>FC-AG17 (FC-AG17Q) /CSM/FC/FC-AG/FC-AG17Q.Seq.d/
XXXXXXXXXXATTAAATCAATATATCGAATGGATGCAACAATATAATATTTCAAATCCAG
TATACCAAACATGGGACGTCTGGAACAATTATGGTCAAGATTTGTTTGTTCCATCAACAA
CATGTGATGATTTCACTCAACAATCAATCGAACATTTAGGTAGTATTGGTATTAATTATA
ATTGTTCAACAGTTTTCAAGAGAGATTACATTAATCTTTTCACTGAAAAACCACAACCAA
TCGATTTCACAGAACATTATGATGATATCTTTAAATTCTATGAAGCTGTATTAGAAATTA
AAGAAGGCTCAATTGCACAAATCATTGAAAGAATTTTATCAATCATTGGTTTAAAGAAAT
ATATTTACGTTCAAGGTGAATATTATTTATTAGAATTAAATTATCCATTTATGAATGCAA
AATATGATTATATCACATTACCAGGTTGTCCAGCAAATGGTATCGATTATGAAAATGGCA
ATTTTATTCATCTCAATTAGATTATTTTAAAATTAGATTATTTTAAATTAAATTGGTTAT
AAATAAAAACTAAAAACAAAAATAATAAAAAAAAAATATCTTTTTTTTTTTTAATATTTT
TCAAACTGTTTCTGAAAA

---LNQYIEWMQQYNISNPVYQTWDVWNNYGQDLFVPSTTCDDFTQQSIEHLGSIGINYN
CSTVFKRDYINLFTEKPQPIDFTEHYDDIFKFYEAVLEIKEGSIAQIIERILSIIGLKKY
IYVQGEYYLLELNYPFMNAKYDYITLPGCPANGIDYENGNFIHLN*iilkldyfklnwl*
iktknknnkkkisfffliffklflk

Frame A:
---LNQYIEWMQQYNISNPVYQTWDVWNNYGQDLFVPSTTCDDFTQQSIEHLGSIGINYN
CSTVFKRDYINLFTEKPQPIDFTEHYDDIFKFYEAVLEIKEGSIAQIIERILSIIGLKKY
IYVQGEYYLLELNYPFMNAKYDYITLPGCPANGIDYENGNFIHLN*iilkldyfklnwl*
iktknknnkkkisfffliffklflk


Frame B:
---*inisngcnniifqiqytkhgtsgtimvkiclfhqqhvmislnnqsni*vvlvliii
vqqfsreitlifslknhnqsisqnimmislnsmkly*klkkaqlhkslkefyqslv*rni
ftfkvniiy*n*iihl*mqnmiishyqvvqqmvsimkmailfisirlf*n*iiln*igyk
*klktkiikkkylfff*yfsncf*k


Frame C:
---ksiyrmdati*yfkssipnmgrleqlwsrfvcsinnm**fhstinrtfr*ywy*l*l
fnsfqerlh*sfh*ktttnrfhrtl**yl*il*scirn*rrlnctnh*knfinhwfkeiy
lrsr*ilfiriklsiyecki*lyhitrlsskwyrl*kwqfyssqldyfkirlf*iklvin
kn*kqk**kkniffffnifqtvse

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK458 (SSK458Q) /CSM/SS/SSK4-C/SSK458Q.Seq.d/                        932   0.0
FC-AG17 (FC-AG17Q) /CSM/FC/FC-AG/FC-AG17Q.Seq.d/                      932   0.0
FC-AD10 (FC-AD10Q) /CSM/FC/FC-AD/FC-AD10Q.Seq.d/                      916   0.0
FC-080 (FC-080Q) /CSM/CG/CG-FC/FC-080Q.Seq.d/                         916   0.0
SSC271 (SSC271Q) /CSM/SS/SSC2-C/SSC271Q.Seq.d/                        870   0.0
SFJ661 (SFJ661Q) /CSM/SF/SFJ6-C/SFJ661Q.Seq.d/                        817   0.0
VFG895 (VFG895Q) /CSM/VF/VFG8-D/VFG895Q.Seq.d/                        676   0.0
SLE504 (SLE504Q) /CSM/SL/SLE5-A/SLE504Q.Seq.d/                        646   0.0
VFC480 (VFC480Q) /CSM/VF/VFC4-D/VFC480Q.Seq.d/                        622   e-177
VHL857 (VHL857Q) /CSM/VH/VHL8-C/VHL857Q.Seq.d/                        620   e-177

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   577  0.0  5
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    32  0.16  9
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    32  0.24  9
BZ961705|BZ961705.1 PUFII70TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa350K19, DNA sequence.    46  0.49  1
BZ961703|BZ961703.1 PUFII70TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa350K19, DNA sequence.    46  0.49  1
BZ372458|BZ372458.1 ie67g03.b1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ie67g03 5', DNA sequence.    46  0.49  1
CC346000|CC346000.1 OGTAP17TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0390D10, DNA sequence.    46  0.49  1
AE014844|AE014844.1 Plasmodium falciparum 3D7 chromosome 12 section 1 of 9 of the complete sequence.    42  0.72  8
AC010071|AC010071.6 Drosophila melanogaster 3L BAC RP98-18G16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    44  0.85  3
AL929442|AL929442.9 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-95M20.    44  1.2  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q553W9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5 ...   347   2e-94
(Q86JG6) RecName: Full=Cln5-like protein 1; Flags: Precursor;  &...    69   1e-10
(Q1ZYR0) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    48   2e-04
(Q54WC3) RecName: Full=Cln5-like protein 2; Flags: Precursor;          47   3e-04
CR761663_1(CR761663|pid:none) Xenopus tropicalis finished cDNA, ...    46   7e-04
AY885123_1(AY885123|pid:none) Canis familiaris CLN5 (CLN5) gene,...    45   0.002
(Q5JZQ9) Ceroid-lipofuscinosis neuronal protein 5 precursor (Pro...    45   0.002
AF068227_1(AF068227|pid:none) Homo sapiens putative transmembran...    44   0.003
AK075109_1(AK075109|pid:none) Homo sapiens cDNA FLJ90628 fis, cl...    44   0.003
(A2TJ54) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    42   0.013

 psg: 0.75  gvh: 0.37  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for FC-AG17 is nuc

>FC-AG17Z.Seq
----------ATTAAATCAATATATCGAATGGATGCAACAATATAATATTTCAAATCCAG
TATACCAAACATGGGACGTCTGGAACAATTATGGTCAAGATTTGTTTGTTCCATCAACAA
CATGTGATGATTTCACTCAACAATCAATCGAACATTTAGGTAGTATTGGTATTAATTATA
ATTGTTCAACAGTTTTCAAGAGAGATTACATTAATCTTTTCACTGAAAAACCACAACCAA
TCGATTTCACAGAACATTATGATGATATCTTTAAATTCTATGAAGCTGTATTAGAAATTA
AAGAAGGCTCAATTGCACAAATCATTGAAAGAATTTTATCAATCATTGGTTTAAAGAAAT
ATATTTACGTTCAAGGTGAATATTATTTATTAGAATTAAATTATCCATTTATGAATGCAA
AATATGATTATATCACATTACCAGGTTGTCCAGCAAATGGTATCGATTATGAAAATGGCA
ATTTTATTCATCTCAATTAGATTATTTTAAAATTAGATTATTTTAAATTAAATTGGTTAT
AAATAAAAACTAAAAACAAAAATAATAAAAAAAAAATATCTTTTTTTTTTTTAATATTTT
TCAAACTGTTTCTGAAAA