>FC-AG03 (FC-AG03Q) /CSM/FC/FC-AG/FC-AG03Q.Seq.d/
ACCAAACGATATTTATATACATCCAATATATTTTTATATATTGAATTAAAATTTTAAAAA
AAGAATGTCAAACAAGGTATTAATGATTGATGGTGATCGTATCAGTGGTAATGAAGTTAG
AGCACAAAATGTTTTAGCAGTTACAGCAATTGCAAATATAGTTAAAACATCATTTGGACC
AATTGGTTTAGATAAAATGTTAATTGATAATATTGGATCAATTGTTGTTACCAATGATGG
TGCAACCATTTTACAAAAGATTGATATAGAACATCCAGCAGCAAAGATTTTAGTACAATT
ATCAGAATTGCAAGATCAAGAAGTTGGTGATGGTACAACTACAGTTGTAATTTTAGCAGC
AGAATTATTGAAACGTGCCAATGAATTGGTAGCACGTAAAGTACATCCAACAGTTATTAT
TAGTGGTTTTAGATTAGCATGTACAGAAGCAATCAAATATATCAACGAAACATTAGCAGT
TAAAGTTGAAACCTTACCAAAGGATTTCATTGTAAACATTGCCAAGACATCAATGTCATC
AAAGACCATCAATGACGATAGTGATTTCTTTTCAAAGATTGTCATTGAGGCAATCACTCG
TGTGAAAACCATCGATTACAAAGGTGACGTAAAATATCCAXXXXXXXXXXTGATACCACC
GCCTTGGGTATTGCCGATGAAGTTGTTCAAGATAGATTGGCCGATGATGAATTAATCATT
GTCAAAAACTCAAATAAGAAATCAGCTTCAATCATTCTTCGTGGTGCCAATGAATTAATG
TTGGATGAAATGGAACGTTCCATTCATGACTCTCTCTGTATCGTAAAGAGAACTTTAGAA
TCTGGAACCATTGTTCCAGGTGGTGGTGCAGTTGAATCTGCCCTCTCTATCTATCTCGAT
AATATTGCCGCCACAATGGGTAGTCGTAAACAATTAGCAATCTCTGAATTTGCTGAATCC
CTCTTGGTTGTACCAAAACAATTGGCTGTAAATGCTGCTCTTGATGCCTCTGATTTAGTT
TCAAAATTAAAAGCCTATCATCATGCCGCTCAAACTGATCCATCAAAGAAATCTTACGCA
TACTCTGGTCTCGATTTATTCAATAACAAAGTTAGAAATAATTTAGAGGCTGGTGTTTTA
GAACCTGCCATTGCCAAAATCAAATGTATCAAATTTGCAACTGAAAGCGCTATCACCATC
CTTCGTATCGATGATAAAATCACTCTTAATCCAAGAGAACAACAAGGTGGTGATCATGAA
GGTCATGGACATTAAA

pndiyihpiyfyiln*NFKKRMSNKVLMIDGDRISGNEVRAQNVLAVTAIANIVKTSFGP
IGLDKMLIDNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEVGDGTTTVVILAA
ELLKRANELVARKVHPTVIISGFRLACTEAIKYINETLAVKVETLPKDFIVNIAKTSMSS
KTINDDSDFFSKIVIEAITRVKTIDYKGDVKYP---

---DTTALGIADEVVQDRLADDELIIVKNSNKKSASIILRGANELMLDEMERSIHDSLCI
VKRTLESGTIVPGGGAVESALSIYLDNIAATMGSRKQLAISEFAESLLVVPKQLAVNAAL
DASDLVSKLKAYHHAAQTDPSKKSYAYSGLDLFNNKVRNNLEAGVLEPAIAKIKCIKFAT
ESAITILRIDDKITLNPREQQGGDHEGHGH*

Frame A:
tkrylytsniflyielkf*kknvkqgind*w*syqw**s*stkcfssysnckys*niiwt
nwfr*nvn**ywinccyq*wcnhftkd*yrtssskdfstiiriarsrsw*wynyscnfss
riietcq*igst*stsnsyy*wf*ismyrsnqiyqrniss*s*nltkgfhckhcqdinvi
kdhq*r**flfkdch*gnhscenhrlqr*rkis---

---*yhrlgycr*scsr*igr**inhcqklk*eisfnhsswcq*invg*ngtfhs*lsly
rkenfriwnhcsrwwcs*icplylsr*ycrhng*s*tisnl*ic*iplgctktigckccs
*cl*fsfkikslsscrsn*sikeilrilwsrfiq*qs*k*frgwcfrtchcqnqmyqicn
*kryhhpsyr**nhs*skrttrw*s*rswtl

Frame B:
pndiyihpiyfyiln*NFKKRMSNKVLMIDGDRISGNEVRAQNVLAVTAIANIVKTSFGP
IGLDKMLIDNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEVGDGTTTVVILAA
ELLKRANELVARKVHPTVIISGFRLACTEAIKYINETLAVKVETLPKDFIVNIAKTSMSS
KTINDDSDFFSKIVIEAITRVKTIDYKGDVKYP---

---DTTALGIADEVVQDRLADDELIIVKNSNKKSASIILRGANELMLDEMERSIHDSLCI
VKRTLESGTIVPGGGAVESALSIYLDNIAATMGSRKQLAISEFAESLLVVPKQLAVNAAL
DASDLVSKLKAYHHAAQTDPSKKSYAYSGLDLFNNKVRNNLEAGVLEPAIAKIKCIKFAT
ESAITILRIDDKITLNPREQQGGDHEGHGH*

Frame C:
qtifiyiqyifiy*ikilkkecqtry**lmvivsvvmklehkmf*qlqqlqi*lkhhldq
lv*ikc*liildqlllpmmvqpfykrli*niqqqrf*ynyqnckikklvmvqlql*f*qq
ny*nvpmnw*hvkyiqqlllvvld*hvqkqsnistkh*qlklkpyqrisl*tlprhqchq
rpsmtivisfqrlslrqslv*kpsitkvt*ni---

---ipppwvlpmklfkidwpmmn*slsktqirnqlqsffvvpmn*cwmkwnvpfmtlsvs
*rel*nleplfqvvvqlnlpslsisiilppqwvvvnn*qslnllnpswlyqnnwl*mlll
mpli*fqn*kpiimplklihqrnlthtlvsiysitkleii*rlvf*nlplpksnvsnlql
kalspsfvsmikslliqennkvvimkvmdik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AG03 (FC-AG03Q) /CSM/FC/FC-AG/FC-AG03Q.Seq.d/                     2428   0.0
FC-116 (FC-116Q) /CSM/CG/CG-FC/FC-116Q.Seq.d/                        2428   0.0
AHI886 (AHI886Q) /CSM/AH/AHI8-D/AHI886Q.Seq.d/                       1227   0.0
SSE495 (SSE495Q) /CSM/SS/SSE4-D/SSE495Q.Seq.d/                       1189   0.0
VFL307 (VFL307Q) /CSM/VF/VFL3-A/VFL307Q.Seq.d/                       1183   0.0
VFD589 (VFD589Q) /CSM/VF/VFD5-D/VFD589Q.Seq.d/                       1183   0.0
CFH434 (CFH434Q) /CSM/CF/CFH4-B/CFH434Q.Seq.d/                       1183   0.0
AFG366 (AFG366Q) /CSM/AF/AFG3-C/AFG366Q.Seq.d/                       1183   0.0
AFF451 (AFF451Q) /CSM/AF/AFF4-C/AFF451Q.Seq.d/                       1183   0.0
AFD439 (AFD439Q) /CSM/AF/AFD4-B/AFD439Q.Seq.d/                       1183   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB008158|AB008158.1 Dictyostelium discoideum DdTcp-1 mRNA for t-complex polypeptide 1 homologue, complete cds.  1241  0.0  3
AZ530054|AZ530054.1 ENTDW96TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    66  2e-16  3
AZ526360|AZ526360.1 254PbF04 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    70  2e-14  3
AZ522254|AZ522254.1 204PbE04 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    68  1e-12  2
BF298951|BF298951.1 068PbG10 Pb cDNA #20, Charles Yowell and Jane Carlton Plasmodium berghei cDNA 5', mRNA sequence.    68  1e-12  2
BF299139|BF299139.1 069PbF12 Pb cDNA #20, Charles Yowell and Jane Carlton Plasmodium berghei cDNA 5', mRNA sequence.    68  1e-12  2
AL437502|AL437502.1 T3 end of clone BC0AA009G02 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    48  3e-10  4
AF143494|AF143494.1 Xenopus laevis t-complex polypeptide 1 (TCP1) mRNA, complete cds.    48  9e-09  5
U43123|U43123.1 Naegleria fowleri T-complex polypeptide homolog mRNA, partial cds.    38  8e-08  4
AF143496|AF143496.1 Paleosuchus palpebrosus t-complex polypeptide 1 (TCP1) mRNA, complete cds.    38  4e-07  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB008158_1(AB008158|pid:none) Dictyostelium discoideum DdTcp-1 m...   371   e-101
AF442545_1(AF442545|pid:none) Physarum polycephalum CCT chaperon...   281   4e-74
BT002052_1(BT002052|pid:none) Arabidopsis thaliana t-complex pol...   258   3e-67
AP000383_4(AP000383|pid:none) Arabidopsis thaliana genomic DNA, ...   252   2e-65
(P18279) RecName: Full=T-complex protein 1 subunit alpha;       ...   252   2e-65
EU966804_1(EU966804|pid:none) Zea mays clone 297510 unknown mRNA.     251   5e-65
EU965648_1(EU965648|pid:none) Zea mays clone 287725 T-complex pr...   251   5e-65
(P28480) RecName: Full=T-complex protein 1 subunit alpha;       ...   249   1e-64
AC152752_1(AC152752|pid:none) Medicago truncatula clone mth2-89c...   249   1e-64
AY891878_1(AY891878|pid:none) Synthetic construct Homo sapiens c...   249   1e-64

 psg: 0.57  gvh: 0.40  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 28.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for FC-AG03 is cyt

>FC-AG03F.Seq
ACCAAACGATATTTATATACATCCAATATATTTTTATATATTGAATTAAAATTTTAAAAA
AAGAATGTCAAACAAGGTATTAATGATTGATGGTGATCGTATCAGTGGTAATGAAGTTAG
AGCACAAAATGTTTTAGCAGTTACAGCAATTGCAAATATAGTTAAAACATCATTTGGACC
AATTGGTTTAGATAAAATGTTAATTGATAATATTGGATCAATTGTTGTTACCAATGATGG
TGCAACCATTTTACAAAAGATTGATATAGAACATCCAGCAGCAAAGATTTTAGTACAATT
ATCAGAATTGCAAGATCAAGAAGTTGGTGATGGTACAACTACAGTTGTAATTTTAGCAGC
AGAATTATTGAAACGTGCCAATGAATTGGTAGCACGTAAAGTACATCCAACAGTTATTAT
TAGTGGTTTTAGATTAGCATGTACAGAAGCAATCAAATATATCAACGAAACATTAGCAGT
TAAAGTTGAAACCTTACCAAAGGATTTCATTGTAAACATTGCCAAGACATCAATGTCATC
AAAGACCATCAATGACGATAGTGATTTCTTTTCAAAGATTGTCATTGAGGCAATCACTCG
TGTGAAAACCATCGATTACAAAGGTGACGTAAAATATCCA----------

>FC-AG03Z.Seq
----------TGATACCACCGCCTTGGGTATTGCCGATGAAGTTGTTCAAGATAGATTGG
CCGATGATGAATTAATCATTGTCAAAAACTCAAATAAGAAATCAGCTTCAATCATTCTTC
GTGGTGCCAATGAATTAATGTTGGATGAAATGGAACGTTCCATTCATGACTCTCTCTGTA
TCGTAAAGAGAACTTTAGAATCTGGAACCATTGTTCCAGGTGGTGGTGCAGTTGAATCTG
CCCTCTCTATCTATCTCGATAATATTGCCGCCACAATGGGTAGTCGTAAACAATTAGCAA
TCTCTGAATTTGCTGAATCCCTCTTGGTTGTACCAAAACAATTGGCTGTAAATGCTGCTC
TTGATGCCTCTGATTTAGTTTCAAAATTAAAAGCCTATCATCATGCCGCTCAAACTGATC
CATCAAAGAAATCTTACGCATACTCTGGTCTCGATTTATTCAATAACAAAGTTAGAAATA
ATTTAGAGGCTGGTGTTTTAGAACCTGCCATTGCCAAAATCAAATGTATCAAATTTGCAA
CTGAAAGCGCTATCACCATCCTTCGTATCGATGATAAAATCACTCTTAATCCAAGAGAAC
AACAAGGTGGTGATCATGAAGGTCATGGACATTAAA

>FC-AG03P.Seq
ACCAAACGATATTTATATACATCCAATATATTTTTATATATTGAATTAAAATTTTAAAAA
AAGAATGTCAAACAAGGTATTAATGATTGATGGTGATCGTATCAGTGGTAATGAAGTTAG
AGCACAAAATGTTTTAGCAGTTACAGCAATTGCAAATATAGTTAAAACATCATTTGGACC
AATTGGTTTAGATAAAATGTTAATTGATAATATTGGATCAATTGTTGTTACCAATGATGG
TGCAACCATTTTACAAAAGATTGATATAGAACATCCAGCAGCAAAGATTTTAGTACAATT
ATCAGAATTGCAAGATCAAGAAGTTGGTGATGGTACAACTACAGTTGTAATTTTAGCAGC
AGAATTATTGAAACGTGCCAATGAATTGGTAGCACGTAAAGTACATCCAACAGTTATTAT
TAGTGGTTTTAGATTAGCATGTACAGAAGCAATCAAATATATCAACGAAACATTAGCAGT
TAAAGTTGAAACCTTACCAAAGGATTTCATTGTAAACATTGCCAAGACATCAATGTCATC
AAAGACCATCAATGACGATAGTGATTTCTTTTCAAAGATTGTCATTGAGGCAATCACTCG
TGTGAAAACCATCGATTACAAAGGTGACGTAAAATATCCA----------TGATACCACC
GCCTTGGGTATTGCCGATGAAGTTGTTCAAGATAGATTGGCCGATGATGAATTAATCATT
GTCAAAAACTCAAATAAGAAATCAGCTTCAATCATTCTTCGTGGTGCCAATGAATTAATG
TTGGATGAAATGGAACGTTCCATTCATGACTCTCTCTGTATCGTAAAGAGAACTTTAGAA
TCTGGAACCATTGTTCCAGGTGGTGGTGCAGTTGAATCTGCCCTCTCTATCTATCTCGAT
AATATTGCCGCCACAATGGGTAGTCGTAAACAATTAGCAATCTCTGAATTTGCTGAATCC
CTCTTGGTTGTACCAAAACAATTGGCTGTAAATGCTGCTCTTGATGCCTCTGATTTAGTT
TCAAAATTAAAAGCCTATCATCATGCCGCTCAAACTGATCCATCAAAGAAATCTTACGCA
TACTCTGGTCTCGATTTATTCAATAACAAAGTTAGAAATAATTTAGAGGCTGGTGTTTTA
GAACCTGCCATTGCCAAAATCAAATGTATCAAATTTGCAACTGAAAGCGCTATCACCATC
CTTCGTATCGATGATAAAATCACTCTTAATCCAAGAGAACAACAAGGTGGTGATCATGAA
GGTCATGGACATTAAA