FC-AF03
Library FC
(Link to library)
Clone ID FC-AF03
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15758-1|Contig-U15821-1
Original site URL
Representative seq. ID FC-AF03P
(Link to Original site)
Representative DNA sequence
>FC-AF03 (FC-AF03Q) /CSM/FC/FC-AF/FC-AF03Q.Seq.d/
GAAAAAATTTCTTTGATGATGATGTGATGATATTGTTTGTTGTTGACGGTATGGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGATAATATTGTTGTTGCTGTCTTTGTTGGTGATACTGTTGTTGTTGAGATTG
TTGTTGAGATTGTTGTTGTTGTTGTTGTTGTTGAGATTGTTGTTGTTGTTGTTGTTGTTG
ATATTGAGGTGCATGGTGTATATGATGCACATGATGCACGTGGTGAACATGATGATGATG
CACAACTTGTTGATGTGCTTGTAAGTGCATTTGTACTAATTGACTTCCATGACTGTTATT
AAAATGTTGTTGGTGGTGTTGTTGTAAAGGCAATGATGCATTATTATTATTATTCCCATT
ATTATTATTATTATTATTAATATTAATATTATTATTGTTATTATTACTATTATTATTATT
GTTACTATTATTAATGCTACTATTACTATGAATATTATTGCTACTACTATTATTACTATT
ATTGTTATTATTACXXXXXXXXXXTATTATTATTACTATTATTATTATTATTACTATTAT
TGTTATTGTTATTATTATTATTATTATTATTATTTAAAAATATATTATGGTGTTGTTGAT
GTTGTGAATGATGAATATTATGAGGATGATTATGTTGGTGAAATTGATGGTGAGGTGGTT
GCATTAAAATTTGTTGATGGAGTTGTTGATGGAGTTGTTGATGTATTTGTTGCATACTTC
TAAGATTTCGAAGATTTTCAATATTCTCATTATTATTTAAATTCCTTCGACTCATTTTTT
GTTTTGTTTTTTTTTTTTTTTTTTCTTTAATTTATTCCAAACAAAAAAATAAAA
sequence update 1997. 2.12
Translated Amino Acid sequence
ekislmmm**ycllltvwllllllllllllllllllllllllliillllsllvillllrl
llrllllllllrllllllllilrcmvymmhmmhvvnmmmmhnllmcl*vhly*ltsmtvi
kmllvvll*rq*CIIIIIPIIIIIIININIIIVIITIIIIVTIINATITMNIIATTIITI
IVII---

---YYYYYYYYYYYYCYCYYYYYYYYLKIYYGVVDVVNDEYYEDDYVGEIDGEVVALKFV
DGVVDGVVDVFVAYF*dfedfqyshyylnsfdsffvlffffffl*fipnkkik


Translated Amino Acid sequence (All Frames)
Frame A:
ekislmmm**ycllltvwllllllllllllllllllllllllliillllsllvillllrl
llrllllllllrllllllllilrcmvymmhmmhvvnmmmmhnllmcl*vhly*ltsmtvi
kmllvvll*rq*CIIIIIPIIIIIIININIIIVIITIIIIVTIINATITMNIIATTIITI
IVII---

---YYYYYYYYYYYYCYCYYYYYYYYLKIYYGVVDVVNDEYYEDDYVGEIDGEVVALKFV
DGVVDGVVDVFVAYF*dfedfqyshyylnsfdsffvlffffffl*fipnkkik

Frame B:
kkfl***cddivcc*rygcccccccccccccccccccccccc**ycccclcw*yccc*dc
c*dccccccc*dccccccc*y*gawci*ct*ctw*t***cttc*cackcictn*lp*lll
kccwwccckgndallllfplllllllililllllllllllllllmllll*illlllllll
llll---

---iiitiiiiitiiviviiiiiiii*kyimvllml*mmnimrmimlvklmvrwlh*nll
mellmellmyllhtskiskifniliii*ipsthflfcfffffffnlfqtkk*

Frame C:
knffdddvmilfvvdgmvvvvvvvvvvvvvvvvvvvvvvvvvdnivvavfvgdtvvveiv
veivvvvvvveivvvvvvvdievhgvydahdargehdddaqlvdvlvsafvlidfhdcy*
nvvggvvvkammhyyyyshyyyyyy*y*yyycyyyyyyycyyy*cyyyyeyycyyyyyyy
cyyy---

---llllllllllllllllllllllfknilwcc*cce**il*g*lcw*n*w*ggcikic*
wsc*wsc*ciccillrfrrfsifsllfkflrlifcfvfffffsliyskqknk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AF03 (FC-AF03Q) /CSM/FC/FC-AF/FC-AF03Q.Seq.d/ 369 e-101
VHM693 (VHM693Q) /CSM/VH/VHM6-D/VHM693Q.Seq.d/ 58 2e-07
VHH739 (VHH739Q) /CSM/VH/VHH7-B/VHH739Q.Seq.d/ 58 2e-07
VHH362 (VHH362Q) /CSM/VH/VHH3-C/VHH362Q.Seq.d/ 58 2e-07
VHG334 (VHG334Q) /CSM/VH/VHG3-B/VHG334Q.Seq.d/ 58 2e-07
VHE410 (VHE410Q) /CSM/VH/VHE4-A/VHE410Q.Seq.d/ 58 2e-07
VHQ342 (VHQ342Q) /CSM/VH/VHQ3-B/VHQ342Q.Seq.d/ 50 6e-05
VHQ124 (VHQ124Q) /CSM/VH/VHQ1-A/VHQ124Q.Seq.d/ 50 6e-05
VHP441 (VHP441Q) /CSM/VH/VHP4-B/VHP441Q.Seq.d/ 50 6e-05
VHO304 (VHO304Q) /CSM/VH/VHO3-A/VHO304Q.Seq.d/ 50 6e-05

own update 2005. 1. 1
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF019984|AF019984.1 Dictyostelium discoideum FusC (fusC) gene, partial cds. 58 1e-07 3
AB050503|AB050503.1 Dictyostelium discoideum GP138D gene for DdFRP1 alpha, complete cds. 58 3e-07 3
AB016609|AB016609.1 Dictyostelium discoideum gene for gp138, complete cds. 52 3e-04 2
D12884|D12884.1 Dictyostelium discoideum GP138B gene for cell surface glycoprotein gp138, complete cds. 50 0.001 2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 46 0.002 6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 36 0.014 8
AY160094|AY160094.1 Dictyostelium discoideum nucleotide exchange factor RasGEF E (gefE) gene, complete cds. 32 0.024 4
D12883|D12883.1 Dictyostelium discoideum GP138A gene for cell surface glycoprotein gp138, complete cds. 50 0.046 3
AB050504|AB050504.1 Dictyostelium discoideum GP138-1 pseudogene. 50 0.046 2
AJ301670|AJ301670.1 Dictyostelium discoideum mRNA for STATc transcriptional repressor (dstC gene). 34 0.085 3
dna update 2003. 7.11
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 269,340,016
protein update 2009. 4.13
PSORT

psg: 0.75 gvh: 0.45 alm: 0.07 top: 0.33 tms: 0.27 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: plasma membrane
8.0 %: nuclear
8.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for FC-AF03 is end

5' end seq. ID FC-AF03F
5' end seq.
>FC-AF03F.Seq
GAAAAAATTTCTTTGATGATGATGTGATGATATTGTTTGTTGTTGACGGTATGGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGATAATATTGTTGTTGCTGTCTTTGTTGGTGATACTGTTGTTGTTGAGATTG
TTGTTGAGATTGTTGTTGTTGTTGTTGTTGTTGAGATTGTTGTTGTTGTTGTTGTTGTTG
ATATTGAGGTGCATGGTGTATATGATGCACATGATGCACGTGGTGAACATGATGATGATG
CACAACTTGTTGATGTGCTTGTAAGTGCATTTGTACTAATTGACTTCCATGACTGTTATT
AAAATGTTGTTGGTGGTGTTGTTGTAAAGGCAATGATGCATTATTATTATTATTCCCATT
ATTATTATTATTATTATTAATATTAATATTATTATTGTTATTATTACTATTATTATTATT
GTTACTATTATTAATGCTACTATTACTATGAATATTATTGCTACTACTATTA TTACTAT
TATTGTTATTATTAC----------
Length of 5' end seq. 555
3' end seq. ID FC-AF03Z
3' end seq.
>FC-AF03Z.Seq
----------TATTATTATTACTATTATTATTATTATTACTATTATTGTTATTGTTATTA
TTATTATTATTATTATTATTTAAAAATATATTATGGTGTTGTTGATGTTGTGAATGATGA
ATATTATGAGGATGATTATGTTGGTGAAATTGATGGTGAGGTGGTTGCATTAAAATTTGT
TGATGGAGTTGTTGATGGAGTTGTTGATGTATTTGTTGCATACTTCTAAGATTTCGAAGA
TTTTCAATATTCTCATTATTATTTAAATTCCTTCGACTCATTTTTTGTTTTGTTTTTTTT
TTTTTTTTTTCTTTAATTTATTCCAAACAAAAAAATAAAA
Length of 3' end seq. 330
Connected seq. ID FC-AF03P
Connected seq.
>FC-AF03P.Seq
GAAAAAATTTCTTTGATGATGATGTGATGATATTGTTTGTTGTTGACGGTATGGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGATAATATTGTTGTTGCTGTCTTTGTTGGTGATACTGTTGTTGTTGAGATTG
TTGTTGAGATTGTTGTTGTTGTTGTTGTTGTTGAGATTGTTGTTGTTGTTGTTGTTGTTG
ATATTGAGGTGCATGGTGTATATGATGCACATGATGCACGTGGTGAACATGATGATGATG
CACAACTTGTTGATGTGCTTGTAAGTGCATTTGTACTAATTGACTTCCATGACTGTTATT
AAAATGTTGTTGGTGGTGTTGTTGTAAAGGCAATGATGCATTATTATTATTATTCCCATT
ATTATTATTATTATTATTAATATTAATATTATTATTGTTATTATTACTATTATTATTATT
GTTACTATTATTAATGCTACTATTACTATGAATATTATTGCTACTACTATTATTACTATT
ATTGTTATTATTAC----------TATTATTATTACTATTATTATTATTATTACTATTAT
TGTTATTGTTATTATTATTATTATTATTATTATTTAAAAATATATTATGGTGTTGTTGAT
GTTGTGAATGATGAATATTATGAGGATGATTATGTTGGTGAAATTGATGGTGAGGTGGTT
GCATTAAAATTTGTTGATGGAGTTGTTGATGGAGTTGTTGATGTATTTGTTGCATACTTC
TAAGATTTCGAAGATTTTCAATATTCTCATTATTATTTAAATTCCTTCGACTCATTTTTT
GTTTTGTTTTTTTTTTTTTTTTTTCTTTAATTTATTCCAAACAAAAAAATAAAA
Length of connected seq. 884
Full length Seq ID -
Full length Seq. -
Length of full length seq. -