAATAACAAAAAAAAAAAAAAAAAAA
A

---GRRKYQSFWRFCLNGWLHVRFCGINGVSPKPRKVLKLLRLLQLNNGVFVKLNKASIN
MLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEDII
HEITTCGKHFKQVNNSLWPFKLNCPRGGFNMKKTPFLQGGDAGNREHLINNLIHRMN*id
kininfl*nkk*qkkkkkk

Frame A:
---wdvestrvfgdsv*tdgftfgfvvltvshqsqers*sssdsyn*tmvslsn*tklqs
tcsnllnhtllmvsqisnqskn*strevt*rltvkesh*pltiwlknnsansvsfalkis
stksplavntsnklttlyghsn*tvqevvst*rklhsskvvmlvtvnt*sttsste*tkl
ik*ilifykiknnkkkkkk


Frame B:
---gt*kvpeflailfkrmasrsvlwy*rcltkakkglkapqtltikqwclcqikqsfnq
haqtc*tirclwfpksqinqrinlqerslkd*rsknpinl*ryg*kttrqiryhlr*ryh
prnhhlr*tlqts*qlfmaiqiklskrwfqheensipprw*cw*p*tlnqqphpqneln*
*nky*ffik*kitkkkkkk


Frame C:
---GRRKYQSFWRFCLNGWLHVRFCGINGVSPKPRKVLKLLRLLQLNNGVFVKLNKASIN
MLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEDII
HEITTCGKHFKQVNNSLWPFKLNCPRGGFNMKKTPFLQGGDAGNREHLINNLIHRMN*id
kininfl*nkk*qkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AI09 (FC-AI09Q) /CSM/FC/FC-AI/FC-AI09Q.Seq.d/                     1039   0.0
VSE202 (VSE202Q) /CSM/VS/VSE2-A/VSE202Q.Seq.d/                        894   0.0
VSB764 (VSB764Q) /CSM/VS/VSB7-C/VSB764Q.Seq.d/                        894   0.0
FC-AX16 (FC-AX16Q) /CSM/FC/FC-AX/FC-AX16Q.Seq.d/                      894   0.0
FC-AN05 (FC-AN05Q) /CSM/FC/FC-AN/FC-AN05Q.Seq.d/                      894   0.0
FC-AK21 (FC-AK21Q) /CSM/FC/FC-AK/FC-AK21Q.Seq.d/                      894   0.0
VSC626 (VSC626Q) /CSM/VS/VSC6-B/VSC626Q.Seq.d/                        886   0.0
VSJ545 (VSJ545Q) /CSM/VS/VSJ5-B/VSJ545Q.Seq.d/                        872   0.0
VSH403 (VSH403Q) /CSM/VS/VSH4-A/VSH403Q.Seq.d/                        872   0.0
VSD652 (VSD652Q) /CSM/VS/VSD6-C/VSD652Q.Seq.d/                        872   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.   896  0.0  2
X14909|X14909.1 Dictyolstelium discoideum mRNA for ribosomal protein L7.   896  0.0  1
BZ304008|BZ304008.1 KD2711.q1 Kluyveromyces delphensis Random Genomic Library Kluyveromyces delphensis genomic clone KD2711, DNA sequence.    42  8e-16  5
E24641|E24641.1 Antigen protein and nucleic acid encoding the same.    44  1e-13  4
X62627|X62627.1 S.cerevisiae YL8A gene for ribosomal protein YL8.    46  7e-13  5
Z72598|Z72598.1 S.cerevisiae chromosome VII reading frame ORF YGL076c.    46  2e-12  5
T37197|T37197.1 EST102277 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    46  2e-11  4
AL419194|AL419194.1 T3 end of clone AX0AA037E07 of library AX0AA from strain CBS 7064 of Pichia farinosa.    40  4e-11  5
D25232|D25232.1 Yeast YL8B gene for ribosomal protein YL8, complete cds (exon1, exon2, exon3).    46  9e-11  4
Z73554|Z73554.1 S.cerevisiae chromosome XVI reading frame ORF YPL198w.    46  1e-10  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P11874) RecName: Full=60S ribosomal protein L7;  &R5DO7(S04849;...   283   2e-75
AC114263_33(AC114263|pid:none) Dictyostelium discoideum chromoso...   283   2e-75
BT043873_1(BT043873|pid:none) Salmo salar clone HM4_1876 ribosom...   199   4e-50
AF175983_1(AF175983|pid:none) Rana sylvatica ribosomal protein L...   199   4e-50
BT045943_1(BT045943|pid:none) Salmo salar clone ssal-rgf-537-123...   199   6e-50
EF408834_1(EF408834|pid:none) Poecilia reticulata ribosomal prot...   198   8e-50
BC107515_1(BC107515|pid:none) Danio rerio ribosomal protein L7, ...   197   2e-49
BC154759_1(BC154759|pid:none) Danio rerio ribosomal protein L7, ...   197   2e-49
AY561515_1(AY561515|pid:none) Danio rerio ribosomal protein L7 (...   197   2e-49
(P05426) RecName: Full=60S ribosomal protein L7;  &R5RTL7(JC4230...   196   4e-49

 psg: 0.82  gvh: 0.50  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.47  mip: 0.07
 nuc: 0.09  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for FC-AI09 is mit

>FC-AI09Z.Seq
----------GTGGGACGTAGAAAGTACCAGAGTTTTTGGCGATTCTGTTTAAACGGATG
GCTTCACGTTCGGTTTTGTGGTATTAACGGTGTCTCACCAAAGCCAAGAAAGGTCTTAAA
GCTCCTCAGACTCTTACAATTAAACAATGGTGTCTTTGTCAAATTAAACAAAGCTTCAAT
CAACATGCTCAAACTTGTTGAACCATACGTTGCTTATGGTTTCCCAAATCTCAAATCAAT
CAAAGAATTAATCTACAAGAGAGGTCACTTAAAGATTGACGGTCAAAGAATCCCATTAAC
CTCTAACGATATGGTTGAAAAACAACTCGGCAAATTCGGTATCATTTGCGTTGAAGATAT
CATCCACGAAATCACCACTTGCGGTAAACACTTCAAACAAGTTAACAACTCTTTATGGCC
ATTCAAATTAAACTGTCCAAGAGGTGGTTTCAACATGAAGAAAACTCCATTCCTCCAAGG
TGGTGATGCTGGTAACCGTGAACACTTAATCAACAACCTCATCCACAGAATGAACTAAAT
TGATAAAATAAATATTAATTTTTTATAAAATAAAAAATAACAAAAAAAAAAAAAAAAAAA
A