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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AI03
Library FC
(Link to library)
Clone ID FC-AI03
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15833-1
Original site URL
Representative seq. ID FC-AI03P
(Link to Original site)
Representative DNA sequence 
>FC-AI03 (FC-AI03Q) /CSM/FC/FC-AI/FC-AI03Q.Seq.d/
GGAAAAAACAAATAAAAAAAAACACACCTATATATATACATTTAAATAAAATGTCAGAAA
ATAATACAGATACAGTTATGGGTGATTCAAATCCATCAACTAAAATTACAGAAACACCAA
TGAATGAGACACCATCATCTACCACCACCACCACCGCAACTACTACAACTACAGCCACAA
CACCACCACAACAAACTCAACAACCACCACAACCACAACTTTCAACCACAGTAACAGAAA
CCACACCAACCACTAGAATAGAAGAAATTAAATCAGTTAAATCACAAAGAGTTGCAACAC
ATAGTCATATTAAAGGTTTAGGTTTATTAGAAAATGGTACAGCTTCAAATATTGCAGATG
GTTTAGTAGGCCAATGTAAAGCAAGAGAAGCAGCAGGTATTGTTACAGAATTAATTAAAT
CAAAAAAAATGGCAGGTAAAGCATTATTATTAGCAGGACCACCAGGTACAGGTAAAACAG
CATTAGCATTAGCAATTTCACAAGAGTTAGGTACAAAAGTACCATTTTGTCCAATGGTAG
GATCAGAGGTATATTCATCAGAAGTTAAAAAGACAGAGATATTGATGGAGAATTTTAGAC
GTTCAATTGGATTGAGAGTTAAAGAGATTAAAGAGGTTTATGAGGGTGAAGTTACAGAGA
TAACACAGAGGAACAGATAATCATGGGTGGXXXXXXXXXXGATATCATGTCGATGATGGG
TCAAATGATGAAACCCAAGAAAACAGAGATCACAGAGAAACTTCGTTTGGAAATTAATAT
AATTGTAAATCGTTACATTGAGCAAGGTGTAGCAGAGTTGGTACCAGGTGTTTTGTTCAT
TGATGAGGTTCACATGTTGGATATAGAATGTTTTTCATACTTAAATCGTGCATTGGAGTC
AACATTGGCACCAATTGTAGTTTTTGCAACCAATCGTGGCAATTGTGTAATCAAAGGCAC
CGATAACGATATTCAATCTCCACATGGCATCCCTGTGGATCTTTTAGATCGTCTTATGAT
CATTCGTACCCTTCCATATAATTACAATGAAATCGTTCAAATTCTCACCATTCGTGCCTC
AATTGAAAATCATAAAATCGATGACGAAGCATTGATGTATTTAGCTGAAATTGGTAATAC
AGCTTCATTCGTTATGCAATTCAATTATTAACACCAGCTTCAATCCTTTCAAAAACTTAT
TCAAGACCATCAATTACAAAAGAAGATATTGAAGAAGTTACATCATTATTTAATGATGCT
AAAACTTCTGCAAAATTATTAGAACAAAATAAATCAAAATATTTATATTAAAAAAAAATA
AAAATTAAAATTAAAAAAAAAAAAAAAAAAA
sequence update 1996.12.20
Translated Amino Acid sequence 
ektnkkkhtyiytfk*nvrk*yrysyg*fksin*nyrntne*dtiiyhhhhrnyynyshn
ttttnstttttttfnhsnrnhtnh*nrrn*is*itkscnt*sy*rfrfirkwysfkycrw
fsrpm*skrssrycyrin*ikkngr*siiisrttryr*nsisisnftrvrykstilsngr
irgifirs*kdrdidgef*tfnwies*rd*rgl*g*SYRDNTEEQIIMG---

---DIMSMMGQMMKPKKTEITEKLRLEINIIVNRYIEQGVAELVPGVLFIDEVHMLDIEC
FSYLNRALESTLAPIVVFATNRGNCVIKGTDNDIQSPHGIPVDLLDRLMIIRTLPYNYNE
IVQILTIRASIENHKIDDEALMYLAEIGNTASFVMQFNY*hqlqsfqkliqdhqlqkkil
kklhhylmmlkllqny*nkinqniyikkk*klklkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
gknk*kkthlyiyi*ikcqkiiqiqlwviqihqlklqkhq*mrhhhlpppppqllqlqpq
hhhnklnnhhnhnfqpq*qkphqple*kklnqlnhkelqhivilkv*vy*kmvqlqilqm
v**anvkqekqqvllqn*lnqkkwqvkhyy*qdhqvqvkqh*h*qfhks*vqkyhfvqw*
dqryihqklkrqry*wrildvqld*elkrlkrfmrvklqr*hrgtdnhgw---

---DIMSMMGQMMKPKKTEITEKLRLEINIIVNRYIEQGVAELVPGVLFIDEVHMLDIEC
FSYLNRALESTLAPIVVFATNRGNCVIKGTDNDIQSPHGIPVDLLDRLMIIRTLPYNYNE
IVQILTIRASIENHKIDDEALMYLAEIGNTASFVMQFNY*hqlqsfqkliqdhqlqkkil
kklhhylmmlkllqny*nkinqniyikkk*klklkkkkkk

Frame B:
ektnkkkhtyiytfk*nvrk*yrysyg*fksin*nyrntne*dtiiyhhhhrnyynyshn
ttttnstttttttfnhsnrnhtnh*nrrn*is*itkscnt*sy*rfrfirkwysfkycrw
fsrpm*skrssrycyrin*ikkngr*siiisrttryr*nsisisnftrvrykstilsngr
irgifirs*kdrdidgef*tfnwies*rd*rgl*g*SYRDNTEEQIIMG---

---iscr*wvk**nprkqrsqrnfvwkli*l*ivtlskv*qswyqvfcslmrftcwi*nv
fht*ivhwsqhwhql*flqpivaiv*skapitifnlhmaslwif*ivl*sfvpfhiitmk
sfkfspfvpqlkiiksmtkh*ci*lklviqlhslcnsiintsfnpfknlfktinykrry*
rsyiii**c*nfckiirtk*ikifilkknkn*n*kkkkk

Frame C:
kkqikkntpiyihlnkmsenntdtvmgdsnpstkitetpmnetpsstttttatttttatt
ppqqtqqppqpqlsttvtettpttrieeiksvksqrvathshikglgllengtasniadg
lvgqckareaagivtelikskkmagkalllagppgtgktalalaisqelgtkvpfcpmvg
sevyssevkkteilmenfrrsiglrvkeikevyegevteitqrnr*swv---

---yhvddgsndetqenrdhretsfgn*ynckslh*arcsrvgtrcfvh**gshvgyrmf
filkscigvnigtncsfcnqswqlcnqrhr*rysistwhpcgsfrssydhsypsi*lq*n
rsnshhscln*ks*nr*rsidvfs*nw*ysfiryaiqlltpasilsktysrpsitkedie
evtslfndaktsaklleqnkskyly*kkikikikkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AI03 (FC-AI03Q) /CSM/FC/FC-AI/FC-AI03Q.Seq.d/                     2004   0.0
SFB553 (SFB553Q) /CSM/SF/SFB5-C/SFB553Q.Seq.d/                       1185   0.0
CFC249 (CFC249Q) /CSM/CF/CFC2-C/CFC249Q.Seq.d/                       1185   0.0
CFH364 (CFH364Q) /CSM/CF/CFH3-C/CFH364Q.Seq.d/                       1178   0.0
SLJ702 (SLJ702Q) /CSM/SL/SLJ7-A/SLJ702Q.Seq.d/                        515   e-145
SFB751 (SFB751Q) /CSM/SF/SFB7-C/SFB751Q.Seq.d/                        460   e-128
CFF531 (CFF531Q) /CSM/CF/CFF5-B/CFF531Q.Seq.d/                        371   e-101
VFF618 (VFF618Q) /CSM/VF/VFF6-A/VFF618Q.Seq.d/                        100   1e-19
VFB579 (VFB579Q) /CSM/VF/VFB5-D/VFB579Q.Seq.d/                        100   1e-19
SSL156 (SSL156Q) /CSM/SS/SSL1-C/SSL156Q.Seq.d/                        100   1e-19
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL409094|AL409094.1 T7 end of clone AV0AA012F05 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    52  3e-22  4
BM572221|BM572221.1 fx08d02.y1 Gong zebrafish ovary Danio rerio cDNA clone 5619123 5' similar to TR:O35753 O35753 TIP49. ;, mRNA sequence.    72  4e-19  2
BD133621|BD133621.1 Conjugated tag.                               52  7e-19  4
AX077232|AX077232.1 Sequence 9 from Patent WO0105975.             94  5e-18  3
AX077226|AX077226.1 Sequence 3 from Patent WO0105975.             94  5e-18  3
AX077228|AX077228.1 Sequence 5 from Patent WO0105975.             86  7e-17  3
AX077230|AX077230.1 Sequence 7 from Patent WO0105975.             86  7e-17  3
AY092764|AY092764.1 Danio rerio pontin mRNA, complete cds.        64  2e-16  2
BE642147|BE642147.1 Cri2_5_E10_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_5_E10 5', mRNA sequence.    76  7e-16  3
Z48784|Z48784.1 S.cerevisiae chromosome IV cosmid 9346.           52  1e-15  4
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB007651_11(AB007651|pid:none) Arabidopsis thaliana genomic DNA,...   209   1e-60
BC071105_1(BC071105|pid:none) Xenopus laevis pontin, mRNA (cDNA ...   216   1e-60
(Q0IFL2) RecName: Full=RuvB-like helicase 1;          EC=3.6.1.-...   215   2e-60
AX077228_1(AX077228|pid:none) Sequence 5 from Patent WO0105975. ...   202   4e-60
AX077230_1(AX077230|pid:none) Sequence 7 from Patent WO0105975.       198   4e-60
(Q8AWW7) RecName: Full=RuvB-like 1;          EC=3.6.1.-; AltName...   215   5e-60
BC071316_1(BC071316|pid:none) Danio rerio RuvB-like 1 (E. coli),...   215   5e-60
(Q9DE26) RecName: Full=RuvB-like 1;          EC=3.6.1.-; AltName...   216   7e-60
AP003800_1(AP003800|pid:none) Oryza sativa Japonica Group genomi...   199   8e-60
AK243443_1(AK243443|pid:none) Oryza sativa Japonica Group cDNA, ...   207   9e-60
protein update 2009. 4.13
PSORT 

 psg: 0.75  gvh: 0.24  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for FC-AI03 is cyt
5' end seq. ID FC-AI03F
5' end seq. 
>FC-AI03F.Seq
GGAAAAAACAAATAAAAAAAAACACACCTATATATATACATTTAAATAAAATGTCAGAAA
ATAATACAGATACAGTTATGGGTGATTCAAATCCATCAACTAAAATTACAGAAACACCAA
TGAATGAGACACCATCATCTACCACCACCACCACCGCAACTACTACAACTACAGCCACAA
CACCACCACAACAAACTCAACAACCACCACAACCACAACTTTCAACCACAGTAACAGAAA
CCACACCAACCACTAGAATAGAAGAAATTAAATCAGTTAAATCACAAAGAGTTGCAACAC
ATAGTCATATTAAAGGTTTAGGTTTATTAGAAAATGGTACAGCTTCAAATATTGCAGATG
GTTTAGTAGGCCAATGTAAAGCAAGAGAAGCAGCAGGTATTGTTACAGAATTAATTAAAT
CAAAAAAAATGGCAGGTAAAGCATTATTATTAGCAGGACCACCAGGTACAGGTAAAACAG
CATTAGCATTAGCAATTTCACAAGAGTTAGGTACAAAAGTACCATTTTGTCCAATGGTAG
GATCAGAGGTATATTCATCAGAAGTTAAAAAGACAGAGATATTGATGGAGAATTTTAGAC
GTTCAATTGGATTGAGAGTTAAAGAGATTAAAGAGGTTTATGAGGGTGAAGTTACAGAGA
TAACACAGAGGAACAGATAATCATGGGTGG----------
Length of 5' end seq. 690
3' end seq. ID FC-AI03Z
3' end seq. 
>FC-AI03Z.Seq
----------GATATCATGTCGATGATGGGTCAAATGATGAAACCCAAGAAAACAGAGAT
CACAGAGAAACTTCGTTTGGAAATTAATATAATTGTAAATCGTTACATTGAGCAAGGTGT
AGCAGAGTTGGTACCAGGTGTTTTGTTCATTGATGAGGTTCACATGTTGGATATAGAATG
TTTTTCATACTTAAATCGTGCATTGGAGTCAACATTGGCACCAATTGTAGTTTTTGCAAC
CAATCGTGGCAATTGTGTAATCAAAGGCACCGATAACGATATTCAATCTCCACATGGCAT
CCCTGTGGATCTTTTAGATCGTCTTATGATCATTCGTACCCTTCCATATAATTACAATGA
AATCGTTCAAATTCTCACCATTCGTGCCTCAATTGAAAATCATAAAATCGATGACGAAGC
ATTGATGTATTTAGCTGAAATTGGTAATACAGCTTCATTCGTTATGCAATTCAATTATTA
ACACCAGCTTCAATCCTTTCAAAAACTTATTCAAGACCATCAATTACAAAAGAAGATATT
GAAGAAGTTACATCATTATTTAATGATGCTAAAACTTCTGCAAAATTATTAGAACAAAAT
AAATCAAAATATTTATATTAAAAAAAAATAAAAATTAAAATTAAAAAAAAAAAAAAAAAA
A
Length of 3' end seq. 651
Connected seq. ID FC-AI03P
Connected seq. 
>FC-AI03P.Seq
GGAAAAAACAAATAAAAAAAAACACACCTATATATATACATTTAAATAAAATGTCAGAAA
ATAATACAGATACAGTTATGGGTGATTCAAATCCATCAACTAAAATTACAGAAACACCAA
TGAATGAGACACCATCATCTACCACCACCACCACCGCAACTACTACAACTACAGCCACAA
CACCACCACAACAAACTCAACAACCACCACAACCACAACTTTCAACCACAGTAACAGAAA
CCACACCAACCACTAGAATAGAAGAAATTAAATCAGTTAAATCACAAAGAGTTGCAACAC
ATAGTCATATTAAAGGTTTAGGTTTATTAGAAAATGGTACAGCTTCAAATATTGCAGATG
GTTTAGTAGGCCAATGTAAAGCAAGAGAAGCAGCAGGTATTGTTACAGAATTAATTAAAT
CAAAAAAAATGGCAGGTAAAGCATTATTATTAGCAGGACCACCAGGTACAGGTAAAACAG
CATTAGCATTAGCAATTTCACAAGAGTTAGGTACAAAAGTACCATTTTGTCCAATGGTAG
GATCAGAGGTATATTCATCAGAAGTTAAAAAGACAGAGATATTGATGGAGAATTTTAGAC
GTTCAATTGGATTGAGAGTTAAAGAGATTAAAGAGGTTTATGAGGGTGAAGTTACAGAGA
TAACACAGAGGAACAGATAATCATGGGTGG----------GATATCATGTCGATGATGGG
TCAAATGATGAAACCCAAGAAAACAGAGATCACAGAGAAACTTCGTTTGGAAATTAATAT
AATTGTAAATCGTTACATTGAGCAAGGTGTAGCAGAGTTGGTACCAGGTGTTTTGTTCAT
TGATGAGGTTCACATGTTGGATATAGAATGTTTTTCATACTTAAATCGTGCATTGGAGTC
AACATTGGCACCAATTGTAGTTTTTGCAACCAATCGTGGCAATTGTGTAATCAAAGGCAC
CGATAACGATATTCAATCTCCACATGGCATCCCTGTGGATCTTTTAGATCGTCTTATGAT
CATTCGTACCCTTCCATATAATTACAATGAAATCGTTCAAATTCTCACCATTCGTGCCTC
AATTGAAAATCATAAAATCGATGACGAAGCATTGATGTATTTAGCTGAAATTGGTAATAC
AGCTTCATTCGTTATGCAATTCAATTATTAACACCAGCTTCAATCCTTTCAAAAACTTAT
TCAAGACCATCAATTACAAAAGAAGATATTGAAGAAGTTACATCATTATTTAATGATGCT
AAAACTTCTGCAAAATTATTAGAACAAAATAAATCAAAATATTTATATTAAAAAAAAATA
AAAATTAAAATTAAAAAAAAAAAAAAAAAAA
Length of connected seq. 1341
Full length Seq ID -
Full length Seq. -
Length of full length seq. -