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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AD10
Library FC
(Link to library)
Clone ID FC-AD10
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16182-1
Original site URL
Representative seq. ID FC-AD10E
(Link to Original site)
Representative DNA sequence 
>FC-AD10 (FC-AD10Q) /CSM/FC/FC-AD/FC-AD10Q.Seq.d/
CATAAATGTCGATGGTAAAGATGAACTTTTATGGTGTAATGCTGGTATCCTTTGTACTGT
TCCATACATTAATGAAACTTATTGGGATAAAAACATCTATTCAACTGCTTCAAAAACTTA
TATGGGAACAATTAATGGTACTCAATTAAATCAATATATCGAATGGATGCAACAATATAA
TATTTCAAATCCAGTATACCAAACATGGGACGTCTGGAACAATTATGGTCAAGATTTGTT
TGTTCCATCAACAACATGTGATGATTTCACTCAACAATCAATCGAACATTTAGGTAGTAT
TGGTATTAATTATGATGGTTCAACAGTTTTCAAGAGAGATTACATTAATCTTTTCACTGA
AAAACCACAACCAATCGATTTCACAGAACATTATGATGATATCTTTAAATTCTATGAAGC
TGTATTAGAAATTAAAGAAGGCTCAATTGCACAAATCATTGAAAGAATTTTATCAATCAT
TGGTTTAAAGAAATATATTTACGTTCAAGGTGAATATTATTTATTAGAATTAAATTATCC
ATTTATGAATGCAAAATATGATTATATCACATTACCAGGTTGTCCAGCAAATGGTATCGA
TTATGAAAATGGCAATTTTATTCATCTCAATTAGATTATTTTAAAATTAGATTATTTTAA
ATTAAATTGGTTATAAATAAAAACTAAAAACAAAAATAATAAAAAAAAAATATCTTTTTT
TTTTTAATATTTTTCAAACTGTTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC
GATAGTTTCTTTTTTTATTTTCACTTTTTTTTTATTTTGTTTTGAGAAAAAAAAAAAAAA
AAAAAA
sequence update 1996.10.26
Translated Amino Acid sequence 
INVDGKDELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGTINGTQLNQYIEWMQQYN
ISNPVYQTWDVWNNYGQDLFVPSTTCDDFTQQSIEHLGSIGINYDGSTVFKRDYINLFTE
KPQPIDFTEHYDDIFKFYEAVLEIKEGSIAQIIERILSIIGLKKYIYVQGEYYLLELNYP
FMNAKYDYITLPGCPANGIDYENGNFIHLN*iilkldyfklnwl*iktknknnkkkisff
f*yfsncf*kkkkkkkkkktivsffiftfflfcfekkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hkcrw*r*tfmv*cwyplycsih**nllg*khlfncfknlygnn*wysiksiyrmdati*
yfkssipnmgrleqlwsrfvcsinnm**fhstinrtfr*ywy*l*wfnsfqerlh*sfh*
ktttnrfhrtl**yl*il*scirn*rrlnctnh*knfinhwfkeiylrsr*ilfirikls
iyecki*lyhitrlsskwyrl*kwqfyssqldyfkirlf*iklvinkn*kqk**kkniff
fliffklflkkkkkkkkkkndsfffyfhfffilf*ekkkkkk


Frame B:
INVDGKDELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGTINGTQLNQYIEWMQQYN
ISNPVYQTWDVWNNYGQDLFVPSTTCDDFTQQSIEHLGSIGINYDGSTVFKRDYINLFTE
KPQPIDFTEHYDDIFKFYEAVLEIKEGSIAQIIERILSIIGLKKYIYVQGEYYLLELNYP
FMNAKYDYITLPGCPANGIDYENGNFIHLN*iilkldyfklnwl*iktknknnkkkisff
f*yfsncf*kkkkkkkkkktivsffiftfflfcfekkkkkk


Frame C:
*msmvkmnfygvmlvsfvlfhtlmkligiktsiqllqkliweqlmvln*inisngcnnii
fqiqytkhgtsgtimvkiclfhqqhvmislnnqsni*vvlvlimmvqqfsreitlifslk
nhnqsisqnimmislnsmkly*klkkaqlhkslkefyqslv*rniftfkvniiy*n*iih
l*mqnmiishyqvvqqmvsimkmailfisirlf*n*iiln*igyk*klktkiikkkylff
fnifqtvsekkkkkkkkkkr*flflfslffyfvlrkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AD10 (FC-AD10Q) /CSM/FC/FC-AD/FC-AD10Q.Seq.d/                     1211   0.0
FC-080 (FC-080Q) /CSM/CG/CG-FC/FC-080Q.Seq.d/                        1211   0.0
SSK458 (SSK458Q) /CSM/SS/SSK4-C/SSK458Q.Seq.d/                       1154   0.0
VFG895 (VFG895Q) /CSM/VF/VFG8-D/VFG895Q.Seq.d/                        936   0.0
SLE504 (SLE504Q) /CSM/SL/SLE5-A/SLE504Q.Seq.d/                        916   0.0
FC-AG17 (FC-AG17Q) /CSM/FC/FC-AG/FC-AG17Q.Seq.d/                      910   0.0
VHL857 (VHL857Q) /CSM/VH/VHL8-C/VHL857Q.Seq.d/                        890   0.0
VFC480 (VFC480Q) /CSM/VF/VFC4-D/VFC480Q.Seq.d/                        890   0.0
SSC271 (SSC271Q) /CSM/SS/SSC2-C/SSC271Q.Seq.d/                        872   0.0
SFJ661 (SFJ661Q) /CSM/SF/SFJ6-C/SFJ661Q.Seq.d/                        864   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   561   0.0    12
AE014844|AE014844.1 Plasmodium falciparum 3D7 chromosome 12 section 1 of 9 of the complete sequence.    42   5e-07  12
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    34   3e-05  15
AC006278|AC006278.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42   5e-05  8
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           42   1e-04  14
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    36   1e-04  14
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   4e-04  12
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    34   6e-04  12
AF396436|AF396436.1 Tetrahymena thermophila strain SB210 mitochondrion, complete genome.    38   7e-04  10
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    40   9e-04  11
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q553W9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5 ...   443   e-123
AC116305_28(AC116305|pid:none) Dictyostelium discoideum chromoso...   142   1e-32
(Q86JG6) RecName: Full=Cln5-like protein 1; Flags: Precursor;  &...    76   2e-12
(Q54WC3) RecName: Full=Cln5-like protein 2; Flags: Precursor;          70   9e-11
(Q1ZYR0) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    69   2e-10
AF068227_1(AF068227|pid:none) Homo sapiens putative transmembran...    67   6e-10
AK075109_1(AK075109|pid:none) Homo sapiens cDNA FLJ90628 fis, cl...    67   6e-10
AY885123_1(AY885123|pid:none) Canis familiaris CLN5 (CLN5) gene,...    66   2e-09
(Q5JZQ9) Ceroid-lipofuscinosis neuronal protein 5 precursor (Pro...    66   2e-09
CR761663_1(CR761663|pid:none) Xenopus tropicalis finished cDNA, ...    64   6e-09
protein update 2009. 7. 2
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for FC-AD10 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AD10E
Full length Seq. 
>FC-AD10E.Seq
CATAAATGTCGATGGTAAAGATGAACTTTTATGGTGTAATGCTGGTATCCTTTGTACTGT
TCCATACATTAATGAAACTTATTGGGATAAAAACATCTATTCAACTGCTTCAAAAACTTA
TATGGGAACAATTAATGGTACTCAATTAAATCAATATATCGAATGGATGCAACAATATAA
TATTTCAAATCCAGTATACCAAACATGGGACGTCTGGAACAATTATGGTCAAGATTTGTT
TGTTCCATCAACAACATGTGATGATTTCACTCAACAATCAATCGAACATTTAGGTAGTAT
TGGTATTAATTATGATGGTTCAACAGTTTTCAAGAGAGATTACATTAATCTTTTCACTGA
AAAACCACAACCAATCGATTTCACAGAACATTATGATGATATCTTTAAATTCTATGAAGC
TGTATTAGAAATTAAAGAAGGCTCAATTGCACAAATCATTGAAAGAATTTTATCAATCAT
TGGTTTAAAGAAATATATTTACGTTCAAGGTGAATATTATTTATTAGAATTAAATTATCC
ATTTATGAATGCAAAATATGATTATATCACATTACCAGGTTGTCCAGCAAATGGTATCGA
TTATGAAAATGGCAATTTTATTCATCTCAATTAGATTATTTTAAAATTAGATTATTTTAA
ATTAAATTGGTTATAAATAAAAACTAAAAACAAAAATAATAAAAAAAAAATATCTTTTTT
TTTTTAATATTTTTCAAACTGTTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC
GATAGTTTCTTTTTTTATTTTCACTTTTTTTTTATTTTGTTTTGAGAAAAAAAAAAAAAA
AAAAAA
Length of full length seq. 846