FC-AE05
Library FC
(Link to library)
Clone ID FC-AE05
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16208-1
Original site URL
Representative seq. ID FC-AE05E
(Link to Original site)
Representative DNA sequence
>FC-AE05 (FC-AE05Q) /CSM/FC/FC-AE/FC-AE05Q.Seq.d/
AACAACAACAACATTATAATCAAAGTAATTTAAAGGGTATGAAAGTTGGTAATGATATTA
AATATTTTGAAGATGAAAATGAACATATTTTAACTTTACAAGATTCAAGTGTATTAGAAG
ATTCTGAGGATGTATTGATAAATGTTAATTTAACAGAGAAAGAAAAAAGAGAGAAACAAT
TACAATCAAATAAAAAGAAATCAAAATTTGATAGATATGATGATTTTGGTGAACATAAAG
GTGGAATTTTAAGTGACTATAGTGATGATGATGGTGATGTTGTTGATAATGGTTTCATTT
TAGGTAATGATGGTAAATTCGATAAAGATTCATCATCCATAGGTCAAAATGGACTATCAT
TAAAAGATCAAGCTAAAAAGAATTTAGAATCTTATAATATGGAAGATAATACAACTACAA
GTATATTATCCTCATTCTATACTCAAGAAGAGATGGAAAGATTTAAAAAGAATCGTCAAT
CATCATCAACAACAACAAAGACTGGTAGTTCAACAGCAGCAACAGCAACAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1996.11.13
Translated Amino Acid sequence
QQQHYNQSNLKGMKVGNDIKYFEDENEHILTLQDSSVLEDSEDVLINVNLTEKEKREKQL
QSNKKKSKFDRYDDFGEHKGGILSDYSDDDGDVVDNGFILGNDGKFDKDSSSIGQNGLSL
KDQAKKNLESYNMEDNTTTSILSSFYTQEEMERFKKNRQSSSTTTKTGSSTAATATKKKK
KKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
nnnniiikvi*rv*klvmilnilkmkmnif*lykiqvy*kilrmy**mli*qrkkkernn
ynqikrnqnlidmmilvnikvef*vtivmmmvmllimvsf*vmmvnsikihhp*vkmdyh
*kiklkri*nliiwkiiqlqvyyphsilkkrwkdlkrivnhhqqqqrlvvqqqqqqqkkk
kkkkkkkkkkkkk


Frame B:
ttttl*sk*fkgyesw**y*if*r*k*tyfnftrfkcirrf*gcidkc*fnrerkkreti
tik*keiki**i**fw*t*rwnfk*l****w*cc**wfhfr**w*ir*rfiihrskwtii
krss*kefril*ygr*ynykyiililysrrdgki*kessiiinnnkdw*fnssnsnkkkk
kkkkkkkkkkkkk


Frame C:
QQQHYNQSNLKGMKVGNDIKYFEDENEHILTLQDSSVLEDSEDVLINVNLTEKEKREKQL
QSNKKKSKFDRYDDFGEHKGGILSDYSDDDGDVVDNGFILGNDGKFDKDSSSIGQNGLSL
KDQAKKNLESYNMEDNTTTSILSSFYTQEEMERFKKNRQSSSTTTKTGSSTAATATKKKK
KKKKKKKKKKKK


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AE05 (FC-AE05Q) /CSM/FC/FC-AE/FC-AE05Q.Seq.d/ 640 0.0
VSC863 (VSC863Q) /CSM/VS/VSC8-C/VSC863Q.Seq.d/ 303 2e-81
VSB834 (VSB834Q) /CSM/VS/VSB8-B/VSB834Q.Seq.d/ 303 2e-81
VHQ389 (VHQ389Q) /CSM/VH/VHQ3-D/VHQ389Q.Seq.d/ 44 0.002
VHN643 (VHN643Q) /CSM/VH/VHN6-B/VHN643Q.Seq.d/ 44 0.002
VHH651 (VHH651Q) /CSM/VH/VHH6-C/VHH651Q.Seq.d/ 44 0.002
VHB561 (VHB561Q) /CSM/VH/VHB5-C/VHB561Q.Seq.d/ 44 0.002
VFK294 (VFK294Q) /CSM/VF/VFK2-D/VFK294Q.Seq.d/ 44 0.002
SFH356 (SFH356Q) /CSM/SF/SFH3-C/SFH356Q.Seq.d/ 44 0.002
FCL-AC28 (FCL-AC28Q) /CSM/FCL/FCL-AC/FCL-AC28Q.Seq.d/ 44 0.002

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 44 1e-08 13
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 40 1e-08 12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 48 4e-08 13
AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence. 40 1e-07 7
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 42 4e-07 15
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 44 5e-07 11
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 42 6e-07 11
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 36 8e-07 12
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 36 1e-06 14
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 36 3e-06 11
dna update 2003.11.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC043853_1(BC043853|pid:none) Xenopus laevis similar to squamous... 74 2e-12
BC076544_1(BC076544|pid:none) Danio rerio squamous cell carcinom... 74 4e-12
AF299060_1(AF299060|pid:none) Tetraodon nigroviridis squamous-ce... 73 5e-12
AF042797_4(AF042797|pid:none) Takifugu rubripes FRG1 (FRG1), N-a... 71 2e-11
AX647131_1(AX647131|pid:none) Sequence 1323 from Patent EP1270724. 69 7e-11
AK223016_1(AK223016|pid:none) Homo sapiens mRNA for squamous cel... 68 2e-10
U97005_9(U97005|pid:none) Caenorhabditis elegans cosmid F19F10, ... 65 1e-09
T25713(T25713)hypothetical protein F19F10.9 - Caenorhabditis ele... 65 1e-09
FN357917_9(FN357917|pid:none) Schistosoma mansoni genome sequenc... 64 2e-09
BC028823_1(BC028823|pid:none) Mus musculus squamous cell carcino... 64 2e-09
protein update 2009. 7. 2
PSORT

psg: 0.63 gvh: 0.30 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.65 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: nuclear
16.0 %: cytoplasmic
4.0 %: mitochondrial

>> prediction for FC-AE05 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AE05E
Full length Seq.
>FC-AE05E.Seq
AACAACAACAACATTATAATCAAAGTAATTTAAAGGGTATGAAAGTTGGTAATGATATTA
AATATTTTGAAGATGAAAATGAACATATTTTAACTTTACAAGATTCAAGTGTATTAGAAG
ATTCTGAGGATGTATTGATAAATGTTAATTTAACAGAGAAAGAAAAAAGAGAGAAACAAT
TACAATCAAATAAAAAGAAATCAAAATTTGATAGATATGATGATTTTGGTGAACATAAAG
GTGGAATTTTAAGTGACTATAGTGATGATGATGGTGATGTTGTTGATAATGGTTTCATTT
TAGGTAATGATGGTAAATTCGATAAAGATTCATCATCCATAGGTCAAAATGGACTATCAT
TAAAAGATCAAGCTAAAAAGAATTTAGAATCTTATAATATGGAAGATAATACAACTACAA
GTATATTATCCTCATTCTATACTCAAGAAGAGATGGAAAGATTTAAAAAGAATCGTCAAT
CATCATCAACAACAACAAAGACTGGTAGTTCAACAGCAGCAACAGCAACAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 580