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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AI04
Library FC
(Link to library)
Clone ID FC-AI04
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15121-1
Original site URL
Representative seq. ID FC-AI04E
(Link to Original site)
Representative DNA sequence 
>FC-AI04 (FC-AI04Q) /CSM/FC/FC-AI/FC-AI04Q.Seq.d/
AAATTATTTATTTATTTATCTCTATATATATATACAATAAAAGAAAATGAGAAGAACATT
AGCAGGTCCAGGTTCAAGCACTTCAAATCACAAACCAACCGTTGATATTGGTAAAACTGC
ACCAGCAGGTACAAACAATGACGGTTTCAGACGTCAAGGTGCTTCATCAGGTCCACAATC
AAGTGTTTCCACATATACCCCAACCACCGATTCAGGTAAACAAGCACCAGCAGGTGGTAA
CAATGACGGTTTCAGACGTCAAGGTGCCTCATCTGGTCCACAATCAAGTGTTTCCACATA
TACCCCAACCACCGGTTCAGGTAAACAAGCACCAGCAGGTGGTAACCAAGACGGTTTCAG
ACGTACTGGTGCCTCATCAGGTCCACAATCAAGTGTTTCCACATATACCCCAACAAATGA
CTCTGGTAAACAAGCACCAGCCGGTGGTAACCAAGACGGTTTCAGACGTACTGGTGCCTC
ATCAGGTCCACAATCAAGTGTTTCCTCATACACCCCAACTCAAGATCCAGGTGTATCTTC
AAGTGTTTCAGGTGGTGGTGGTAACGATTATTTCAGCCATCACAACGAAGAATCAAACTA
AATATAAATCCTAATTATTTAATTGGCGTGTAAATTTAATTTGTCATTTTTTTTTGTTGT
AATAATGTAAATTCTTTTTTTTTTTTAATTTTTTATTTTAGTTTAAAGGAAAAAAAAAAA
AAAAAATATATATATAAATAAATATCTTCAAATATATTAAACCAAAAAAAAA
sequence update 1996.12.20
Translated Amino Acid sequence 
nylfiylyiyiq*KKMRRTLAGPGSSTSNHKPTVDIGKTAPAGTNNDGFRRQGASSGPQS
SVSTYTPTTDSGKQAPAGGNNDGFRRQGASSGPQSSVSTYTPTTGSGKQAPAGGNQDGFR
RTGASSGPQSSVSTYTPTNDSGKQAPAGGNQDGFRRTGASSGPQSSVSSYTPTQDPGVSS
SVSGGGGNDYFSHHNEESN*i*ilii*lackfnlsfffvvim*ilfff*ffilv*rkkkk
kniyinkylqiy*tkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
klfiylslyiytikeneknisrsrfkhfksqtnr*yw*nctsrykq*rfqtsrcfirsti
kcfhiypnhrfr*tstsrw*q*rfqtsrcliwstikcfhiypnhrfr*tstsrw*prrfq
tywclirstikcfhiypnk*lw*tstsrw*prrfqtywclirstikcflihpnsrsrcif
kcfrwww*rlfqpsqrriklninpnyligv*i*fviffccnnvnsffflifyfslkekkk
kkyiyk*issnilnqkk


Frame B:
nylfiylyiyiq*KKMRRTLAGPGSSTSNHKPTVDIGKTAPAGTNNDGFRRQGASSGPQS
SVSTYTPTTDSGKQAPAGGNNDGFRRQGASSGPQSSVSTYTPTTGSGKQAPAGGNQDGFR
RTGASSGPQSSVSTYTPTNDSGKQAPAGGNQDGFRRTGASSGPQSSVSSYTPTQDPGVSS
SVSGGGGNDYFSHHNEESN*i*ilii*lackfnlsfffvvim*ilfff*ffilv*rkkkk
kniyinkylqiy*tkkk


Frame C:
iiylfisiyiynkrk*eeh*qvqvqalqitnqplilvklhqqvqtmtvsdvkvlhqvhnq
vfphipqppiqvnkhqqvvtmtvsdvkvphlvhnqvfphipqppvqvnkhqqvvtktvsd
vlvphqvhnqvfphipqqmtlvnkhqpvvtktvsdvlvphqvhnqvfphtpqlkiqvylq
vfqvvvvtiisaittknqtkyks*lfnwrvnlichffll**ckfffffnflf*fkgkkkk
kiyi*inifkyikpkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AI04 (FC-AI04Q) /CSM/FC/FC-AI/FC-AI04Q.Seq.d/                     1215   0.0
FC-154 (FC-154Q) /CSM/CG/CG-FC/FC-154Q.Seq.d/                        1215   0.0
SSC764 (SSC764Q) /CSM/SS/SSC7-C/SSC764Q.Seq.d/                       1207   0.0
SSG279 (SSG279Q) /CSM/SS/SSG2-D/SSG279Q.Seq.d/                       1205   0.0
SSC756 (SSC756Q) /CSM/SS/SSC7-C/SSC756Q.Seq.d/                       1179   0.0
SSB350 (SSB350Q) /CSM/SS/SSB3-C/SSB350Q.Seq.d/                       1172   0.0
SSK688 (SSK688Q) /CSM/SS/SSK6-D/SSK688Q.Seq.d/                       1156   0.0
SSK680 (SSK680Q) /CSM/SS/SSK6-D/SSK680Q.Seq.d/                       1156   0.0
SSA372 (SSA372Q) /CSM/SS/SSA3-C/SSA372Q.Seq.d/                       1152   0.0
VSB503 (VSB503Q) /CSM/VS/VSB5-A/VSB503Q.Seq.d/                       1051   0.0
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            46   9e-07  6
AE014844|AE014844.1 Plasmodium falciparum 3D7 chromosome 12 section 1 of 9 of the complete sequence.    40   3e-06  9
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           42   8e-06  5
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    38   2e-05  8
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    38   2e-05  10
AE014827|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence.    38   3e-05  7
BX322543|BX322543.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38   3e-05  8
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12 section 3 of 9 of the complete sequence.    38   4e-05  6
AL008970|AL008970.3 Plasmodium falciparum MAL3P4.                  38   5e-05  8
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    38   6e-05  9
dna update 2003.11.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10411_1(L10411|pid:none) Entamoeba histolytica 20 kDa repeat pr...    94   5e-18
CR382129_153(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    58   3e-07
CU928178_107(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    55   2e-06
(P08672) RecName: Full=Circumsporozoite protein;          Short=...    55   2e-06
CR382133_38(CR382133|pid:none) Debaryomyces hansenii strain CBS7...    52   2e-05
AC116032_6(AC116032|pid:none) Dictyostelium discoideum chromosom...    51   4e-05
(P54681) RecName: Full=Protein rtoA; AltName: Full=Ratio-A; Flag...    51   5e-05
S52714(S52714) sericin1B - silkworm  &Z48802_1(Z48802|pid:none)        51   5e-05
(Q8T2I5) RecName: Full=Probable GH family 25 lysozyme 3;        ...    51   5e-05
FM204884_498(FM204884|pid:none) Streptococcus equi subsp. zooepi...    50   8e-05
protein update 2009. 7. 2
PSORT 

 psg: 0.84  gvh: 0.34  alm: 0.65  top: 0.30  tms: 0.00  mit: 0.46  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for FC-AI04 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AI04E
Full length Seq. 
>FC-AI04E.Seq
AAATTATTTATTTATTTATCTCTATATATATATACAATAAAAGAAAATGAGAAGAACATT
AGCAGGTCCAGGTTCAAGCACTTCAAATCACAAACCAACCGTTGATATTGGTAAAACTGC
ACCAGCAGGTACAAACAATGACGGTTTCAGACGTCAAGGTGCTTCATCAGGTCCACAATC
AAGTGTTTCCACATATACCCCAACCACCGATTCAGGTAAACAAGCACCAGCAGGTGGTAA
CAATGACGGTTTCAGACGTCAAGGTGCCTCATCTGGTCCACAATCAAGTGTTTCCACATA
TACCCCAACCACCGGTTCAGGTAAACAAGCACCAGCAGGTGGTAACCAAGACGGTTTCAG
ACGTACTGGTGCCTCATCAGGTCCACAATCAAGTGTTTCCACATATACCCCAACAAATGA
CTCTGGTAAACAAGCACCAGCCGGTGGTAACCAAGACGGTTTCAGACGTACTGGTGCCTC
ATCAGGTCCACAATCAAGTGTTTCCTCATACACCCCAACTCAAGATCCAGGTGTATCTTC
AAGTGTTTCAGGTGGTGGTGGTAACGATTATTTCAGCCATCACAACGAAGAATCAAACTA
AATATAAATCCTAATTATTTAATTGGCGTGTAAATTTAATTTGTCATTTTTTTTTGTTGT
AATAATGTAAATTCTTTTTTTTTTTTAATTTTTTATTTTAGTTTAAAGGAAAAAAAAAAA
AAAAAATATATATATAAATAAATATCTTCAAATATATTAAACCAAAAAAAAA
Length of full length seq. 772