>FC-AE03 (FC-AE03Q) /CSM/FC/FC-AE/FC-AE03Q.Seq.d/
GTGGAACGGAACGTTATTAAGAAGAAGGTATCTACAGTATCATTTGATTTCCAACGACCC
ATCTTCTTAACAACGTGGAACGGAACGTTATTGGACAACAGCAGAGAAGCCATAGCGGAA
CGGGTAGAGTGAGATTTGAACTTGACAATATCAATACCTGACTTTGAGAGTGTTGATAGT
ACAATTGAGTTAATATCATTAACTTGGAGCGGTTCACCCTCATTCTTAATAAAGACAGAG
TCACCCGAATGGGGCTTTCTTCTTCCTTTAGAGGCTCTAAGGTATGTTGCAAGGTGGCGA
ACAGGGCATACTTGAGAGTTTGTATCATCTAACGATGTTAATTCTAATATTGAAACAACA
CCACTTCTTTGTTCTTTAGCATTAATAACTGGACCTTTAATTGAGTCAGTAGTAATAATG
AGACCTTTCAGTTTTTCGACCTTACACAATGATCGCGTCATTGTGCCGGTTCGAAATTTT
TACTTTTCTTTCGAAAATTTTTTTATTCTTCGAATGTTCTAGAACATTCTAAAAAATTAT
CTTAAATATTTGGGAAATTCAAATAAATAAATGTTATTCATAATATATATATATATXXXX
XXXXXXATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

gtery*eegiysii*fptthllnnvernvigqqqrshsgtgrvrfeldnint*l*ec**y
n*vniinlerftlilnkdrvtrmglsssfrgskvcckvanraylrvcii*rc*f*y*nnt
tslffsinnwtfn*vssnnetfqffdltq*srhcagskfllffrkffyssnvlehskkls
*ifgkfk*INVIHNIYIY---

---FKKKKKKKKKKKKKKKKKKKKKK

Frame A:
vernvikkkvstvsfdfqrpiflttwngtlldnsreaiaerve*dlnltisipdfesvds
tielisltwsgspsfliktespewgfllplealryvarwrtght*efvssndvnsniett
pllcslalitgpliesvvimrpfsfstlhndrvivpvrnfyfsfenffilrmf*nilkny
lkylgnsnk*mlfiiyiy---

---i*kkkkkkkkkkkkkkkkkkkkk

Frame B:
wngtllrrrylqyhlisndpss*qrgterywttaekp*rng*sei*t*qyqyltlrvliv
qls*yh*lgavhphs**rqshpngafffl*rl*gmlqggeqgileslyhltmlililkqh
hffvl*h**ldl*lsq****dlsvfrpytmiaslcrfeiftflskiflffecsrtf*kii
lniweiqinkcys*yiyi---

---FKKKKKKKKKKKKKKKKKKKKKK

Frame C:
gtery*eegiysii*fptthllnnvernvigqqqrshsgtgrvrfeldnint*l*ec**y
n*vniinlerftlilnkdrvtrmglsssfrgskvcckvanraylrvcii*rc*f*y*nnt
tslffsinnwtfn*vssnnetfqffdltq*srhcagskfllffrkffyssnvlehskkls
*ifgkfk*INVIHNIYIY---

---lkkkkkkkkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AE03 (FC-AE03Q) /CSM/FC/FC-AE/FC-AE03Q.Seq.d/                     1112   0.0
SLB473 (SLB473Q) /CSM/SL/SLB4-D/SLB473Q.Seq.d/                        573   e-162
SLI627 (SLI627Q) /CSM/SL/SLI6-B/SLI627Q.Seq.d/                        244   1e-63
SLF219 (SLF219Q) /CSM/SL/SLF2-A/SLF219Q.Seq.d/                        236   4e-61
SLC181 (SLC181Q) /CSM/SL/SLC1-D/SLC181Q.Seq.d/                        220   2e-56
AHO217 (AHO217Q) /CSM/AH/AHO2-A/AHO217Q.Seq.d/                        210   2e-53
SLD833 (SLD833Q) /CSM/SL/SLD8-B/SLD833Q.Seq.d/                        208   8e-53
SLE632 (SLE632Q) /CSM/SL/SLE6-B/SLE632Q.Seq.d/                        196   3e-49
SHH633 (SHH633Q) /CSM/SH/SHH6-B/SHH633Q.Seq.d/                         38   0.17
SHG643 (SHG643Q) /CSM/SH/SHG6-B/SHG643Q.Seq.d/                         38   0.17

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.   702  0.0  5
M11339|M11339.1 Slime mold (D.discoideum) transposon DIRS-1, complete, clone SB41.   394  0.0  7
M11340|M11340.1 Slime mold (D.discoideum) transposon DIRS-1, clone SB68.   410  0.0  3
K03066|K03066.1 Slime mold (D.discoideum) mRNA complementary to two noncontiguous regions of DIRS-1, clone pCCA5.   155  3e-62  2
K01221|K01221.1 Slime mold (D.discoideum) transposable element Tdd-1 left terminal repeat and flanks.   155  1e-61  2
K01222|K01222.1 Slime mold (D.discoideum) transposable element Tdd-1 right terminal repeat and flanks.   119  3e-59  3
K03071|K03071.1 Slime mold (D.discoideum) DIRS-1 left inverted terminal repeat, clone CP19-5.   155  8e-58  3
K03072|K03072.1 Slime mold (D.discoideum) DIRS-1 right inverted terminal repeat, clone SB63.   155  8e-58  3
K03067|K03067.1 Slime mold (D.discoideum) DIRS-1 left inverted terminal repeat, clone GM45.   155  3e-56  3
K03068|K03068.1 Slime mold (D.discoideum) DIRS-1 right inverted terminal repeat, clone GM45.   155  5e-56  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B24785(B24785)hypothetical protein 1028 - slime mold (Dictyostel...   238   9e-62
EF710659_7(EF710659|pid:none) Glyptapanteles indiensis clone BAC...    47   4e-04
CP000027_854(CP000027|pid:none) Dehalococcoides ethenogenes 195,...    42   0.021
CP000516_66(CP000516|pid:none) Marinobacter aquaeolei VT8 plasmi...    42   0.021
CP000820_4072(CP000820|pid:none) Frankia sp. EAN1pec, complete g...    40   0.046
AM502246_140(AM502246|pid:none) Leishmania infantum chromosome 28.     38   0.23
AF442732_2(AF442732|pid:none) Tetraodon nigroviridis TnDirs1 ret...    38   0.30
DQ092618_24(DQ092618|pid:none) Acyrthosiphon pisum bacteriophage...    37   0.39
AF157835_38(AF157835|pid:none) Acyrthosiphon pisum bacteriophage...    37   0.39
EU794063_1(EU794063|pid:none) Candidatus Hamiltonella defensa st...    37   0.39

 psg: 0.79  gvh: -0.24  alm: 0.71  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 2.01  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for FC-AE03 is nuc

>FC-AE03F.Seq
GTGGAACGGAACGTTATTAAGAAGAAGGTATCTACAGTATCATTTGATTTCCAACGACCC
ATCTTCTTAACAACGTGGAACGGAACGTTATTGGACAACAGCAGAGAAGCCATAGCGGAA
CGGGTAGAGTGAGATTTGAACTTGACAATATCAATACCTGACTTTGAGAGTGTTGATAGT
ACAATTGAGTTAATATCATTAACTTGGAGCGGTTCACCCTCATTCTTAATAAAGACAGAG
TCACCCGAATGGGGCTTTCTTCTTCCTTTAGAGGCTCTAAGGTATGTTGCAAGGTGGCGA
ACAGGGCATACTTGAGAGTTTGTATCATCTAACGATGTTAATTCTAATATTGAAACAACA
CCACTTCTTTGTTCTTTAGCATTAATAACTGGACCTTTAATTGAGTCAGTAGTAATAATG
AGACCTTTCAGTTTTTCGACCTTACACAATGATCGCGTCATTGTGCCGGTTCGAAATTTT
TACTTTTCTTTCGAAAATTTTTTTATTCTTCGAATGTTCTAGAACATTCTAAAAAATTAT
CTTAAATATTTGGGAAATTCAAATAAATAAATGTTATTCATAATATATATATATAT----
------