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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AF12
Library FC
(Link to library)
Clone ID FC-AF12
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16529-1
Original site URL
Representative seq. ID FC-AF12E
(Link to Original site)
Representative DNA sequence 
>FC-AF12 (FC-AF12Q) /CSM/FC/FC-AF/FC-AF12Q.Seq.d/
TACCAAGTTGATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCA
AAACTTACTCCACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACA
CCATATGACTATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAA
GTTACAGTTATTAAAAAAGATGAGACATTCCCAAAGAATATGACTGTTACACAAGATGAT
AATACATCTTTCATCTTTAACTTAAACTCTGAAAAATAAAACAATATGTTTTTTTTTCTC
TTTAAGAAAAAAAA
sequence update 1996.12.30
Translated Amino Acid sequence 
YQVDKVACKDGDDFVQLPIPKLTPPDSEIVSHLTVRQTHTPYDYVVNGSVYFKYSPTTGQ
VTVIKKDETFPKNMTVTQDDNTSFIFNLNSEK*nnmffflfkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
YQVDKVACKDGDDFVQLPIPKLTPPDSEIVSHLTVRQTHTPYDYVVNGSVYFKYSPTTGQ
VTVIKKDETFPKNMTVTQDDNTSFIFNLNSEK*nnmffflfkkk


Frame B:
tklirllakmvmtlfncqfqnllhqilkllai*qfvkhihhmtml*mevftlntpqqlak
lqllkkmrhsqri*llhkmiihlsslt*tlknkticfffslrkk


Frame C:
ps**gclqrw**lcsiansktystrf*nc*pfnsssntyti*lcckwkcll*ilpnnwps
ysy*kr*dipkeydcytr**yifhl*lkl*kikqyvffsl*ekk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ503 (VSJ503Q) /CSM/VS/VSJ5-A/VSJ503Q.Seq.d/                        571   e-162
VSC180 (VSC180Q) /CSM/VS/VSC1-D/VSC180Q.Seq.d/                        571   e-162
VSB653 (VSB653Q) /CSM/VS/VSB6-C/VSB653Q.Seq.d/                        571   e-162
VFJ167 (VFJ167Q) /CSM/VF/VFJ1-C/VFJ167Q.Seq.d/                        571   e-162
VFH364 (VFH364Q) /CSM/VF/VFH3-C/VFH364Q.Seq.d/                        571   e-162
SSM611 (SSM611Q) /CSM/SS/SSM6-A/SSM611Q.Seq.d/                        571   e-162
SSM310 (SSM310Q) /CSM/SS/SSM3-A/SSM310Q.Seq.d/                        571   e-162
SSK866 (SSK866Q) /CSM/SS/SSK8-C/SSK866Q.Seq.d/                        571   e-162
SSK613 (SSK613Q) /CSM/SS/SSK6-A/SSK613Q.Seq.d/                        571   e-162
SSK494 (SSK494Q) /CSM/SS/SSK4-D/SSK494Q.Seq.d/                        571   e-162
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U49650|U49650.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 DdCAD-1 (cadA) mRNA, complete cds.   553   e-154  1
U20997|U20997.1 Dictyostelium discoideum putative 25 kDa protein mRNA, partial cds.   430   e-153  2
AF340153|AF340153.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 (cadA) gene, complete cds.   309   e-152  2
BX649254|BX649254.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42   0.001  2
AL844141|AL844141.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-30K6.    40   0.029  5
BX323073|BX323073.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38   0.16   4
AC124492|AC124492.4 Mus musculus chromosome 12 clone RP23-454I23, complete sequence.    46   0.27   1
BX510310|BX510310.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-154F24.    38   0.28   6
AC010366|AC010366.6 Homo sapiens chromosome 5 clone CTD-2044J15, complete sequence.    32   0.78   4
AC116676|AC116676.3 Mus musculus clone RP23-22C3, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36   1.0    5
dna update 2003.11.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...   191   7e-48
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...   153   2e-36
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso...    72   5e-12
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a...    35   1.1
CP000155_2836(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    32   7.0
AE014187_514(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    32   7.0
CP000383_1880(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    32   7.0
FN392320_262(FN392320|pid:none) Pichia pastoris GS115 chromosome...    32   9.1
(A4YIG5) RecName: Full=Cysteinyl-tRNA synthetase;          EC=6....    32   9.1
CU207366_264(CU207366|pid:none) Gramella forsetii KT0803 complet...    32   9.1
protein update 2009. 7. 2
PSORT 

 psg: 0.62  gvh: 0.37  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for FC-AF12 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AF12E
Full length Seq. 
>FC-AF12E.Seq
TACCAAGTTGATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCA
AAACTTACTCCACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACA
CCATATGACTATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAA
GTTACAGTTATTAAAAAAGATGAGACATTCCCAAAGAATATGACTGTTACACAAGATGAT
AATACATCTTTCATCTTTAACTTAAACTCTGAAAAATAAAACAATATGTTTTTTTTTCTC
TTTAAGAAAAAAAA
Length of full length seq. 314