FC-AD05
Library FC
(Link to library)
Clone ID FC-AD05
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15950-1
Original site URL
Representative seq. ID FC-AD05P
(Link to Original site)
Representative DNA sequence
>FC-AD05 (FC-AD05Q) /CSM/FC/FC-AD/FC-AD05Q.Seq.d/
AAAACATTTATTTGGTCATTTATTTATTATCATTTCACTGGTATGGGTATTACAGCAGGT
TATCATAGACTTTGGGCTCATAAGGCTTATAGTGCAGTTTTACCAGTTCGTATTATCTTG
TTGCTATTTGGTGCAGGTGCTGTCGAAGGTTCATGTCGTTGGTGGTCAAGAGATCATCGT
GCTCATCATCGTTATCTCGATACTGATAAAGATCCATATTCAGCTTCATTGGGTTTCTGG
CATTCCCATTTCATTTGGTTAATGTTCAAACAAGATCCAAAGAAAATCGGTAGAGCAAAC
ATTGACGACCTTAACGCCGATCCATGGGTTATGTGGCAACATAAACATTACATTAAAATC
GCCACTTTTATGGGTCTCGTTTTCCCAACATTGGTAGCTGGTTTAGGTTGGGGTGATTGG
GCTGGTGGTTATTTCTACTCTGGTGTACTTCGTCTCGTTACAGTTCAACATTCCACATTC
TTGGTCAATTCATTGGCTCATTATTTAGGTGACTCTCCATACGATGATGAACATACTCCA
AAGGTATTCAGTTGTGACTGCTAXXXXXXXXXXCAAAACAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAACTGTTTTTCTTTTTTTTTTTTTTTAAAACCAATATTTTATAAAATTCCT
CATCCCATCAATATCATAATGTAAACATATAATAAAGTAATAATAAAAAAAAAAAAAAAA
CATTGATTTTAAAAATCTTGTTTTAATTATTAGAAAATTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 3.31
Translated Amino Acid sequence
KTFIWSFIYYHFTGMGITAGYHRLWAHKAYSAVLPVRIILLLFGAGAVEGSCRWWSRDHR
AHHRYLDTDKDPYSASLGFWHSHFIWLMFKQDPKKIGRANIDDLNADPWVMWQHKHYIKI
ATFMGLVFPTLVAGLGWGDWAGGYFYSGVLRLVTVQHSTFLVNSLAHYLGDSPYDDEHTP
KVFSCDC---

---QNKKKKKKKKKKNCFSFFFFLKPIFYKIPHPINIIM*tynkviikkkkkh*f*kscf
ny*kiqkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
KTFIWSFIYYHFTGMGITAGYHRLWAHKAYSAVLPVRIILLLFGAGAVEGSCRWWSRDHR
AHHRYLDTDKDPYSASLGFWHSHFIWLMFKQDPKKIGRANIDDLNADPWVMWQHKHYIKI
ATFMGLVFPTLVAGLGWGDWAGGYFYSGVLRLVTVQHSTFLVNSLAHYLGDSPYDDEHTP
KVFSCDC---

---QNKKKKKKKKKKNCFSFFFFLKPIFYKIPHPINIIM*tynkviikkkkkh*f*kscf
ny*kiqkkkkkkkkkkkkk

Frame B:
khlfghlfiiislvwvlqqviidfglirlivqfyqfvlsccylvqvlskvhvvggqeiiv
liivisilikihiqlhwvsgipisfg*csnkiqrksveqtlttltpihglcgninitlks
pllwvsfsqhw*lv*vgviglvvistlvyfvslqfniphswsihwlii*vtlhtmmnilq
rysvvta---

---ktkkkkkkkkkktvflffff*nqyfikflipsis*ckhiik***kkkknidfknlvl
iirkfkkkkkkkkkkkkkk

Frame C:
niylviyllsfhwygyysrls*tlgs*gl*csftssyylvaiwcrccrrfmslvvkrssc
ssslsry**rsifsfigflafpfhlvnvqtrskenr*skh*rp*rrsmgyvat*tlh*nr
hfygsrfpnigswfrlg*lgwwlfllwctssrysstfhilgqfigslfr*lsir**tysk
giql*ll---

---kqkkkkkkkkkklfffffffktnil*nssshqyhnvni**snnkkkkktlilkilf*
llenskkkkkkkkkkkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AD05 (FC-AD05Q) /CSM/FC/FC-AD/FC-AD05Q.Seq.d/ 1116 0.0
VHK887 (VHK887Q) /CSM/VH/VHK8-D/VHK887Q.Seq.d/ 1068 0.0
VHP282 (VHP282Q) /CSM/VH/VHP2-D/VHP282Q.Seq.d/ 1065 0.0
VHF376 (VHF376Q) /CSM/VH/VHF3-D/VHF376Q.Seq.d/ 977 0.0
VHP359 (VHP359Q) /CSM/VH/VHP3-C/VHP359Q.Seq.d/ 936 0.0
VHI633 (VHI633Q) /CSM/VH/VHI6-B/VHI633Q.Seq.d/ 924 0.0
VFA222 (VFA222Q) /CSM/VF/VFA2-A/VFA222Q.Seq.d/ 914 0.0
VFM428 (VFM428Q) /CSM/VF/VFM4-B/VFM428Q.Seq.d/ 878 0.0
VHE611 (VHE611Q) /CSM/VH/VHE6-A/VHE611Q.Seq.d/ 862 0.0
VHL555 (VHL555Q) /CSM/VH/VHL5-C/VHL555Q.Seq.d/ 841 0.0

own update 2003.10.31
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 1078 0.0 4
AL115898|AL115898.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 44 4e-08 3
AL116230|AL116230.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 44 6e-07 3
AL114909|AL114909.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 44 2e-06 3
AF026401|AF026401.1 Mucor rouxii stearoyl-CoA desaturase (Ole1) gene, complete cds. 42 0.002 4
AL113251|AL113251.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 38 0.057 2
BE581351|BE581351.1 kq49f06.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F10D2.9 CE09320 STEAROYL-COA DESATURASE ;, mRNA sequence. 40 0.60 2
AC063928|AC063928.18 Homo sapiens chromosome 3 clone RP11-21B16, WORKING DRAFT SEQUENCE, 48 unordered pieces. 46 0.65 1
AC026715|AC026715.3 Homo sapiens chromosome 5 clone CTD-2135A10, WORKING DRAFT SEQUENCE, 39 unordered pieces. 42 2.4 3
AC105640|AC105640.3 Rattus norvegicus clone CH230-148A10, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 44 2.6 1
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos... 399 e-110
AM920435_140(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 272 8e-72
EU857727_1(EU857727|pid:none) Hortaea werneckii delta-9 desatura... 271 2e-71
AY576801_1(AY576801|pid:none) Hortaea werneckii putative delta-9... 271 2e-71
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear... 270 3e-71
S52746(S52746;S52745) stearoyl-CoA 9-desaturase (EC 1.14.19.1) [... 270 5e-71
(Q12618) RecName: Full=Acyl-CoA desaturase; EC=1.14.19.... 267 2e-70
DQ901954_1(DQ901954|pid:none) Aureobasidium pullulans putative d... 267 3e-70
AP007151_392(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 265 1e-69
AF510861_1(AF510861|pid:none) Emericella nidulans stearic acid d... 265 2e-69
protein update 2009. 4.13
PSORT

psg: 0.93 gvh: 0.74 alm: 0.32 top: 0.57 tms: 0.07 mit: 0.34 mip: 0.07
nuc: 0.28 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: plasma membrane
32.0 %: extracellular, including cell wall
20.0 %: endoplasmic reticulum
12.0 %: Golgi

>> prediction for FC-AD05 is pla

5' end seq. ID FC-AD05F
5' end seq.
>FC-AD05F.Seq
AAAACATTTATTTGGTCATTTATTTATTATCATTTCACTGGTATGGGTATTACAGCAGGT
TATCATAGACTTTGGGCTCATAAGGCTTATAGTGCAGTTTTACCAGTTCGTATTATCTTG
TTGCTATTTGGTGCAGGTGCTGTCGAAGGTTCATGTCGTTGGTGGTCAAGAGATCATCGT
GCTCATCATCGTTATCTCGATACTGATAAAGATCCATATTCAGCTTCATTGGGTTTCTGG
CATTCCCATTTCATTTGGTTAATGTTCAAACAAGATCCAAAGAAAATCGGTAGAGCAAAC
ATTGACGACCTTAACGCCGATCCATGGGTTATGTGGCAACATAAACATTACATTAAAATC
GCCACTTTTATGGGTCTCGTTTTCCCAACATTGGTAGCTGGTTTAGGTTGGGGTGATTGG
GCTGGTGGTTATTTCTACTCTGGTGTACTTCGTCTCGTTACAGTTCAACATTCCACATTC
TTGGTCAATTCATTGGCTCATTATTTAGGTGACTCTCCATACGATGATGAACATACTCCA
AAGGTATTCAGTTGTGACTGCTA----------
Length of 5' end seq. 563
3' end seq. ID FC-AD05Z
3' end seq.
>FC-AD05Z.Seq
----------CAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGTTTTTCTTT
TTTTTTTTTTTTAAAACCAATATTTTATAAAATTCCTCATCCCATCAATATCATAATGTA
AACATATAATAAAGTAATAATAAAAAAAAAAAAAAAACATTGATTTTAAAAATCTTGTTT
TAATTATTAGAAAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 230
Connected seq. ID FC-AD05P
Connected seq.
>FC-AD05P.Seq
AAAACATTTATTTGGTCATTTATTTATTATCATTTCACTGGTATGGGTATTACAGCAGGT
TATCATAGACTTTGGGCTCATAAGGCTTATAGTGCAGTTTTACCAGTTCGTATTATCTTG
TTGCTATTTGGTGCAGGTGCTGTCGAAGGTTCATGTCGTTGGTGGTCAAGAGATCATCGT
GCTCATCATCGTTATCTCGATACTGATAAAGATCCATATTCAGCTTCATTGGGTTTCTGG
CATTCCCATTTCATTTGGTTAATGTTCAAACAAGATCCAAAGAAAATCGGTAGAGCAAAC
ATTGACGACCTTAACGCCGATCCATGGGTTATGTGGCAACATAAACATTACATTAAAATC
GCCACTTTTATGGGTCTCGTTTTCCCAACATTGGTAGCTGGTTTAGGTTGGGGTGATTGG
GCTGGTGGTTATTTCTACTCTGGTGTACTTCGTCTCGTTACAGTTCAACATTCCACATTC
TTGGTCAATTCATTGGCTCATTATTTAGGTGACTCTCCATACGATGATGAACATACTCCA
AAGGTATTCAGTTGTGACTGCTA----------CAAAACAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAACTGTTTTTCTTTTTTTTTTTTTTTAAAACCAATATTTTATAAAATTCCT
CATCCCATCAATATCATAATGTAAACATATAATAAAGTAATAATAAAAAAAAAAAAAAAA
CATTGATTTTAAAAATCTTGTTTTAATTATTAGAAAATTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 793
Full length Seq ID -
Full length Seq. -
Length of full length seq. -