FC-AI02
Library FC
(Link to library)
Clone ID FC-AI02
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16513-1
Original site URL
Representative seq. ID FC-AI02E
(Link to Original site)
Representative DNA sequence
>FC-AI02 (FC-AI02Q) /CSM/FC/FC-AI/FC-AI02Q.Seq.d/
CAAGCTGGTGTTAACCGTGTCAAAGGTGGTAAACTCGCTGTTTGTTGATGTAGTTGATGA
AAGTATCAAGATCACGACCTTGTTACTTTCATCAACTACATCAACAAACCAAGCTGGTGT
TAACCGTGTCAAAGGTGGTAAACTCGCTGTTGGTGCTGGTCGTGTTGAACAACTCGATAC
TATTGCCACTGAATTCATCGCTGCCGCTGCTGAAGTCCGTAAGGAACTCGTCAAGAAAGC
TCAAACCGTCGTTGATTCTCTCCCAGAAGAATTAAGAACTGAAGGTTCATACTACGTCAA
AGTCATGAAAACCATTGCTGAAAAATCAATCGATTTTGTAACCACTGAAATCGCTCGTAT
CACCAAATTAGTCTCTGGTTCAATGTCTGGAAAGAAAGCTGATGAATTTGCCAAGAAACT
CAATATTTTAGAATCTTTTCAAATCAAAATAAATTAAATTTAATTTAGAAAATAAAAAAT
AAAATAAAAGAAAAAAAATAAAATATAAAATAAAATTTTAAAAAAAATAAAAAAA
sequence update 1996.12. 6
Translated Amino Acid sequence
KLVLTVSKVVNSLFVDVVDESIKITTLLLSSTTSTNQAGVNRVKGGKLAVGAGRVEQLDT
IATEFIAAAAEVRKELVKKAQTVVDSLPEELRTEGSYYVKVMKTIAEKSIDFVTTEIARI
TKLVSGSMSGKKADEFAKKLNILESFQIKIN*i*frk*kik*kkknki*nkilkkikk


Translated Amino Acid sequence (All Frames)
Frame A:
qagvnrvkggklavc*cs**kyqdhdlvtfinyinkpswc*pcqrw*trcwcwsc*ttry
ych*ihrcrc*sp*gtrqessnrr*fsprrikn*rfilrqshenhc*kinrfcnh*nrsy
hqislwfnvwkes**icqetqyfrifsnqnklnli*kiknkikekk*nik*nfkknkk


Frame B:
KLVLTVSKVVNSLFVDVVDESIKITTLLLSSTTSTNQAGVNRVKGGKLAVGAGRVEQLDT
IATEFIAAAAEVRKELVKKAQTVVDSLPEELRTEGSYYVKVMKTIAEKSIDFVTTEIARI
TKLVSGSMSGKKADEFAKKLNILESFQIKIN*i*frk*kik*kkknki*nkilkkikk


Frame C:
swc*pcqrw*trcllm*lmkvsrsrpcyfhqlhqqtklvltvskvvnsllvlvvlnnsil
lplnsslpllksvrnssrklkpslilsqkn*elkvhttsks*kpllknqsil*plkslvs
pn*slvqclerklmnlprnsif*nlfksk*ikfnlenkk*nkrkkikykikf*kk*k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AI02 (FC-AI02Q) /CSM/FC/FC-AI/FC-AI02Q.Seq.d/ 872 0.0
VSF163 (VSF163Q) /CSM/VS/VSF1-C/VSF163Q.Seq.d/ 690 0.0
VFO821 (VFO821Q) /CSM/VF/VFO8-A/VFO821Q.Seq.d/ 690 0.0
VFO241 (VFO241Q) /CSM/VF/VFO2-B/VFO241Q.Seq.d/ 690 0.0
VFN359 (VFN359Q) /CSM/VF/VFN3-C/VFN359Q.Seq.d/ 690 0.0
VFN233 (VFN233Q) /CSM/VF/VFN2-B/VFN233Q.Seq.d/ 690 0.0
VFN206 (VFN206Q) /CSM/VF/VFN2-A/VFN206Q.Seq.d/ 690 0.0
VFM733 (VFM733Q) /CSM/VF/VFM7-B/VFM733Q.Seq.d/ 690 0.0
VFM578 (VFM578Q) /CSM/VF/VFM5-D/VFM578Q.Seq.d/ 690 0.0
VFM537 (VFM537Q) /CSM/VF/VFM5-B/VFM537Q.Seq.d/ 690 0.0

own update 2003.10.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 652 0.0 2
AF019112|AF019112.1 Dictyostelium discoideum protein disulfide isomerase (dis) mRNA, complete cds. 644 0.0 2
AI728718|AI728718.1 BNLGHi11417 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to FOLLICULAR VARIANT TRANSLOCATION PROTEIN, mRNA sequence. 42 0.66 2
AC087794|AC087794.1 Caenorhabditis elegans cosmid Y32G9A, complete sequence. 44 1.9 1
AC135570|AC135570.2 Rattus norvegicus clone CH230-499E1, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 44 1.9 1
AX540651|AX540651.1 Sequence 7 from Patent WO0240688. 44 1.9 1
AB015476|AB015476.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MNC6. 44 1.9 1
AC006754|AC006754.1 Caenorhabditis elegans clone Y40B10, WORKING DRAFT SEQUENCE, 5 unordered pieces. 44 1.9 1
AC006732|AC006732.1 Caenorhabditis elegans clone Y32G9, WORKING DRAFT SEQUENCE, 9 unordered pieces. 44 1.9 1
AL940715|AL940715.1 Arabidopsis thaliana T-DNA flanking sequence GK-250H09-014490. 44 1.9 1
dna update 2003.11.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86IA3) RecName: Full=Protein disulfide-isomerase 1; S... 183 2e-46
AF019112_1(AF019112|pid:none) Dictyostelium discoideum protein d... 181 7e-46
AY730725_1(AY730725|pid:none) Entamoeba histolytica protein disu... 69 1e-10
AE017341_67(AE017341|pid:none) Cryptococcus neoformans var. neof... 67 3e-10
AY739288_1(AY739288|pid:none) Zea mays protein disulfide isomera... 60 7e-09
EU966127_1(EU966127|pid:none) Zea mays clone 291908 PDIL2-2 - Ze... 60 7e-09
EF086125_1(EF086125|pid:none) Picea sitchensis clone WS0285_I21 ... 58 1e-07
EU284948_1(EU284948|pid:none) TSA: Elaeis guineensis EgEfMPOB001... 58 2e-07
T03644(T03644) probable protein disulfide-isomerase (EC 5.3.4.1)... 56 5e-07
AK220746_1(AK220746|pid:none) Arabidopsis thaliana mRNA for puta... 56 7e-07
protein update 2009. 7. 2
PSORT

psg: 0.76 gvh: 0.58 alm: 0.32 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for FC-AI02 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AI02E
Full length Seq.
>FC-AI02E.Seq
CAAGCTGGTGTTAACCGTGTCAAAGGTGGTAAACTCGCTGTTTGTTGATGTAGTTGATGA
AAGTATCAAGATCACGACCTTGTTACTTTCATCAACTACATCAACAAACCAAGCTGGTGT
TAACCGTGTCAAAGGTGGTAAACTCGCTGTTGGTGCTGGTCGTGTTGAACAACTCGATAC
TATTGCCACTGAATTCATCGCTGCCGCTGCTGAAGTCCGTAAGGAACTCGTCAAGAAAGC
TCAAACCGTCGTTGATTCTCTCCCAGAAGAATTAAGAACTGAAGGTTCATACTACGTCAA
AGTCATGAAAACCATTGCTGAAAAATCAATCGATTTTGTAACCACTGAAATCGCTCGTAT
CACCAAATTAGTCTCTGGTTCAATGTCTGGAAAGAAAGCTGATGAATTTGCCAAGAAACT
CAATATTTTAGAATCTTTTCAAATCAAAATAAATTAAATTTAATTTAGAAAATAAAAAAT
AAAATAAAAGAAAAAAAATAAAATATAAAATAAAATTTTAAAAAAAATAAAAAAA
Length of full length seq. 535