>FC-AE16 (FC-AE16Q) /CSM/FC/FC-AE/FC-AE16Q.Seq.d/
AAATGCCAATTCACAACAAAGTCTTAAGTAACGACCATTTCCGTAAACACTGGCAAATGC
GTGTTAGAACCTGGTTCAACCAACCAGCACGTAAGATCAGAAGAAGAAATAACAGAATCG
AAAAAGCTGCTAAAGTATTCCCAAGACCAATTGCCACCTTAAAACCAGTTGTTCGTGGTT
CAACCATCAGATACAACATGAAAGTTAGAGCTGGTCGTGGTTTCACCTTAGAGGAATTAA
AGGCTGCTGGTTTAACTGCTCAATACGCCAGAACCATCGGTATTGCTGTTGATACTCGTC
GTGTAAACAAAACCCAACAATCTTTAACCTTAAATACTCAACGTTTAAAGAACTACCAAT
CTAAACTCGTTCTTTTCCCACGTAAAGTCAATGCACCAAAGAAGGGTGAAGCCACCAAGG
AAGAAGTTGCTAAAGCTGTCCAAACCCTCAAACCATTCACTGTTAAATCCGCCATCGCCG
TTACTTGTGAACAAACCCCACGTAAACCAACTGAAGCTGAAAAGAAATTCTCTGCCTATG
CCACCCTCAAAGCTGCTGACTCCAAAGCCAAGACTGTTGGTATCAGAAGAAAGGCTGCTG
AAATCAAAGCTGCCAAAGCTGCTGAAAAATAAACTCTTTAATAGTTTTAAAAATGAAAAA
AAAAAAAAAAAA

MPIHNKVLSNDHFRKHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIATLKPVVRGS
TIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQS
KLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYA
TLKAADSKAKTVGIRRKAAEIKAAKAAEK*tl**f*k*kkkkk

Frame A:
kcqfttks*vttisvntgkcvlepgstnqhvrseeeiteskkllkysqdqlpp*nqlfvv
qpsdtt*klelvvvsp*rn*rllv*llntpepsvlllilvv*tkpnnl*p*ilnv*rttn
lnsffshvksmhqrrvkpprkkllklskpsnhsllnppspllvnkphvnqlklkrnslpm
ppsklltpkprllvseerllksklpkllknklfnsfknekkkkk


Frame B:
nansqqslk*rpfp*tlanac*nlvqptst*dqkkk*qnrksc*sipktnchlktscswf
nhqiqhes*swswfhlrgikgcwfncsirqnhrycc*yssckqnptifnlkystfkelpi
*trsfpt*sqctkeg*shqgrsc*scpnpqtihc*irhrryl*tnpt*tn*s*keilclc
hpqsc*lqsqdcwyqkkgc*nqscqsc*kinslivlkmkkkkk


Frame C:
MPIHNKVLSNDHFRKHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIATLKPVVRGS
TIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQS
KLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYA
TLKAADSKAKTVGIRRKAAEIKAAKAAEK*tl**f*k*kkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AE16 (FC-AE16Q) /CSM/FC/FC-AE/FC-AE16Q.Seq.d/                     1298   0.0
FC-099 (FC-099Q) /CSM/CG/CG-FC/FC-099Q.Seq.d/                        1298   0.0
VSF395 (VSF395Q) /CSM/VS/VSF3-D/VSF395Q.Seq.d/                       1239   0.0
FC-BO22 (FC-BO22Q) /CSM/FC/FC-BO/FC-BO22Q.Seq.d/                     1239   0.0
VSG128 (VSG128Q) /CSM/VS/VSG1-B/VSG128Q.Seq.d/                       1211   0.0
VSJ876 (VSJ876Q) /CSM/VS/VSJ8-D/VSJ876Q.Seq.d/                       1209   0.0
VSH659 (VSH659Q) /CSM/VS/VSH6-C/VSH659Q.Seq.d/                       1189   0.0
VSJ414 (VSJ414Q) /CSM/VS/VSJ4-A/VSJ414Q.Seq.d/                       1176   0.0
VSI517 (VSI517Q) /CSM/VS/VSI5-A/VSI517Q.Seq.d/                       1170   0.0
VHG289 (VHG289Q) /CSM/VH/VHG2-D/VHG289Q.Seq.d/                       1160   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY144954|AY144954.1 Saccharomyces castellii clone Contig1629 RPL13 gene, partial cds.    58   6e-11  3
AL402736|AL402736.1 T7 end of clone AT0AA004C12 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii.    50   1e-10  3
Z47071|Z47071.1 S.cerevisiae chromosome XIII cosmid 9375.          74   5e-10  3
AY145049|AY145049.1 Kluyveromyces lactis clone P2258 RPL13 gene, complete cds.    68   1e-09  2
AY144953|AY144953.1 Saccharomyces castellii clone Contig2037 RPL13 gene, partial cds.    66   2e-09  2
BZ299426|BZ299426.1 KD0146.R1 Kluyveromyces delphensis Random Genomic Library Kluyveromyces delphensis genomic clone KD0146, DNA sequence.    50   3e-09  2
AY144853|AY144853.1 Saccharomyces bayanus clone Contig4022 RPL13 gene, complete cds.    66   3e-09  2
AL402820|AL402820.1 T7 end of clone AT0AA004H07 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii.    50   3e-08  3
AL429848|AL429848.1 clone BA0AB034A12 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    44   5e-08  2
AY145015|AY145015.1 Saccharomyces kluyveri clone P2220 RPL13 gene, complete cds.    68   2e-07  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E20) RecName: Full=60S ribosomal protein L13;                     346   3e-94
(Q90YV5) RecName: Full=60S ribosomal protein L13;  &AF401567_1(A...   188   1e-46
BT043698_1(BT043698|pid:none) Salmo salar clone HM5_2256 ribosom...   176   4e-43
BT082580_1(BT082580|pid:none) Anoplopoma fimbria clone afim-evh-...   176   7e-43
BT058587_1(BT058587|pid:none) Salmo salar clone Contig2246 60S r...   175   1e-42
(Q90Z10) RecName: Full=60S ribosomal protein L13;  &AF385081_1(A...   174   2e-42
AY961553_1(AY961553|pid:none) Lysiphlebus testaceipes ribosomal ...   172   6e-42
EU302538_1(EU302538|pid:none) Lineus viridis ribosomal protein r...   172   1e-41
AY395689_1(AY395689|pid:none) Solanum brevidens 60S ribosomal pr...   171   1e-41
BC041531_1(BC041531|pid:none) Xenopus laevis mRNA similar to rib...   169   5e-41

 psg: 0.52  gvh: 0.42  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.53  mip: 0.12
 nuc: 0.17  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: cytoplasmic
	 16.0 %: mitochondrial

>> prediction for FC-AE16 is cyt

>FC-AE16E.Seq
AAATGCCAATTCACAACAAAGTCTTAAGTAACGACCATTTCCGTAAACACTGGCAAATGC
GTGTTAGAACCTGGTTCAACCAACCAGCACGTAAGATCAGAAGAAGAAATAACAGAATCG
AAAAAGCTGCTAAAGTATTCCCAAGACCAATTGCCACCTTAAAACCAGTTGTTCGTGGTT
CAACCATCAGATACAACATGAAAGTTAGAGCTGGTCGTGGTTTCACCTTAGAGGAATTAA
AGGCTGCTGGTTTAACTGCTCAATACGCCAGAACCATCGGTATTGCTGTTGATACTCGTC
GTGTAAACAAAACCCAACAATCTTTAACCTTAAATACTCAACGTTTAAAGAACTACCAAT
CTAAACTCGTTCTTTTCCCACGTAAAGTCAATGCACCAAAGAAGGGTGAAGCCACCAAGG
AAGAAGTTGCTAAAGCTGTCCAAACCCTCAAACCATTCACTGTTAAATCCGCCATCGCCG
TTACTTGTGAACAAACCCCACGTAAACCAACTGAAGCTGAAAAGAAATTCTCTGCCTATG
CCACCCTCAAAGCTGCTGACTCCAAAGCCAAGACTGTTGGTATCAGAAGAAAGGCTGCTG
AAATCAAAGCTGCCAAAGCTGCTGAAAAATAAACTCTTTAATAGTTTTAAAAATGAAAAA
AAAAAAAAAAAA