>FC-AC10 (FC-AC10Q) /CSM/FC/FC-AC/FC-AC10Q.Seq.d/
CAGAAATTCTTAGATATTGTCAAGGTATCATGCAACGTGGTATCAAAGAATCTATTAAAA
CATTATATTACACAGGTGAACTCAAATTTGGTACATTAGTTGGTGTTGATAAAGTTGGTA
ATAGATATTATGAAAATAGACAAGAAATCTATGGAAGACATAGATGGGTAGAATATGGAG
ATTACAAATCAAATGATCCAACCACCATCCCACCAGAATATCACAGTTGGATTCACCACG
TTTCTGATAAACTCCCAAGTGAAATGCTTCCATTTTCACCAACATACAAAAGACCACATA
TTGCCAATCCAACTGGTACTGATGGTGCCTATACACCACCAAATTTCTTATTCAATATTG
AAAAATCAAAAGAAGAACTTCAAAAAGAAGAAAAGAATGATAACAAACAATAATTTAGTA
TGAATAATAATAATAAAATAATAATAAATAATATAATATATAAAAAAAAAAAAAAAAAAA
TAGTGATAATAAAAAAAAAAAAAAAAAAAAATAAAA

EILRYCQGIMQRGIKESIKTLYYTGELKFGTLVGVDKVGNRYYENRQEIYGRHRWVEYGD
YKSNDPTTIPPEYHSWIHHVSDKLPSEMLPFSPTYKRPHIANPTGTDGAYTPPNFLFNIE
KSKEELQKEEKNDNKQ*fsmnnnnkiiinniiykkkkkkiviikkkkkknk

Frame A:
qkfldivkvscnvvsknllkhyitqvnsnlvh*lvliklvidimkidkksmedidg*nme
itnqmiqppshqnitvgfttflinsqvkcfhfhqhtkdhilpiqlvlmvpihhqisysil
knqkknfkkkkrmitnnnlv*iiiik***ii*yikkkkkk****kkkkkkik


Frame B:
rns*ilsryhatwyqriy*niilhr*tqiwyiswc**sw**il*k*trnlwkt*mgriwr
lqik*snhhptrisqldsprf**tpk*nasiftniqkttycqsnwy*wclyttkfliqy*
kikrrtskrrke**qtii*ye****nnnk*yni*kkkkknsdnkkkkkkk*


Frame C:
EILRYCQGIMQRGIKESIKTLYYTGELKFGTLVGVDKVGNRYYENRQEIYGRHRWVEYGD
YKSNDPTTIPPEYHSWIHHVSDKLPSEMLPFSPTYKRPHIANPTGTDGAYTPPNFLFNIE
KSKEELQKEEKNDNKQ*fsmnnnnkiiinniiykkkkkkiviikkkkkknk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AC10 (FC-AC10Q) /CSM/FC/FC-AC/FC-AC10Q.Seq.d/                      712   0.0
SSK426 (SSK426Q) /CSM/SS/SSK4-B/SSK426Q.Seq.d/                        706   0.0
VFJ869 (VFJ869Q) /CSM/VF/VFJ8-C/VFJ869Q.Seq.d/                        694   0.0
SLH634 (SLH634Q) /CSM/SL/SLH6-B/SLH634Q.Seq.d/                         36   0.51
AHE518 (AHE518Q) /CSM/AH/AHE5-A/AHE518Q.Seq.d/                         36   0.51
AHB236 (AHB236Q) /CSM/AH/AHB2-B/AHB236Q.Seq.d/                         36   0.51
AHA686 (AHA686Q) /CSM/AH/AHA6-D/AHA686Q.Seq.d/                         36   0.51
AFC170 (AFC170Q) /CSM/AF/AFC1-C/AFC170Q.Seq.d/                         36   0.51
SSL536 (SSL536Q) /CSM/SS/SSL5-B/SSL536Q.Seq.d/                         34   2.0
SSD274 (SSD274Q) /CSM/SS/SSD2-D/SSD274Q.Seq.d/                         34   2.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC036132|AC036132.1 Homo sapiens chromosome 1 clone RP11-178D7 map 1, LOW-PASS SEQUENCE SAMPLING.    42   3e-05  3
BQ104476|BQ104476.1 fc0497.e Rose Petals (Fragrant Cloud) Lambda Zap Express Library Rosa hybrid cultivar cDNA clone fc0497.e 5', mRNA sequence.    46   3e-05  2
CF349401|CF349401.1 fc3079.e Rose Petals (Fragrant Cloud) Lambda Zap Express Library Rosa hybrid cultivar cDNA clone fc3079.e 5', mRNA sequence.    46   3e-05  2
BG269745|BG269745.1 L48-3842T3 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L48-3842 5', mRNA sequence.    40   0.002  2
AC011258|AC011258.1 Homo sapiens chromosome 18 clone 343_A_21 map 18, LOW-PASS SEQUENCE SAMPLING.    38   0.23   2
CB822108|CB822108.1 EST 2959 Half-Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone be005d08 3', mRNA sequence.    32   0.33   2
AC104082|AC104082.3 Homo sapiens BAC clone RP11-570L13 from 4, complete sequence.    38   0.56   2
AC083883|AC083883.6 Homo sapiens BAC clone RP11-792N18 from 7, complete sequence.    34   0.70   3
AL359553|AL359553.14 Human DNA sequence from clone RP5-871G17 on chromosome 1.    42   1.2    2
CA922460|CA922460.1 EST640178 MTUS Medicago truncatula cDNA clone MTUS-54A1, mRNA sequence.    32   1.2    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017345_399(AE017345|pid:none) Cryptococcus neoformans var. neo...    92   1e-17
AK340695_1(AK340695|pid:none) Acyrthosiphon pisum ACYPI007810 mR...    91   1e-17
BT075977_1(BT075977|pid:none) Caligus rogercresseyi clone crog-e...    88   1e-16
AY814630_1(AY814630|pid:none) Schistosoma japonicum SJCHGC08585 ...    86   5e-16
BT077831_1(BT077831|pid:none) Lepeophtheirus salmonis Pacific fo...    84   3e-15
AY118779_1(AY118779|pid:none) Drosophila melanogaster GH12382 fu...    82   8e-15
AE014134_446(AE014134|pid:none) Drosophila melanogaster chromoso...    82   8e-15
BC084520_1(BC084520|pid:none) Xenopus tropicalis hypothetical LO...    81   2e-14
EF084009_1(EF084009|pid:none) Picea sitchensis clone WS0274_K03 ...    81   2e-14
DQ215400_1(DQ215400|pid:none) Taeniopygia guttata clone 0061P000...    80   2e-14

 psg: 0.63  gvh: 0.16  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for FC-AC10 is nuc

>FC-AC10E.Seq
CAGAAATTCTTAGATATTGTCAAGGTATCATGCAACGTGGTATCAAAGAATCTATTAAAA
CATTATATTACACAGGTGAACTCAAATTTGGTACATTAGTTGGTGTTGATAAAGTTGGTA
ATAGATATTATGAAAATAGACAAGAAATCTATGGAAGACATAGATGGGTAGAATATGGAG
ATTACAAATCAAATGATCCAACCACCATCCCACCAGAATATCACAGTTGGATTCACCACG
TTTCTGATAAACTCCCAAGTGAAATGCTTCCATTTTCACCAACATACAAAAGACCACATA
TTGCCAATCCAACTGGTACTGATGGTGCCTATACACCACCAAATTTCTTATTCAATATTG
AAAAATCAAAAGAAGAACTTCAAAAAGAAGAAAAGAATGATAACAAACAATAATTTAGTA
TGAATAATAATAATAAAATAATAATAAATAATATAATATATAAAAAAAAAAAAAAAAAAA
TAGTGATAATAAAAAAAAAAAAAAAAAAAAATAAAA